RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 ARFGEF2Q9Y6D5 1785 aa22.93■■□□□ 1.26
USP39-201ENST00000323701 USP21Q9UK80 565 aa22.93■■□□□ 1.26
USP39-201ENST00000323701 ATP5J2-PTCD1G3V325 749 aa22.92■■□□□ 1.26
USP39-201ENST00000323701 GRM8O00222 908 aa22.92■■□□□ 1.26
USP39-201ENST00000323701 PLEKHM2Q8IWE5 1019 aa22.92■■□□□ 1.26
USP39-201ENST00000323701 JARID2Q92833 1246 aaPredicted RBP22.92■■□□□ 1.26
USP39-201ENST00000323701 A0A0G2JS52 829 aa22.91■■□□□ 1.26
USP39-201ENST00000323701 POLA2Q14181 598 aa22.91■■□□□ 1.26
USP39-201ENST00000323701 VSIG10Q8N0Z9 540 aa22.91■■□□□ 1.26
USP39-201ENST00000323701 SRGAP3O43295 1099 aa22.91■■□□□ 1.26
USP39-201ENST00000323701 GCKRQ14397 625 aa22.91■■□□□ 1.26
USP39-201ENST00000323701 PLBD2Q8NHP8 589 aa22.91■■□□□ 1.26
USP39-201ENST00000323701 SUCLG2Q96I99 432 aa22.91■■□□□ 1.26
USP39-201ENST00000323701 UTYO14607 1347 aa22.91■■□□□ 1.26
USP39-201ENST00000323701 KCNQ2O43526 872 aa22.9■■□□□ 1.26
USP39-201ENST00000323701 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.89■■□□□ 1.26
USP39-201ENST00000323701 NEXNQ0ZGT2 675 aa22.89■■□□□ 1.26
USP39-201ENST00000323701 ZBTB3Q9H5J0 574 aa22.89■■□□□ 1.26
USP39-201ENST00000323701 IBTKQ9P2D0 1353 aaPredicted RBP22.89■■□□□ 1.25
USP39-201ENST00000323701 ZNF330Q9Y3S2 320 aaPredicted RBP22.88■■□□□ 1.25
USP39-201ENST00000323701 NUP188Q5SRE5 1749 aa22.87■■□□□ 1.25
USP39-201ENST00000323701 CYP19A1P11511 503 aaPredicted RBP22.87■■□□□ 1.25
USP39-201ENST00000323701 GSPT1P15170 499 aaKnown RBP22.87■■□□□ 1.25
USP39-201ENST00000323701 EPHA10Q5JZY3 1008 aa22.87■■□□□ 1.25
USP39-201ENST00000323701 BICC1Q9H694 974 aaKnown RBP22.87■■□□□ 1.25
USP39-201ENST00000323701 MTX1Q13505 466 aa22.86■■□□□ 1.25
USP39-201ENST00000323701 EP400Q96L91 3159 aa22.86■■□□□ 1.25
USP39-201ENST00000323701 BMP2KLQ5H9B9 411 aa22.86■■□□□ 1.25
USP39-201ENST00000323701 PTF1AQ7RTS3 328 aa22.86■■□□□ 1.25
USP39-201ENST00000323701 TEX13AQ9BXU3 409 aaPredicted RBP22.85■■□□□ 1.25
USP39-201ENST00000323701 AFDNP55196 1824 aaKnown RBP22.85■■□□□ 1.25
USP39-201ENST00000323701 SURF6O75683 361 aaKnown RBP22.84■■□□□ 1.25
USP39-201ENST00000323701 STARD3NLO95772 234 aa22.84■■□□□ 1.25
USP39-201ENST00000323701 MEX3CQ5U5Q3 659 aaKnown RBP22.84■■□□□ 1.25
USP39-201ENST00000323701 LRRCC1Q9C099 1032 aa22.84■■□□□ 1.25
USP39-201ENST00000323701 TJP1Q07157 1748 aa22.84■■□□□ 1.25
USP39-201ENST00000323701 ANP32AP39687 249 aaKnown RBP22.84■■□□□ 1.25
USP39-201ENST00000323701 FAM182BQ5T319 152 aa22.84■■□□□ 1.25
USP39-201ENST00000323701 ZBTB1Q9Y2K1 713 aa22.84■■□□□ 1.25
USP39-201ENST00000323701 AFF2P51816 1311 aa22.83■■□□□ 1.25
USP39-201ENST00000323701 ZBTB47Q9UFB7 747 aaPredicted RBP22.83■■□□□ 1.25
USP39-201ENST00000323701 PA2G4Q9UQ80 394 aaKnown RBP22.83■■□□□ 1.25
USP39-201ENST00000323701 TSHZ3Q63HK5 1081 aa22.83■■□□□ 1.24
USP39-201ENST00000323701 UBE3BQ7Z3V4 1068 aa22.83■■□□□ 1.24
USP39-201ENST00000323701 IL1RAPL2Q9NP60 686 aa22.83■■□□□ 1.24
USP39-201ENST00000323701 SALL3Q9BXA9 1300 aa22.82■■□□□ 1.24
USP39-201ENST00000323701 A0A087WZG4 1122 aa22.82■■□□□ 1.24
USP39-201ENST00000323701 CASP7P55210 303 aa22.82■■□□□ 1.24
USP39-201ENST00000323701 RTL5Q5HYW3 569 aaPredicted RBP22.81■■□□□ 1.24
USP39-201ENST00000323701 TTC22Q5TAA0 569 aa22.8■■□□□ 1.24
USP39-201ENST00000323701 THSD7AQ9UPZ6 1657 aa22.79■■□□□ 1.24
USP39-201ENST00000323701 ITPK1Q13572 414 aa22.79■■□□□ 1.24
USP39-201ENST00000323701 KLHDC4Q8TBB5 520 aa22.79■■□□□ 1.24
USP39-201ENST00000323701 GJD4Q96KN9 370 aaPredicted RBP22.79■■□□□ 1.24
USP39-201ENST00000323701 LOC102724428A0A0B4J2F2 783 aa22.79■■□□□ 1.24
USP39-201ENST00000323701 PDE1AP54750 535 aa22.79■■□□□ 1.24
USP39-201ENST00000323701 SIK1P57059 783 aa22.79■■□□□ 1.24
USP39-201ENST00000323701 RHPN1Q8TCX5 695 aa22.79■■□□□ 1.24
USP39-201ENST00000323701 ARXQ96QS3 562 aa22.79■■□□□ 1.24
USP39-201ENST00000323701 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP22.79■■□□□ 1.24
USP39-201ENST00000323701 IPO9Q96P70 1041 aaKnown RBP22.78■■□□□ 1.24
USP39-201ENST00000323701 NOP58Q9Y2X3 529 aaKnown RBP22.78■■□□□ 1.24
USP39-201ENST00000323701 PALLDQ8WX93 1383 aa22.78■■□□□ 1.24
USP39-201ENST00000323701 ATP6V1AP38606 617 aa22.77■■□□□ 1.24
USP39-201ENST00000323701 HLFQ16534 295 aa22.77■■□□□ 1.24
USP39-201ENST00000323701 H7C1W4 665 aa22.76■■□□□ 1.23
USP39-201ENST00000323701 INTS5Q6P9B9 1019 aaKnown RBP22.76■■□□□ 1.23
USP39-201ENST00000323701 CWC25Q9NXE8 425 aaPredicted RBP22.76■■□□□ 1.23
USP39-201ENST00000323701 KCNQ4P56696 695 aa22.76■■□□□ 1.23
USP39-201ENST00000323701 NUTM1Q86Y26 1132 aa22.76■■□□□ 1.23
USP39-201ENST00000323701 ISCA1Q9BUE6 129 aa22.76■■□□□ 1.23
USP39-201ENST00000323701 RAB11FIP3O75154 756 aa22.75■■□□□ 1.23
USP39-201ENST00000323701 TCIRG1Q13488 830 aa22.75■■□□□ 1.23
USP39-201ENST00000323701 TBC1D9Q6ZT07 1266 aa22.75■■□□□ 1.23
USP39-201ENST00000323701 OSBPL3Q9H4L5 887 aa22.75■■□□□ 1.23
USP39-201ENST00000323701 HDAC5Q9UQL6 1122 aa22.75■■□□□ 1.23
USP39-201ENST00000323701 SDSP20132 328 aa22.74■■□□□ 1.23
USP39-201ENST00000323701 MFAP1P55081 439 aaKnown RBP22.74■■□□□ 1.23
USP39-201ENST00000323701 MAP3K15Q6ZN16 1313 aa22.74■■□□□ 1.23
USP39-201ENST00000323701 TBC1D2BQ9UPU7 963 aa22.74■■□□□ 1.23
USP39-201ENST00000323701 MYH14Q7Z406 1995 aaKnown RBP22.74■■□□□ 1.23
USP39-201ENST00000323701 MX1P20591 662 aa22.73■■□□□ 1.23
USP39-201ENST00000323701 CRKLP46109 303 aaKnown RBP22.73■■□□□ 1.23
USP39-201ENST00000323701 FOXO4P98177 505 aa22.73■■□□□ 1.23
USP39-201ENST00000323701 RABL6Q3YEC7 729 aaPredicted RBP22.73■■□□□ 1.23
USP39-201ENST00000323701 KIF6Q6ZMV9 814 aa22.73■■□□□ 1.23
USP39-201ENST00000323701 CCDC191Q8NCU4 936 aa22.73■■□□□ 1.23
USP39-201ENST00000323701 ATRNO75882 1429 aa22.73■■□□□ 1.23
USP39-201ENST00000323701 KIF1BPQ96EK5 621 aa22.73■■□□□ 1.23
USP39-201ENST00000323701 SIL1Q9H173 461 aa22.73■■□□□ 1.23
USP39-201ENST00000323701 RFX5P48382 616 aaPredicted RBP22.72■■□□□ 1.23
USP39-201ENST00000323701 COL15A1P39059 1388 aa22.72■■□□□ 1.23
USP39-201ENST00000323701 SASH1O94885 1247 aa22.72■■□□□ 1.23
USP39-201ENST00000323701 OS9Q13438 667 aaPredicted RBP22.72■■□□□ 1.23
USP39-201ENST00000323701 IL6STP40189 918 aaPredicted RBP22.71■■□□□ 1.23
USP39-201ENST00000323701 GIGYF2Q6Y7W6 1299 aaKnown RBP22.71■■□□□ 1.23
USP39-201ENST00000323701 TBC1D32Q96NH3 1257 aa22.71■■□□□ 1.23
USP39-201ENST00000323701 CCDC87Q9NVE4 849 aa22.71■■□□□ 1.23
USP39-201ENST00000323701 GPTP24298 496 aa22.7■■□□□ 1.23
USP39-201ENST00000323701 EIF5P55010 431 aaKnown RBP22.7■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms