RNA–Protein interactions for RNA: ENST00000244302.8

HIF3A-201, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 1 (best)

Gene HIF3A, Length 2,101 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-201ENST00000244302 HLFQ16534 295 aa16.23■□□□□ 0.19
HIF3A-201ENST00000244302 CEP85Q6P2H3 762 aa16.23■□□□□ 0.19
HIF3A-201ENST00000244302 DDX58O95786 925 aaKnown RBP16.22■□□□□ 0.19
HIF3A-201ENST00000244302 AMIGO3Q86WK7 504 aa16.22■□□□□ 0.19
HIF3A-201ENST00000244302 METTL22Q9BUU2 404 aaPredicted RBP16.22■□□□□ 0.19
HIF3A-201ENST00000244302 TEX13AQ9BXU3 409 aaPredicted RBP16.22■□□□□ 0.19
HIF3A-201ENST00000244302 RWDD1Q9H446 243 aaPredicted RBP16.22■□□□□ 0.19
HIF3A-201ENST00000244302 PNMA6EA0A0J9YXQ4 647 aa16.22■□□□□ 0.19
HIF3A-201ENST00000244302 ATP10DQ9P241 1426 aa16.21■□□□□ 0.19
HIF3A-201ENST00000244302 NEURL1BA8MQ27 555 aa16.21■□□□□ 0.19
HIF3A-201ENST00000244302 RGS3P49796 1198 aa16.21■□□□□ 0.19
HIF3A-201ENST00000244302 HDAC1Q13547 482 aaPredicted RBP16.21■□□□□ 0.19
HIF3A-201ENST00000244302 PLBD2Q8NHP8 589 aa16.21■□□□□ 0.19
HIF3A-201ENST00000244302 LAMB4A4D0S4 1761 aa16.21■□□□□ 0.19
HIF3A-201ENST00000244302 AAMPQ13685 434 aa16.21■□□□□ 0.18
HIF3A-201ENST00000244302 LINS1Q8NG48 757 aa16.21■□□□□ 0.18
HIF3A-201ENST00000244302 LRRC4BQ9NT99 713 aa16.21■□□□□ 0.18
HIF3A-201ENST00000244302 ERBB4Q15303 1308 aa16.2■□□□□ 0.18
HIF3A-201ENST00000244302 TJP1Q07157 1748 aa16.2■□□□□ 0.18
HIF3A-201ENST00000244302 SMARCC1Q92922 1105 aaPredicted RBP16.2■□□□□ 0.18
HIF3A-201ENST00000244302 KAZALD1Q96I82 304 aa16.2■□□□□ 0.18
HIF3A-201ENST00000244302 PDZRN3Q9UPQ7 1066 aa16.2■□□□□ 0.18
HIF3A-201ENST00000244302 MYH14Q7Z406 1995 aaKnown RBP16.2■□□□□ 0.18
HIF3A-201ENST00000244302 APBB1O00213 710 aa16.19■□□□□ 0.18
HIF3A-201ENST00000244302 GNAI2P04899 355 aa16.19■□□□□ 0.18
HIF3A-201ENST00000244302 UBTFL1P0CB47 393 aaPredicted RBP16.19■□□□□ 0.18
HIF3A-201ENST00000244302 ANKRD44Q8N8A2 993 aa16.19■□□□□ 0.18
HIF3A-201ENST00000244302 CCDC87Q9NVE4 849 aa16.19■□□□□ 0.18
HIF3A-201ENST00000244302 C9orf78Q9NZ63 289 aaPredicted RBP16.19■□□□□ 0.18
HIF3A-201ENST00000244302 BTAF1O14981 1849 aa16.18■□□□□ 0.18
HIF3A-201ENST00000244302 GCKRQ14397 625 aa16.18■□□□□ 0.18
HIF3A-201ENST00000244302 EPHA10Q5JZY3 1008 aa16.18■□□□□ 0.18
HIF3A-201ENST00000244302 FAM196AQ6ZSG2 479 aa16.18■□□□□ 0.18
HIF3A-201ENST00000244302 SYNE4Q8N205 404 aa16.18■□□□□ 0.18
HIF3A-201ENST00000244302 SUCLG2Q96I99 432 aa16.18■□□□□ 0.18
HIF3A-201ENST00000244302 BCL11BQ9C0K0 894 aaPredicted RBP16.18■□□□□ 0.18
HIF3A-201ENST00000244302 CCNL1Q9UK58 526 aaPredicted RBP16.18■□□□□ 0.18
HIF3A-201ENST00000244302 GPTP24298 496 aa16.18■□□□□ 0.18
HIF3A-201ENST00000244302 EIF5P55010 431 aaKnown RBP16.18■□□□□ 0.18
HIF3A-201ENST00000244302 SBF2Q86WG5 1849 aa16.17■□□□□ 0.18
HIF3A-201ENST00000244302 GNAI3P08754 354 aa16.17■□□□□ 0.18
HIF3A-201ENST00000244302 PXDNLA1KZ92 1463 aa16.17■□□□□ 0.18
HIF3A-201ENST00000244302 GRM8O00222 908 aa16.16■□□□□ 0.18
HIF3A-201ENST00000244302 ALDH1L1O75891 902 aa16.16■□□□□ 0.18
HIF3A-201ENST00000244302 NEXNQ0ZGT2 675 aa16.16■□□□□ 0.18
HIF3A-201ENST00000244302 SMC5Q8IY18 1101 aa16.16■□□□□ 0.18
HIF3A-201ENST00000244302 PROM2Q8N271 834 aa16.16■□□□□ 0.18
HIF3A-201ENST00000244302 DZIP3Q86Y13 1208 aaKnown RBP16.16■□□□□ 0.18
HIF3A-201ENST00000244302 A0A087WZG4 1122 aa16.15■□□□□ 0.18
HIF3A-201ENST00000244302 SMARCA5O60264 1052 aaPredicted RBP16.15■□□□□ 0.18
HIF3A-201ENST00000244302 PDE4AP27815 886 aa16.15■□□□□ 0.18
HIF3A-201ENST00000244302 IL6STP40189 918 aaPredicted RBP16.15■□□□□ 0.18
HIF3A-201ENST00000244302 UBE3BQ7Z3V4 1068 aa16.15■□□□□ 0.18
HIF3A-201ENST00000244302 PPP1R42Q7Z4L9 355 aa16.15■□□□□ 0.18
HIF3A-201ENST00000244302 LNPKQ9C0E8 428 aa16.15■□□□□ 0.18
HIF3A-201ENST00000244302 CHMP4BQ9H444 224 aaKnown RBP16.15■□□□□ 0.18
HIF3A-201ENST00000244302 MAP3K15Q6ZN16 1313 aa16.15■□□□□ 0.18
HIF3A-201ENST00000244302 ATP8B2P98198 1209 aa16.15■□□□□ 0.18
HIF3A-201ENST00000244302 ANKRD45Q5TZF3 282 aa16.15■□□□□ 0.18
HIF3A-201ENST00000244302 RPAP2Q8IXW5 612 aaPredicted RBP16.15■□□□□ 0.18
HIF3A-201ENST00000244302 EXOC6BQ9Y2D4 811 aa16.15■□□□□ 0.18
HIF3A-201ENST00000244302 NHSQ6T4R5 1651 aa16.14■□□□□ 0.18
HIF3A-201ENST00000244302 TCIRG1Q13488 830 aa16.14■□□□□ 0.17
HIF3A-201ENST00000244302 KIF6Q6ZMV9 814 aa16.14■□□□□ 0.17
HIF3A-201ENST00000244302 C16orf71Q8IYS4 520 aaPredicted RBP16.14■□□□□ 0.17
HIF3A-201ENST00000244302 BICC1Q9H694 974 aaKnown RBP16.14■□□□□ 0.17
HIF3A-201ENST00000244302 DCTPP1Q9H773 170 aa16.13■□□□□ 0.17
HIF3A-201ENST00000244302 NOP58Q9Y2X3 529 aaKnown RBP16.13■□□□□ 0.17
HIF3A-201ENST00000244302 ARFGEF2Q9Y6D5 1785 aa16.13■□□□□ 0.17
HIF3A-201ENST00000244302 FAM177BA6PVY3 158 aa16.13■□□□□ 0.17
HIF3A-201ENST00000244302 CASP7P55210 303 aa16.13■□□□□ 0.17
HIF3A-201ENST00000244302 ILDR1Q86SU0 546 aaPredicted RBP16.13■□□□□ 0.17
HIF3A-201ENST00000244302 KLHDC4Q8TBB5 520 aa16.13■□□□□ 0.17
HIF3A-201ENST00000244302 SRGAP3O43295 1099 aa16.12■□□□□ 0.17
HIF3A-201ENST00000244302 GIGYF2Q6Y7W6 1299 aaKnown RBP16.12■□□□□ 0.17
HIF3A-201ENST00000244302 FAM89AQ96GI7 184 aa16.12■□□□□ 0.17
HIF3A-201ENST00000244302 ISCA1Q9BUE6 129 aa16.12■□□□□ 0.17
HIF3A-201ENST00000244302 PA2G4Q9UQ80 394 aaKnown RBP16.12■□□□□ 0.17
HIF3A-201ENST00000244302 GNPATO15228 680 aa16.12■□□□□ 0.17
HIF3A-201ENST00000244302 ANP32AP39687 249 aaKnown RBP16.12■□□□□ 0.17
HIF3A-201ENST00000244302 SRP68Q9UHB9 627 aaKnown RBP16.12■□□□□ 0.17
HIF3A-201ENST00000244302 UTYO14607 1347 aa16.11■□□□□ 0.17
HIF3A-201ENST00000244302 PHF14O94880 888 aa16.11■□□□□ 0.17
HIF3A-201ENST00000244302 CAMTA2O94983 1202 aa16.11■□□□□ 0.17
HIF3A-201ENST00000244302 OTUD7AQ8TE49 926 aaPredicted RBP16.11■□□□□ 0.17
HIF3A-201ENST00000244302 APBA3O96018 575 aa16.1■□□□□ 0.17
HIF3A-201ENST00000244302 NUCB1Q02818 461 aa16.1■□□□□ 0.17
HIF3A-201ENST00000244302 CWC25Q9NXE8 425 aaPredicted RBP16.1■□□□□ 0.17
HIF3A-201ENST00000244302 UBN2Q6ZU65 1347 aa16.1■□□□□ 0.17
HIF3A-201ENST00000244302 NUP188Q5SRE5 1749 aa16.1■□□□□ 0.17
HIF3A-201ENST00000244302 H7C1W4 665 aa16.1■□□□□ 0.17
HIF3A-201ENST00000244302 NPM2Q86SE8 214 aaKnown RBP16.1■□□□□ 0.17
HIF3A-201ENST00000244302 CCDC85AQ96PX6 553 aaPredicted RBP16.1■□□□□ 0.17
HIF3A-201ENST00000244302 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.1■□□□□ 0.17
HIF3A-201ENST00000244302 GOLGB1Q14789 3259 aaKnown RBP16.09■□□□□ 0.17
HIF3A-201ENST00000244302 N4BP2Q86UW6 1770 aaPredicted RBP16.09■□□□□ 0.17
HIF3A-201ENST00000244302 CHD1LQ86WJ1 897 aa16.09■□□□□ 0.17
HIF3A-201ENST00000244302 SSH3Q8TE77 659 aa16.09■□□□□ 0.17
HIF3A-201ENST00000244302 NLRP10Q86W26 655 aa16.09■□□□□ 0.17
HIF3A-201ENST00000244302 COL15A1P39059 1388 aa16.08■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms