RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 ZNF853P0CG23 659 aa2.58□□□□□ -2
CD44-239ENST00000639002 MFAP2P55001 183 aa2.58□□□□□ -2
CD44-239ENST00000639002 KRTAP10-10P60014 251 aa2.58□□□□□ -2
CD44-239ENST00000639002 PRKCEQ02156 737 aa2.58□□□□□ -2
CD44-239ENST00000639002 SLC3A1Q07837 685 aa2.58□□□□□ -2
CD44-239ENST00000639002 ASAH1Q13510 395 aa2.58□□□□□ -2
CD44-239ENST00000639002 SNRNP48Q6IEG0 339 aaKnown RBP2.58□□□□□ -2
CD44-239ENST00000639002 Q6P435 159 aa2.58□□□□□ -2
CD44-239ENST00000639002 ZCCHC12Q6PEW1 402 aa2.58□□□□□ -2
CD44-239ENST00000639002 AFAP1L1Q8TED9 768 aa2.58□□□□□ -2
CD44-239ENST00000639002 SNRNP27Q8WVK2 155 aaKnown RBP2.58□□□□□ -2
CD44-239ENST00000639002 PRCCQ92733 491 aaPredicted RBP2.58□□□□□ -2
CD44-239ENST00000639002 IDI2Q9BXS1 227 aa2.58□□□□□ -2
CD44-239ENST00000639002 RNF41Q9H4P4 317 aaPredicted RBP2.58□□□□□ -2
CD44-239ENST00000639002 ADGRL4Q9HBW9 690 aa2.58□□□□□ -2
CD44-239ENST00000639002 EIF3KQ9UBQ5 218 aaKnown RBP2.58□□□□□ -2
CD44-239ENST00000639002 PSORS1C1Q9UIG5 152 aa2.58□□□□□ -2
CD44-239ENST00000639002 YDJCA8MPS7 323 aa2.57□□□□□ -2
CD44-239ENST00000639002 ACTL6AO96019 429 aa2.57□□□□□ -2
CD44-239ENST00000639002 HSPB1P04792 205 aaKnown RBP2.57□□□□□ -2
CD44-239ENST00000639002 CCND3P30281 292 aaPredicted RBP2.57□□□□□ -2
CD44-239ENST00000639002 IL2RGP31785 369 aa2.57□□□□□ -2
CD44-239ENST00000639002 KCNJ1P48048 391 aa2.57□□□□□ -2
CD44-239ENST00000639002 MECOMQ03112 1051 aa2.57□□□□□ -2
CD44-239ENST00000639002 SLC10A1Q14973 349 aa2.57□□□□□ -2
CD44-239ENST00000639002 TWISTNBQ3B726 338 aaPredicted RBP2.57□□□□□ -2
CD44-239ENST00000639002 ACER2Q5QJU3 275 aa2.57□□□□□ -2
CD44-239ENST00000639002 SLFN11Q7Z7L1 901 aa2.57□□□□□ -2
CD44-239ENST00000639002 C4orf19Q8IY42 314 aa2.57□□□□□ -2
CD44-239ENST00000639002 SPATA18Q8TC71 538 aa2.57□□□□□ -2
CD44-239ENST00000639002 CAPNS2Q96L46 248 aa2.57□□□□□ -2
CD44-239ENST00000639002 RAB3IPQ96QF0 476 aaPredicted RBP2.57□□□□□ -2
CD44-239ENST00000639002 ZNF184Q99676 751 aaPredicted RBP2.57□□□□□ -2
CD44-239ENST00000639002 NUSAP1Q9BXS6 441 aaKnown RBP2.57□□□□□ -2
CD44-239ENST00000639002 CUEDC2Q9H467 287 aa2.57□□□□□ -2
CD44-239ENST00000639002 Q9HAA7 133 aa2.57□□□□□ -2
CD44-239ENST00000639002 TIGARQ9NQ88 270 aa2.57□□□□□ -2
CD44-239ENST00000639002 PFDN4Q9NQP4 134 aa2.57□□□□□ -2
CD44-239ENST00000639002 SEC14L4Q9UDX3 406 aa2.57□□□□□ -2
CD44-239ENST00000639002 KLHL21Q9UJP4 597 aa2.57□□□□□ -2
CD44-239ENST00000639002 LRRK1Q38SD2 2015 aa2.57□□□□□ -2
CD44-239ENST00000639002 TNRQ92752 1358 aa2.57□□□□□ -2
CD44-239ENST00000639002 A0A087X0K7 114 aa2.56□□□□□ -2
CD44-239ENST00000639002 PINLYPA6NC86 204 aa2.56□□□□□ -2
CD44-239ENST00000639002 SLC15A5A6NIM6 579 aa2.56□□□□□ -2
CD44-239ENST00000639002 NME6O75414 186 aaPredicted RBP2.56□□□□□ -2
CD44-239ENST00000639002 KRTAP5-8O75690 187 aa2.56□□□□□ -2
CD44-239ENST00000639002 GOT2P00505 430 aaKnown RBP2.56□□□□□ -2
CD44-239ENST00000639002 IGLV1-47P01700 117 aa2.56□□□□□ -2
CD44-239ENST00000639002 AKAP17AQ02040 695 aaKnown RBP2.56□□□□□ -2
CD44-239ENST00000639002 GABPAQ06546 454 aa2.56□□□□□ -2
CD44-239ENST00000639002 P2RY14Q15391 338 aa2.56□□□□□ -2
CD44-239ENST00000639002 OR1C1Q15619 314 aa2.56□□□□□ -2
CD44-239ENST00000639002 ENTHD1Q8IYW4 607 aa2.56□□□□□ -2
CD44-239ENST00000639002 ZNF444Q8N0Y2 327 aaPredicted RBP2.56□□□□□ -2
CD44-239ENST00000639002 GOLGA5Q8TBA6 731 aa2.56□□□□□ -2
CD44-239ENST00000639002 ELSPBP1Q96BH3 223 aa2.56□□□□□ -2
CD44-239ENST00000639002 C16orf74Q96GX8 76 aa2.56□□□□□ -2
CD44-239ENST00000639002 IMMP1LQ96LU5 166 aa2.56□□□□□ -2
CD44-239ENST00000639002 OR5M11Q96RB7 305 aa2.56□□□□□ -2
CD44-239ENST00000639002 ACPTQ9BZG2 426 aa2.56□□□□□ -2
CD44-239ENST00000639002 TECRQ9NZ01 308 aaKnown RBP2.56□□□□□ -2
CD44-239ENST00000639002 ANAPC5Q9UJX4 755 aa2.56□□□□□ -2
CD44-239ENST00000639002 SLC30A4O14863 429 aa2.55□□□□□ -2
CD44-239ENST00000639002 NUDT21O43809 227 aaKnown RBP2.55□□□□□ -2
CD44-239ENST00000639002 ASNSP08243 561 aa2.55□□□□□ -2
CD44-239ENST00000639002 TSPY3P0CV98 308 aa2.55□□□□□ -2
CD44-239ENST00000639002 TSPY8P0CW00 308 aa2.55□□□□□ -2
CD44-239ENST00000639002 NR2C1P13056 603 aa2.55□□□□□ -2
CD44-239ENST00000639002 CALML3P27482 149 aa2.55□□□□□ -2
CD44-239ENST00000639002 GTF3C1Q12789 2109 aa2.55□□□□□ -2
CD44-239ENST00000639002 PSG7Q13046 419 aa2.55□□□□□ -2
CD44-239ENST00000639002 QRICH1Q2TAL8 776 aa2.55□□□□□ -2
CD44-239ENST00000639002 OTPQ5XKR4 325 aa2.55□□□□□ -2
CD44-239ENST00000639002 SLC22A10Q63ZE4 541 aa2.55□□□□□ -2
CD44-239ENST00000639002 RHBDD2Q6NTF9 364 aa2.55□□□□□ -2
CD44-239ENST00000639002 CASC4Q6P4E1 433 aa2.55□□□□□ -2
CD44-239ENST00000639002 TIFABQ6ZNK6 161 aa2.55□□□□□ -2
CD44-239ENST00000639002 PCGF5Q86SE9 256 aa2.55□□□□□ -2
CD44-239ENST00000639002 AQP12AQ8IXF9 295 aa2.55□□□□□ -2
CD44-239ENST00000639002 Q8N9L7 120 aa2.55□□□□□ -2
CD44-239ENST00000639002 RELL2Q8NC24 303 aaPredicted RBP2.55□□□□□ -2
CD44-239ENST00000639002 ICA1LQ8NDH6 482 aa2.55□□□□□ -2
CD44-239ENST00000639002 TRPV3Q8NET8 790 aa2.55□□□□□ -2
CD44-239ENST00000639002 KIR2DL4Q99706 377 aa2.55□□□□□ -2
CD44-239ENST00000639002 AGPAT1Q99943 283 aa2.55□□□□□ -2
CD44-239ENST00000639002 LRRC2Q9BYS8 371 aa2.55□□□□□ -2
CD44-239ENST00000639002 ZNF702PQ9H963 129 aa2.55□□□□□ -2
CD44-239ENST00000639002 RAI14Q9P0K7 980 aa2.55□□□□□ -2
CD44-239ENST00000639002 ARHGAP23Q9P227 1491 aa2.55□□□□□ -2
CD44-239ENST00000639002 NFKBIL1Q9UBC1 381 aaPredicted RBP2.55□□□□□ -2
CD44-239ENST00000639002 ZFP37Q9Y6Q3 630 aaPredicted RBP2.55□□□□□ -2
CD44-239ENST00000639002 ARHGEF37A1IGU5 675 aa2.54□□□□□ -2
CD44-239ENST00000639002 TRABD2BA6NFA1 517 aa2.54□□□□□ -2
CD44-239ENST00000639002 K7ERI5 159 aa2.54□□□□□ -2
CD44-239ENST00000639002 CPNE6O95741 557 aa2.54□□□□□ -2
CD44-239ENST00000639002 EPOP01588 193 aa2.54□□□□□ -2
CD44-239ENST00000639002 SNRPCP09234 159 aaKnown RBP2.54□□□□□ -2
CD44-239ENST00000639002 EZRP15311 586 aaKnown RBP2.54□□□□□ -2
CD44-239ENST00000639002 SEL1L2Q5TEA6 688 aa2.54□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms