RNA–Protein interactions for RNA: ENST00000393454.6

TDP1-203, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TDP1, Length 2,068 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-203ENST00000393454 HDAC5Q9UQL6 1122 aa10.75□□□□□ -0.69
TDP1-203ENST00000393454 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.75□□□□□ -0.69
TDP1-203ENST00000393454 NEURL1BA8MQ27 555 aa10.75□□□□□ -0.69
TDP1-203ENST00000393454 GRM8O00222 908 aa10.75□□□□□ -0.69
TDP1-203ENST00000393454 GJD4Q96KN9 370 aaPredicted RBP10.75□□□□□ -0.69
TDP1-203ENST00000393454 ATP5J2-PTCD1G3V325 749 aa10.74□□□□□ -0.69
TDP1-203ENST00000393454 PPP1R42Q7Z4L9 355 aa10.74□□□□□ -0.69
TDP1-203ENST00000393454 SLC4A9Q96Q91 983 aa10.74□□□□□ -0.69
TDP1-203ENST00000393454 ZBTB3Q9H5J0 574 aa10.74□□□□□ -0.69
TDP1-203ENST00000393454 EXOC6BQ9Y2D4 811 aa10.74□□□□□ -0.69
TDP1-203ENST00000393454 SRGAP3O43295 1099 aa10.73□□□□□ -0.69
TDP1-203ENST00000393454 KCNQ2O43526 872 aa10.73□□□□□ -0.69
TDP1-203ENST00000393454 SMARCA5O60264 1052 aaPredicted RBP10.73□□□□□ -0.69
TDP1-203ENST00000393454 GCKRQ14397 625 aa10.73□□□□□ -0.69
TDP1-203ENST00000393454 C8orf34Q49A92 452 aa10.73□□□□□ -0.69
TDP1-203ENST00000393454 ARFGEF2Q9Y6D5 1785 aa10.73□□□□□ -0.69
TDP1-203ENST00000393454 AFDNP55196 1824 aaKnown RBP10.73□□□□□ -0.69
TDP1-203ENST00000393454 CYP19A1P11511 503 aaPredicted RBP10.73□□□□□ -0.69
TDP1-203ENST00000393454 ATP6V1AP38606 617 aa10.73□□□□□ -0.69
TDP1-203ENST00000393454 KIF6Q6ZMV9 814 aa10.73□□□□□ -0.69
TDP1-203ENST00000393454 NPM2Q86SE8 214 aaKnown RBP10.73□□□□□ -0.69
TDP1-203ENST00000393454 FBXO41Q8TF61 875 aa10.73□□□□□ -0.69
TDP1-203ENST00000393454 TRPC5Q9UL62 973 aaPredicted RBP10.73□□□□□ -0.69
TDP1-203ENST00000393454 JARID2Q92833 1246 aaPredicted RBP10.72□□□□□ -0.69
TDP1-203ENST00000393454 SUCLG2Q96I99 432 aa10.72□□□□□ -0.69
TDP1-203ENST00000393454 C16orf71Q8IYS4 520 aaPredicted RBP10.72□□□□□ -0.69
TDP1-203ENST00000393454 SSH3Q8TE77 659 aa10.72□□□□□ -0.69
TDP1-203ENST00000393454 SMARCC1Q92922 1105 aaPredicted RBP10.72□□□□□ -0.69
TDP1-203ENST00000393454 QTRT2Q9H974 415 aaKnown RBP10.72□□□□□ -0.69
TDP1-203ENST00000393454 A0A087WZG4 1122 aa10.71□□□□□ -0.69
TDP1-203ENST00000393454 LOC102724428A0A0B4J2F2 783 aa10.71□□□□□ -0.69
TDP1-203ENST00000393454 SURF6O75683 361 aaKnown RBP10.71□□□□□ -0.69
TDP1-203ENST00000393454 SIK1P57059 783 aa10.71□□□□□ -0.69
TDP1-203ENST00000393454 POLA2Q14181 598 aa10.71□□□□□ -0.69
TDP1-203ENST00000393454 FAM182BQ5T319 152 aa10.71□□□□□ -0.69
TDP1-203ENST00000393454 LRRCC1Q9C099 1032 aa10.71□□□□□ -0.69
TDP1-203ENST00000393454 UTYO14607 1347 aa10.71□□□□□ -0.7
TDP1-203ENST00000393454 PALLDQ8WX93 1383 aa10.71□□□□□ -0.7
TDP1-203ENST00000393454 ATRNO75882 1429 aa10.7□□□□□ -0.7
TDP1-203ENST00000393454 UBE3BQ7Z3V4 1068 aa10.7□□□□□ -0.7
TDP1-203ENST00000393454 BICC1Q9H694 974 aaKnown RBP10.7□□□□□ -0.7
TDP1-203ENST00000393454 ZBTB1Q9Y2K1 713 aa10.7□□□□□ -0.7
TDP1-203ENST00000393454 TJP1Q07157 1748 aa10.7□□□□□ -0.7
TDP1-203ENST00000393454 OS9Q13438 667 aaPredicted RBP10.7□□□□□ -0.7
TDP1-203ENST00000393454 SEPT12Q8IYM1 358 aa10.7□□□□□ -0.7
TDP1-203ENST00000393454 CWC25Q9NXE8 425 aaPredicted RBP10.7□□□□□ -0.7
TDP1-203ENST00000393454 THSD7AQ9UPZ6 1657 aa10.7□□□□□ -0.7
TDP1-203ENST00000393454 NUP188Q5SRE5 1749 aa10.7□□□□□ -0.7
TDP1-203ENST00000393454 PLEKHM2Q8IWE5 1019 aa10.69□□□□□ -0.7
TDP1-203ENST00000393454 IBTKQ9P2D0 1353 aaPredicted RBP10.69□□□□□ -0.7
TDP1-203ENST00000393454 RAB11FIP3O75154 756 aa10.69□□□□□ -0.7
TDP1-203ENST00000393454 ANP32AP39687 249 aaKnown RBP10.69□□□□□ -0.7
TDP1-203ENST00000393454 MTX1Q13505 466 aa10.69□□□□□ -0.7
TDP1-203ENST00000393454 RTL5Q5HYW3 569 aaPredicted RBP10.69□□□□□ -0.7
TDP1-203ENST00000393454 OTUD7AQ8TE49 926 aaPredicted RBP10.69□□□□□ -0.7
TDP1-203ENST00000393454 KAZALD1Q96I82 304 aa10.69□□□□□ -0.7
TDP1-203ENST00000393454 CCDC87Q9NVE4 849 aa10.69□□□□□ -0.7
TDP1-203ENST00000393454 IL6STP40189 918 aaPredicted RBP10.68□□□□□ -0.7
TDP1-203ENST00000393454 CRKLP46109 303 aaKnown RBP10.68□□□□□ -0.7
TDP1-203ENST00000393454 TCIRG1Q13488 830 aa10.68□□□□□ -0.7
TDP1-203ENST00000393454 ITPK1Q13572 414 aa10.68□□□□□ -0.7
TDP1-203ENST00000393454 HSP90AB4PQ58FF6 505 aa10.68□□□□□ -0.7
TDP1-203ENST00000393454 PTF1AQ7RTS3 328 aa10.68□□□□□ -0.7
TDP1-203ENST00000393454 CCDC191Q8NCU4 936 aa10.68□□□□□ -0.7
TDP1-203ENST00000393454 MAP3K15Q6ZN16 1313 aa10.68□□□□□ -0.7
TDP1-203ENST00000393454 BMP2KLQ5H9B9 411 aa10.67□□□□□ -0.7
TDP1-203ENST00000393454 EPHA10Q5JZY3 1008 aa10.67□□□□□ -0.7
TDP1-203ENST00000393454 DZIP3Q86Y13 1208 aaKnown RBP10.67□□□□□ -0.7
TDP1-203ENST00000393454 IL1RAPL2Q9NP60 686 aa10.67□□□□□ -0.7
TDP1-203ENST00000393454 TBC1D2BQ9UPU7 963 aa10.67□□□□□ -0.7
TDP1-203ENST00000393454 PA2G4Q9UQ80 394 aaKnown RBP10.67□□□□□ -0.7
TDP1-203ENST00000393454 H7C1W4 665 aa10.67□□□□□ -0.7
TDP1-203ENST00000393454 ONECUT3O60422 494 aaPredicted RBP10.67□□□□□ -0.7
TDP1-203ENST00000393454 INTS5Q6P9B9 1019 aaKnown RBP10.67□□□□□ -0.7
TDP1-203ENST00000393454 KIF1BPQ96EK5 621 aa10.67□□□□□ -0.7
TDP1-203ENST00000393454 G3BP1Q13283 466 aaKnown RBP eCLIP10.66□□□□□ -0.7
TDP1-203ENST00000393454 HLFQ16534 295 aa10.66□□□□□ -0.7
TDP1-203ENST00000393454 HSP90AB3PQ58FF7 597 aa10.66□□□□□ -0.7
TDP1-203ENST00000393454 GIGYF2Q6Y7W6 1299 aaKnown RBP10.66□□□□□ -0.7
TDP1-203ENST00000393454 RHPN1Q8TCX5 695 aa10.66□□□□□ -0.7
TDP1-203ENST00000393454 ISCA1Q9BUE6 129 aa10.66□□□□□ -0.7
TDP1-203ENST00000393454 CHMP3Q9Y3E7 222 aa10.66□□□□□ -0.7
TDP1-203ENST00000393454 SEC24BO95487 1268 aa10.65□□□□□ -0.7
TDP1-203ENST00000393454 GPTP24298 496 aa10.65□□□□□ -0.7
TDP1-203ENST00000393454 CASP7P55210 303 aa10.65□□□□□ -0.7
TDP1-203ENST00000393454 KCNQ4P56696 695 aa10.65□□□□□ -0.7
TDP1-203ENST00000393454 TTC22Q5TAA0 569 aa10.65□□□□□ -0.7
TDP1-203ENST00000393454 SIL1Q9H173 461 aa10.65□□□□□ -0.7
TDP1-203ENST00000393454 UPF2Q9HAU5 1272 aaKnown RBP10.65□□□□□ -0.7
TDP1-203ENST00000393454 NOP58Q9Y2X3 529 aaKnown RBP10.65□□□□□ -0.7
TDP1-203ENST00000393454 BTAF1O14981 1849 aa10.65□□□□□ -0.7
TDP1-203ENST00000393454 PDE1AP54750 535 aa10.65□□□□□ -0.7
TDP1-203ENST00000393454 EIF5P55010 431 aaKnown RBP10.65□□□□□ -0.7
TDP1-203ENST00000393454 NHSQ6T4R5 1651 aa10.65□□□□□ -0.71
TDP1-203ENST00000393454 ERVV-1B6SEH8 477 aa10.64□□□□□ -0.71
TDP1-203ENST00000393454 GSPT1P15170 499 aaKnown RBP10.64□□□□□ -0.71
TDP1-203ENST00000393454 MX1P20591 662 aa10.64□□□□□ -0.71
TDP1-203ENST00000393454 TRIM28Q13263 835 aaKnown RBP10.64□□□□□ -0.71
TDP1-203ENST00000393454 LMBR1LQ6UX01 489 aa10.64□□□□□ -0.71
TDP1-203ENST00000393454 NUTM1Q86Y26 1132 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms