RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 ZCCHC11Q5TAX3 1644 aaKnown RBP7.49□□□□□ -1.21
VPS35-201ENST00000299138 LMOD2Q6P5Q4 547 aa7.49□□□□□ -1.21
VPS35-201ENST00000299138 TUBB2BQ9BVA1 445 aa7.49□□□□□ -1.21
VPS35-201ENST00000299138 TRIM35Q9UPQ4 493 aa7.49□□□□□ -1.21
VPS35-201ENST00000299138 DAAM2Q86T65 1068 aa7.48□□□□□ -1.21
VPS35-201ENST00000299138 ANKRD18AQ8IVF6 992 aa7.48□□□□□ -1.21
VPS35-201ENST00000299138 PAIP2Q9BPZ3 127 aaKnown RBP7.48□□□□□ -1.21
VPS35-201ENST00000299138 FAM184BQ9ULE4 1060 aa7.48□□□□□ -1.21
VPS35-201ENST00000299138 POTEB2H3BUK9 544 aa7.48□□□□□ -1.21
VPS35-201ENST00000299138 DMTNQ08495 405 aa7.48□□□□□ -1.21
VPS35-201ENST00000299138 ANO2Q9NQ90 1003 aa7.48□□□□□ -1.21
VPS35-201ENST00000299138 EID1Q9Y6B2 187 aa7.48□□□□□ -1.21
VPS35-201ENST00000299138 SHTN1A0MZ66 631 aa7.48□□□□□ -1.21
VPS35-201ENST00000299138 HOOK1Q9UJC3 728 aaKnown RBP7.48□□□□□ -1.21
VPS35-201ENST00000299138 ADGRB1O14514 1584 aa7.48□□□□□ -1.21
VPS35-201ENST00000299138 TTC21AQ8NDW8 1320 aa7.48□□□□□ -1.21
VPS35-201ENST00000299138 POLR3GO15318 223 aaPredicted RBP7.48□□□□□ -1.21
VPS35-201ENST00000299138 SMC2O95347 1197 aa7.48□□□□□ -1.21
VPS35-201ENST00000299138 FILIP1Q7Z7B0 1213 aa7.48□□□□□ -1.21
VPS35-201ENST00000299138 TMX3Q96JJ7 454 aa7.48□□□□□ -1.21
VPS35-201ENST00000299138 TRIM5Q9C035 493 aa7.48□□□□□ -1.21
VPS35-201ENST00000299138 ZSCAN16Q9H4T2 348 aaPredicted RBP7.48□□□□□ -1.21
VPS35-201ENST00000299138 ZSCAN22P10073 491 aaPredicted RBP7.47□□□□□ -1.21
VPS35-201ENST00000299138 TSR2Q969E8 191 aaKnown RBP7.47□□□□□ -1.21
VPS35-201ENST00000299138 ESYT1Q9BSJ8 1104 aa7.47□□□□□ -1.21
VPS35-201ENST00000299138 A0A1W2PP64 1363 aa7.47□□□□□ -1.21
VPS35-201ENST00000299138 FYB1O15117 783 aa7.47□□□□□ -1.21
VPS35-201ENST00000299138 CDC25BP30305 580 aa7.47□□□□□ -1.21
VPS35-201ENST00000299138 TMCO3Q6UWJ1 677 aa7.47□□□□□ -1.21
VPS35-201ENST00000299138 CCDC47Q96A33 483 aaKnown RBP7.47□□□□□ -1.21
VPS35-201ENST00000299138 DDX23Q9BUQ8 820 aaKnown RBP7.47□□□□□ -1.21
VPS35-201ENST00000299138 FAM107BQ9H098 131 aa7.47□□□□□ -1.21
VPS35-201ENST00000299138 CYP46A1Q9Y6A2 500 aa7.47□□□□□ -1.21
VPS35-201ENST00000299138 ABCC3O15438 1527 aa7.47□□□□□ -1.21
VPS35-201ENST00000299138 PDE1AP54750 535 aa7.47□□□□□ -1.21
VPS35-201ENST00000299138 SARNPP82979 210 aaKnown RBP7.47□□□□□ -1.21
VPS35-201ENST00000299138 SF3B2Q13435 895 aaKnown RBP7.47□□□□□ -1.21
VPS35-201ENST00000299138 RILPL2Q969X0 211 aa7.47□□□□□ -1.21
VPS35-201ENST00000299138 KIF1BPQ96EK5 621 aa7.47□□□□□ -1.21
VPS35-201ENST00000299138 ZNF396Q96N95 335 aaPredicted RBP7.47□□□□□ -1.21
VPS35-201ENST00000299138 NUP62CLQ9H1M0 184 aa7.47□□□□□ -1.21
VPS35-201ENST00000299138 HMGB1P09429 215 aaKnown RBP7.47□□□□□ -1.21
VPS35-201ENST00000299138 CCDC73Q6ZRK6 1079 aa7.47□□□□□ -1.21
VPS35-201ENST00000299138 KRT222Q8N1A0 295 aa7.47□□□□□ -1.21
VPS35-201ENST00000299138 WDR66Q8TBY9 1149 aa7.47□□□□□ -1.21
VPS35-201ENST00000299138 DNAAF4Q8WXU2 420 aa7.47□□□□□ -1.21
VPS35-201ENST00000299138 EPS15P42566 896 aa7.47□□□□□ -1.21
VPS35-201ENST00000299138 AKAP17AQ02040 695 aaKnown RBP7.47□□□□□ -1.21
VPS35-201ENST00000299138 BMS1Q14692 1282 aaKnown RBP7.47□□□□□ -1.21
VPS35-201ENST00000299138 ABCA6Q8N139 1617 aa7.47□□□□□ -1.21
VPS35-201ENST00000299138 CEP57L1Q8IYX8 460 aa7.47□□□□□ -1.21
VPS35-201ENST00000299138 SLC26A8Q96RN1 970 aa7.47□□□□□ -1.21
VPS35-201ENST00000299138 ZNF330Q9Y3S2 320 aaPredicted RBP7.47□□□□□ -1.21
VPS35-201ENST00000299138 CBFA2T2O43439 604 aa7.46□□□□□ -1.21
VPS35-201ENST00000299138 CCDC150Q8NCX0 1101 aa7.46□□□□□ -1.21
VPS35-201ENST00000299138 IQSEC3Q9UPP2 1182 aaPredicted RBP7.46□□□□□ -1.21
VPS35-201ENST00000299138 CCDC61Q9Y6R9 512 aa7.46□□□□□ -1.21
VPS35-201ENST00000299138 YTHDC2Q9H6S0 1430 aaKnown RBP7.46□□□□□ -1.21
VPS35-201ENST00000299138 SYCE3A1L190 88 aa7.46□□□□□ -1.21
VPS35-201ENST00000299138 MPHOSPH10O00566 681 aaKnown RBP7.46□□□□□ -1.21
VPS35-201ENST00000299138 CPSF2Q9P2I0 782 aaKnown RBP7.46□□□□□ -1.21
VPS35-201ENST00000299138 NPATQ14207 1427 aa7.46□□□□□ -1.22
VPS35-201ENST00000299138 KDM4AO75164 1064 aa7.46□□□□□ -1.22
VPS35-201ENST00000299138 TMEM132EQ6IEE7 984 aa7.46□□□□□ -1.22
VPS35-201ENST00000299138 ZNF397Q8NF99 534 aaPredicted RBP7.46□□□□□ -1.22
VPS35-201ENST00000299138 GBP3Q9H0R5 595 aa7.46□□□□□ -1.22
VPS35-201ENST00000299138 ALDH8A1Q9H2A2 487 aaPredicted RBP7.46□□□□□ -1.22
VPS35-201ENST00000299138 CHL1O00533 1208 aa7.46□□□□□ -1.22
VPS35-201ENST00000299138 SOX12O15370 315 aa7.46□□□□□ -1.22
VPS35-201ENST00000299138 TCEAL9Q9UHQ7 104 aa7.46□□□□□ -1.22
VPS35-201ENST00000299138 RFX7Q2KHR2 1363 aa7.46□□□□□ -1.22
VPS35-201ENST00000299138 PRIM1P49642 420 aaKnown RBP7.46□□□□□ -1.22
VPS35-201ENST00000299138 ATP8B2P98198 1209 aa7.46□□□□□ -1.22
VPS35-201ENST00000299138 GAS2L3Q86XJ1 694 aa7.46□□□□□ -1.22
VPS35-201ENST00000299138 CCDC97Q96F63 343 aaPredicted RBP7.46□□□□□ -1.22
VPS35-201ENST00000299138 ERLIN1O75477 346 aa7.45□□□□□ -1.22
VPS35-201ENST00000299138 KIF18AQ8NI77 898 aa7.45□□□□□ -1.22
VPS35-201ENST00000299138 MRFAP1L1Q96HT8 127 aa7.45□□□□□ -1.22
VPS35-201ENST00000299138 PXDNLA1KZ92 1463 aa7.45□□□□□ -1.22
VPS35-201ENST00000299138 VGLL3A8MV65 326 aa7.45□□□□□ -1.22
VPS35-201ENST00000299138 STX6O43752 255 aa7.45□□□□□ -1.22
VPS35-201ENST00000299138 SDSP20132 328 aa7.45□□□□□ -1.22
VPS35-201ENST00000299138 CCDC181Q5TID7 509 aa7.45□□□□□ -1.22
VPS35-201ENST00000299138 CEP85Q6P2H3 762 aa7.45□□□□□ -1.22
VPS35-201ENST00000299138 PPM1EQ8WY54 764 aa7.45□□□□□ -1.22
VPS35-201ENST00000299138 ERO1AQ96HE7 468 aa7.45□□□□□ -1.22
VPS35-201ENST00000299138 FAM114A1Q8IWE2 563 aa7.45□□□□□ -1.22
VPS35-201ENST00000299138 RBSNQ9H1K0 784 aa7.45□□□□□ -1.22
VPS35-201ENST00000299138 IMPACTQ9P2X3 320 aa7.45□□□□□ -1.22
VPS35-201ENST00000299138 SPDYE4A6NLX3 237 aa7.45□□□□□ -1.22
VPS35-201ENST00000299138 GIGYF1O75420 1035 aaPredicted RBP7.45□□□□□ -1.22
VPS35-201ENST00000299138 TMCO4Q5TGY1 634 aa7.45□□□□□ -1.22
VPS35-201ENST00000299138 GGNBP2Q9H3C7 697 aa7.45□□□□□ -1.22
VPS35-201ENST00000299138 KIF1BO60333 1816 aa7.45□□□□□ -1.22
VPS35-201ENST00000299138 VPS37CA5D8V6 355 aaPredicted RBP7.45□□□□□ -1.22
VPS35-201ENST00000299138 UBTFL1P0CB47 393 aaPredicted RBP7.45□□□□□ -1.22
VPS35-201ENST00000299138 JMYQ8N9B5 988 aa7.45□□□□□ -1.22
VPS35-201ENST00000299138 LRRFIP2Q9Y608 721 aaKnown RBP7.45□□□□□ -1.22
VPS35-201ENST00000299138 DHX16O60231 1041 aaKnown RBP7.44□□□□□ -1.22
VPS35-201ENST00000299138 NPM3O75607 178 aaKnown RBP7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms