RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 UTYO14607 1347 aa17.67■□□□□ 0.42
C9orf3-202ENST00000297979 NBPF26B4DH59 902 aa17.67■□□□□ 0.42
C9orf3-202ENST00000297979 GRM8O00222 908 aa17.67■□□□□ 0.42
C9orf3-202ENST00000297979 IGKV5-2P06315 115 aa17.67■□□□□ 0.42
C9orf3-202ENST00000297979 NBPF14Q5TI25 921 aa17.67■□□□□ 0.42
C9orf3-202ENST00000297979 NBPF10Q6P3W6 841 aaKnown RBP17.67■□□□□ 0.42
C9orf3-202ENST00000297979 NBPF15Q8N660 670 aa17.67■□□□□ 0.42
C9orf3-202ENST00000297979 ASAP1Q9ULH1 1129 aa17.67■□□□□ 0.42
C9orf3-202ENST00000297979 DOT1LQ8TEK3 1739 aa17.66■□□□□ 0.42
C9orf3-202ENST00000297979 DDB1Q16531 1140 aa17.66■□□□□ 0.42
C9orf3-202ENST00000297979 C16orf71Q8IYS4 520 aaPredicted RBP17.66■□□□□ 0.42
C9orf3-202ENST00000297979 UPF2Q9HAU5 1272 aaKnown RBP17.66■□□□□ 0.42
C9orf3-202ENST00000297979 VSIG10Q8N0Z9 540 aa17.66■□□□□ 0.42
C9orf3-202ENST00000297979 DDRGK1Q96HY6 314 aa17.66■□□□□ 0.42
C9orf3-202ENST00000297979 MYD88Q99836 296 aa17.66■□□□□ 0.42
C9orf3-202ENST00000297979 LRRCC1Q9C099 1032 aa17.66■□□□□ 0.42
C9orf3-202ENST00000297979 ATG3Q9NT62 314 aa17.66■□□□□ 0.42
C9orf3-202ENST00000297979 NEURL1BA8MQ27 555 aa17.65■□□□□ 0.42
C9orf3-202ENST00000297979 SRGAP3O43295 1099 aa17.65■□□□□ 0.42
C9orf3-202ENST00000297979 BARGINQ6ZT62 677 aa17.65■□□□□ 0.42
C9orf3-202ENST00000297979 CCDC9Q9Y3X0 531 aaKnown RBP17.65■□□□□ 0.42
C9orf3-202ENST00000297979 MTX1Q13505 466 aa17.65■□□□□ 0.42
C9orf3-202ENST00000297979 PLBD2Q8NHP8 589 aa17.65■□□□□ 0.42
C9orf3-202ENST00000297979 OTUD7AQ8TE49 926 aaPredicted RBP17.64■□□□□ 0.41
C9orf3-202ENST00000297979 AFDNP55196 1824 aaKnown RBP17.64■□□□□ 0.41
C9orf3-202ENST00000297979 A1BGP04217 495 aa17.64■□□□□ 0.41
C9orf3-202ENST00000297979 UNC5CLQ8IV45 518 aa17.64■□□□□ 0.41
C9orf3-202ENST00000297979 TEX13AQ9BXU3 409 aaPredicted RBP17.64■□□□□ 0.41
C9orf3-202ENST00000297979 NUP188Q5SRE5 1749 aa17.63■□□□□ 0.41
C9orf3-202ENST00000297979 TTC22Q5TAA0 569 aa17.63■□□□□ 0.41
C9orf3-202ENST00000297979 GCKRQ14397 625 aa17.63■□□□□ 0.41
C9orf3-202ENST00000297979 GSPT1P15170 499 aaKnown RBP17.62■□□□□ 0.41
C9orf3-202ENST00000297979 CERKQ8TCT0 537 aa17.62■□□□□ 0.41
C9orf3-202ENST00000297979 C8orf37Q96NL8 207 aa17.62■□□□□ 0.41
C9orf3-202ENST00000297979 RAB11FIP3O75154 756 aa17.62■□□□□ 0.41
C9orf3-202ENST00000297979 NOP58Q9Y2X3 529 aaKnown RBP17.62■□□□□ 0.41
C9orf3-202ENST00000297979 SURF6O75683 361 aaKnown RBP17.62■□□□□ 0.41
C9orf3-202ENST00000297979 SYTL4Q96C24 671 aaPredicted RBP17.62■□□□□ 0.41
C9orf3-202ENST00000297979 SUCLG2Q96I99 432 aa17.62■□□□□ 0.41
C9orf3-202ENST00000297979 RBM42Q9BTD8 480 aaKnown RBP17.62■□□□□ 0.41
C9orf3-202ENST00000297979 PAXIP1Q6ZW49 1069 aaPredicted RBP17.61■□□□□ 0.41
C9orf3-202ENST00000297979 NGLY1Q96IV0 654 aa17.61■□□□□ 0.41
C9orf3-202ENST00000297979 SPATA31A6Q5VVP1 1343 aa17.61■□□□□ 0.41
C9orf3-202ENST00000297979 BCL9LQ86UU0 1499 aa17.61■□□□□ 0.41
C9orf3-202ENST00000297979 DNAJC10Q8IXB1 793 aa17.61■□□□□ 0.41
C9orf3-202ENST00000297979 PRIM1P49642 420 aaKnown RBP17.6■□□□□ 0.41
C9orf3-202ENST00000297979 HSP90AB4PQ58FF6 505 aa17.6■□□□□ 0.41
C9orf3-202ENST00000297979 TBC1D32Q96NH3 1257 aa17.6■□□□□ 0.41
C9orf3-202ENST00000297979 OSBPL3Q9H4L5 887 aa17.6■□□□□ 0.41
C9orf3-202ENST00000297979 KAT6BQ8WYB5 2073 aa17.6■□□□□ 0.41
C9orf3-202ENST00000297979 TTLL7Q6ZT98 887 aa17.6■□□□□ 0.41
C9orf3-202ENST00000297979 STARD3NLO95772 234 aa17.59■□□□□ 0.41
C9orf3-202ENST00000297979 MFAP1P55081 439 aaKnown RBP17.59■□□□□ 0.41
C9orf3-202ENST00000297979 RBM10P98175 930 aaKnown RBP17.59■□□□□ 0.41
C9orf3-202ENST00000297979 KAZALD1Q96I82 304 aa17.59■□□□□ 0.41
C9orf3-202ENST00000297979 SALL3Q9BXA9 1300 aa17.59■□□□□ 0.41
C9orf3-202ENST00000297979 VPS72Q15906 364 aa17.59■□□□□ 0.41
C9orf3-202ENST00000297979 MARCH10Q8NA82 808 aaPredicted RBP17.59■□□□□ 0.41
C9orf3-202ENST00000297979 BICC1Q9H694 974 aaKnown RBP17.59■□□□□ 0.41
C9orf3-202ENST00000297979 CDC45O75419 566 aa17.58■□□□□ 0.41
C9orf3-202ENST00000297979 PDE1AP54750 535 aa17.58■□□□□ 0.41
C9orf3-202ENST00000297979 ATP5J2-PTCD1G3V325 749 aa17.58■□□□□ 0.4
C9orf3-202ENST00000297979 DEKP35659 375 aaKnown RBP17.58■□□□□ 0.4
C9orf3-202ENST00000297979 KIF1BPQ96EK5 621 aa17.58■□□□□ 0.4
C9orf3-202ENST00000297979 TBC1D9Q6ZT07 1266 aa17.57■□□□□ 0.4
C9orf3-202ENST00000297979 RHPN1Q8TCX5 695 aa17.57■□□□□ 0.4
C9orf3-202ENST00000297979 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.57■□□□□ 0.4
C9orf3-202ENST00000297979 MX1P20591 662 aa17.57■□□□□ 0.4
C9orf3-202ENST00000297979 FNBP4Q8N3X1 1017 aaPredicted RBP17.57■□□□□ 0.4
C9orf3-202ENST00000297979 COL15A1P39059 1388 aa17.57■□□□□ 0.4
C9orf3-202ENST00000297979 TJP1Q07157 1748 aa17.56■□□□□ 0.4
C9orf3-202ENST00000297979 SLC4A9Q96Q91 983 aa17.56■□□□□ 0.4
C9orf3-202ENST00000297979 ZBTB3Q9H5J0 574 aa17.56■□□□□ 0.4
C9orf3-202ENST00000297979 IL1RAPL2Q9NP60 686 aa17.56■□□□□ 0.4
C9orf3-202ENST00000297979 A0A087WZG4 1122 aa17.55■□□□□ 0.4
C9orf3-202ENST00000297979 FAM98CQ17RN3 349 aaKnown RBP17.55■□□□□ 0.4
C9orf3-202ENST00000297979 SDSP20132 328 aa17.55■□□□□ 0.4
C9orf3-202ENST00000297979 OS9Q13438 667 aaPredicted RBP17.55■□□□□ 0.4
C9orf3-202ENST00000297979 UBE3BQ7Z3V4 1068 aa17.55■□□□□ 0.4
C9orf3-202ENST00000297979 C22orf23Q9BZE7 217 aa17.55■□□□□ 0.4
C9orf3-202ENST00000297979 TUBGCP6Q96RT7 1819 aa17.54■□□□□ 0.4
C9orf3-202ENST00000297979 CYP19A1P11511 503 aaPredicted RBP17.54■□□□□ 0.4
C9orf3-202ENST00000297979 ACSBG1Q96GR2 724 aa17.54■□□□□ 0.4
C9orf3-202ENST00000297979 STAP2Q9UGK3 403 aa17.54■□□□□ 0.4
C9orf3-202ENST00000297979 ZNF330Q9Y3S2 320 aaPredicted RBP17.54■□□□□ 0.4
C9orf3-202ENST00000297979 AOX1Q06278 1338 aa17.54■□□□□ 0.4
C9orf3-202ENST00000297979 ERC1Q8IUD2 1116 aa17.54■□□□□ 0.4
C9orf3-202ENST00000297979 CWC25Q9NXE8 425 aaPredicted RBP17.54■□□□□ 0.4
C9orf3-202ENST00000297979 A0A0G2JS52 829 aa17.53■□□□□ 0.4
C9orf3-202ENST00000297979 KIF6Q6ZMV9 814 aa17.53■□□□□ 0.4
C9orf3-202ENST00000297979 CASP7P55210 303 aa17.53■□□□□ 0.4
C9orf3-202ENST00000297979 EPHA10Q5JZY3 1008 aa17.53■□□□□ 0.4
C9orf3-202ENST00000297979 USP21Q9UK80 565 aa17.53■□□□□ 0.4
C9orf3-202ENST00000297979 PA2G4Q9UQ80 394 aaKnown RBP17.53■□□□□ 0.4
C9orf3-202ENST00000297979 CCDC191Q8NCU4 936 aa17.53■□□□□ 0.4
C9orf3-202ENST00000297979 ZMYND15Q9H091 742 aa17.53■□□□□ 0.4
C9orf3-202ENST00000297979 TSHZ3Q63HK5 1081 aa17.52■□□□□ 0.4
C9orf3-202ENST00000297979 JARID2Q92833 1246 aaPredicted RBP17.52■□□□□ 0.4
C9orf3-202ENST00000297979 H7C1W4 665 aa17.52■□□□□ 0.39
C9orf3-202ENST00000297979 RABL6Q3YEC7 729 aaPredicted RBP17.52■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 277.8 ms