RNA–Protein interactions for RNA: ENST00000497580.5

GAPVD1-220, Transcript of GTPase activating protein and VPS9 domains 1, humanhuman

TSL 2

Gene GAPVD1, Length 3,720 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GAPVD1-220ENST00000497580 LMOD3Q0VAK6 560 aa15.41■□□□□ 0.06
GAPVD1-220ENST00000497580 SNW1Q13573 536 aaKnown RBP15.41■□□□□ 0.06
GAPVD1-220ENST00000497580 GNL2Q13823 731 aaKnown RBP15.41■□□□□ 0.06
GAPVD1-220ENST00000497580 PRPF40BQ6NWY9 871 aaKnown RBP15.41■□□□□ 0.06
GAPVD1-220ENST00000497580 ERCC4Q92889 916 aaPredicted RBP15.41■□□□□ 0.06
GAPVD1-220ENST00000497580 PNMA6AP0CW24 399 aaPredicted RBP15.41■□□□□ 0.06
GAPVD1-220ENST00000497580 FAM177A1Q8N128 213 aaPredicted RBP15.41■□□□□ 0.06
GAPVD1-220ENST00000497580 REREQ9P2R6 1566 aa15.4■□□□□ 0.06
GAPVD1-220ENST00000497580 NME9Q86XW9 330 aa15.4■□□□□ 0.06
GAPVD1-220ENST00000497580 OSBPL3Q9H4L5 887 aa15.4■□□□□ 0.06
GAPVD1-220ENST00000497580 ZKSCAN7Q9P0L1 754 aaPredicted RBP15.4■□□□□ 0.06
GAPVD1-220ENST00000497580 MAP3K4Q9Y6R4 1608 aa15.4■□□□□ 0.06
GAPVD1-220ENST00000497580 ARHGEF40Q8TER5 1519 aa15.4■□□□□ 0.06
GAPVD1-220ENST00000497580 ZNF853P0CG23 659 aa15.4■□□□□ 0.06
GAPVD1-220ENST00000497580 SLC20A2Q08357 652 aa15.4■□□□□ 0.06
GAPVD1-220ENST00000497580 MNS1Q8NEH6 495 aa15.4■□□□□ 0.06
GAPVD1-220ENST00000497580 FBXO31Q5XUX0 539 aaPredicted RBP15.39■□□□□ 0.05
GAPVD1-220ENST00000497580 UBXN4Q92575 508 aa15.39■□□□□ 0.05
GAPVD1-220ENST00000497580 EPC1Q9H2F5 836 aa15.39■□□□□ 0.05
GAPVD1-220ENST00000497580 KIF1BPQ96EK5 621 aa15.39■□□□□ 0.05
GAPVD1-220ENST00000497580 KNDC1Q76NI1 1749 aa15.39■□□□□ 0.05
GAPVD1-220ENST00000497580 SMARCE1Q969G3 411 aa15.39■□□□□ 0.05
GAPVD1-220ENST00000497580 FMNL2Q96PY5 1086 aa15.39■□□□□ 0.05
GAPVD1-220ENST00000497580 FHOD1Q9Y613 1164 aa15.39■□□□□ 0.05
GAPVD1-220ENST00000497580 PPRC1Q5VV67 1664 aaKnown RBP15.39■□□□□ 0.05
GAPVD1-220ENST00000497580 LRRC7Q96NW7 1537 aa15.38■□□□□ 0.05
GAPVD1-220ENST00000497580 FANCAO15360 1455 aa15.38■□□□□ 0.05
GAPVD1-220ENST00000497580 PLA2G4AP47712 749 aa15.38■□□□□ 0.05
GAPVD1-220ENST00000497580 TPM4P67936 248 aa15.38■□□□□ 0.05
GAPVD1-220ENST00000497580 ADCK5Q3MIX3 580 aa15.38■□□□□ 0.05
GAPVD1-220ENST00000497580 CCAR2Q8N163 923 aaKnown RBP15.38■□□□□ 0.05
GAPVD1-220ENST00000497580 ARGLU1Q9NWB6 273 aaPredicted RBP15.38■□□□□ 0.05
GAPVD1-220ENST00000497580 LMAN1P49257 510 aa15.38■□□□□ 0.05
GAPVD1-220ENST00000497580 C11orf57Q6ZUT1 292 aaPredicted RBP15.38■□□□□ 0.05
GAPVD1-220ENST00000497580 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.38■□□□□ 0.05
GAPVD1-220ENST00000497580 TDRD7Q8NHU6 1098 aaKnown RBP15.38■□□□□ 0.05
GAPVD1-220ENST00000497580 LCMT1Q9UIC8 334 aa15.38■□□□□ 0.05
GAPVD1-220ENST00000497580 GTF2A1P52655 376 aaPredicted RBP15.38■□□□□ 0.05
GAPVD1-220ENST00000497580 DDX11Q96FC9 970 aa15.37■□□□□ 0.05
GAPVD1-220ENST00000497580 SURF6O75683 361 aaKnown RBP15.37■□□□□ 0.05
GAPVD1-220ENST00000497580 GPS2Q13227 327 aa15.37■□□□□ 0.05
GAPVD1-220ENST00000497580 SMC2O95347 1197 aa15.37■□□□□ 0.05
GAPVD1-220ENST00000497580 ZSCAN26Q16670 478 aa15.37■□□□□ 0.05
GAPVD1-220ENST00000497580 ME3Q16798 604 aa15.37■□□□□ 0.05
GAPVD1-220ENST00000497580 TTC14Q96N46 770 aa15.37■□□□□ 0.05
GAPVD1-220ENST00000497580 DDX19AQ9NUU7 478 aaKnown RBP15.37■□□□□ 0.05
GAPVD1-220ENST00000497580 COL3A1P02461 1466 aaPredicted RBP15.36■□□□□ 0.05
GAPVD1-220ENST00000497580 NYAP1Q6ZVC0 841 aa15.36■□□□□ 0.05
GAPVD1-220ENST00000497580 DNAI1Q9UI46 699 aa15.36■□□□□ 0.05
GAPVD1-220ENST00000497580 CYP46A1Q9Y6A2 500 aa15.36■□□□□ 0.05
GAPVD1-220ENST00000497580 FAM135BQ49AJ0 1406 aa15.36■□□□□ 0.05
GAPVD1-220ENST00000497580 ERBB3P21860 1342 aa15.36■□□□□ 0.05
GAPVD1-220ENST00000497580 URI1O94763 535 aaPredicted RBP15.36■□□□□ 0.05
GAPVD1-220ENST00000497580 OAS2P29728 719 aaKnown RBP15.36■□□□□ 0.05
GAPVD1-220ENST00000497580 TXLNBQ8N3L3 684 aa15.36■□□□□ 0.05
GAPVD1-220ENST00000497580 CLSTN2Q9H4D0 955 aa15.36■□□□□ 0.05
GAPVD1-220ENST00000497580 MYO1CO00159 1063 aa15.35■□□□□ 0.05
GAPVD1-220ENST00000497580 OS9Q13438 667 aaPredicted RBP15.35■□□□□ 0.05
GAPVD1-220ENST00000497580 HYPKQ9NX55 129 aa15.35■□□□□ 0.05
GAPVD1-220ENST00000497580 SKIDA1Q1XH10 827 aa15.35■□□□□ 0.05
GAPVD1-220ENST00000497580 RIMS2Q9UQ26 1411 aa15.35■□□□□ 0.05
GAPVD1-220ENST00000497580 PPFIA3O75145 1194 aa15.35■□□□□ 0.05
GAPVD1-220ENST00000497580 MYOM2P54296 1465 aa15.35■□□□□ 0.05
GAPVD1-220ENST00000497580 SGSM2O43147 1006 aa15.34■□□□□ 0.05
GAPVD1-220ENST00000497580 RNF20Q5VTR2 975 aa15.34■□□□□ 0.05
GAPVD1-220ENST00000497580 SULT6B1Q6IMI4 303 aa15.34■□□□□ 0.05
GAPVD1-220ENST00000497580 GPATCH11Q8N954 259 aa15.34■□□□□ 0.05
GAPVD1-220ENST00000497580 LEO1Q8WVC0 666 aaPredicted RBP15.34■□□□□ 0.05
GAPVD1-220ENST00000497580 RGS22Q8NE09 1264 aa15.34■□□□□ 0.05
GAPVD1-220ENST00000497580 QRICH2Q9H0J4 1663 aa15.34■□□□□ 0.05
GAPVD1-220ENST00000497580 RAB11FIP3O75154 756 aa15.33■□□□□ 0.05
GAPVD1-220ENST00000497580 CCZ1BP86790 482 aa15.33■□□□□ 0.05
GAPVD1-220ENST00000497580 CCZ1P86791 482 aaPredicted RBP15.33■□□□□ 0.05
GAPVD1-220ENST00000497580 LARP1Q6PKG0 1096 aaKnown RBP15.33■□□□□ 0.05
GAPVD1-220ENST00000497580 TMC6Q7Z403 805 aa15.33■□□□□ 0.05
GAPVD1-220ENST00000497580 AOPEPQ8N6M6 819 aa15.33■□□□□ 0.05
GAPVD1-220ENST00000497580 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.33■□□□□ 0.054e-14■□□□□ 10.3
GAPVD1-220ENST00000497580 H2AFXP16104 143 aaPredicted RBP15.33■□□□□ 0.04
GAPVD1-220ENST00000497580 HAP1P54257 671 aaPredicted RBP15.33■□□□□ 0.04
GAPVD1-220ENST00000497580 SLFNL1Q499Z3 407 aa15.33■□□□□ 0.04
GAPVD1-220ENST00000497580 TXNDC2Q86VQ3 553 aa15.33■□□□□ 0.04
GAPVD1-220ENST00000497580 SCAND2PQ9GZW5 306 aaPredicted RBP15.33■□□□□ 0.04
GAPVD1-220ENST00000497580 TAOK2Q9UL54 1235 aa15.33■□□□□ 0.04
GAPVD1-220ENST00000497580 PTPRCP08575 1304 aa15.33■□□□□ 0.04
GAPVD1-220ENST00000497580 ANKRD65E5RJM6 399 aa15.33■□□□□ 0.04
GAPVD1-220ENST00000497580 PTH1RQ03431 593 aa15.33■□□□□ 0.04
GAPVD1-220ENST00000497580 NPHP3Q7Z494 1330 aa15.33■□□□□ 0.04
GAPVD1-220ENST00000497580 NEMFO60524 1076 aa15.32■□□□□ 0.04
GAPVD1-220ENST00000497580 CNTROBQ8N137 903 aa15.32■□□□□ 0.04
GAPVD1-220ENST00000497580 LSG1Q9H089 658 aaKnown RBP15.32■□□□□ 0.04
GAPVD1-220ENST00000497580 LOC102724159A0A0B4J2E5 919 aa15.32■□□□□ 0.04
GAPVD1-220ENST00000497580 CCT4P50991 539 aaKnown RBP15.32■□□□□ 0.04
GAPVD1-220ENST00000497580 PWP2Q15269 919 aaKnown RBP15.32■□□□□ 0.04
GAPVD1-220ENST00000497580 CARD6Q9BX69 1037 aa15.32■□□□□ 0.04
GAPVD1-220ENST00000497580 STK31Q9BXU1 1019 aa15.32■□□□□ 0.04
GAPVD1-220ENST00000497580 FAM53CQ9NYF3 392 aa15.32■□□□□ 0.04
GAPVD1-220ENST00000497580 TPCN1Q9ULQ1 816 aa15.32■□□□□ 0.04
GAPVD1-220ENST00000497580 KIF24Q5T7B8 1368 aa15.32■□□□□ 0.04
GAPVD1-220ENST00000497580 H3BQV1 296 aa15.32■□□□□ 0.04
GAPVD1-220ENST00000497580 DHX16O60231 1041 aaKnown RBP15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms