RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 PPIEQ9UNP9 301 aaKnown RBP3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 TRPV2Q9Y5S1 764 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 GMEB1Q9Y692 573 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 IKBKGQ9Y6K9 419 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 SEC23IPQ9Y6Y8 1000 aaKnown RBP3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 ZNFX1Q9P2E3 1918 aaKnown RBP3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 ZNF646O15015 1829 aaPredicted RBP3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 WDR90Q96KV7 1748 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 NRXN2Q9P2S2 1712 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 OBSCNQ5VST9 7968 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 IGKV6D-21A0A0A0MT36 114 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 A0A0J9YWU9 116 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 A0A1W2PQM1 296 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 GLOD5A6NK44 160 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 TRIM49D1C9J1S8 452 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 KBTBD13C9JR72 458 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 H0YJX3 145 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 I3L4J1 428 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 K7ERI5 159 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 M0QZ24 198 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 DDX39AO00148 427 aaKnown RBP3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 ZNF195O14628 629 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 WDR46O15213 610 aaKnown RBP3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 KCNN4O15554 427 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 ARHGEF9O43307 516 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 SYNCRIPO60506 623 aaKnown RBP3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 RNASEH1O60930 286 aaKnown RBP3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 LRCH4O75427 683 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 IFNB1P01574 187 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 APOEP02649 317 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 ASNSP08243 561 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 KRT3P12035 628 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 MLNP12872 115 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 CCDC130P13994 396 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 PSMA3P25788 255 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 NAMPTP43490 491 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 SLC15A1P46059 708 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 RPL5P46777 297 aaKnown RBP3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 NUMBP49757 651 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 NLRP11P59045 1033 aaKnown RBP3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 BPIFB3P59826 476 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 EIF3EP60228 445 aaKnown RBP3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 MRPS5P82675 430 aaKnown RBP3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 MSLNQ13421 630 aaPredicted RBP3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 NAB1Q13506 487 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 FRG1Q14331 258 aaKnown RBP3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 EFTUD2Q15029 972 aaKnown RBP eCLIP3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 PDK2Q15119 407 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 ADIPOQQ15848 244 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 LRRC23Q53EV4 343 aaPredicted RBP3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 BOLA3Q53S33 107 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 C2CD6Q53TS8 623 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 HSP90AA5PQ58FG0 334 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 KRBOX4Q5JUW0 171 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 OGFRL1Q5TC84 451 aaPredicted RBP3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 C1orf146Q5VVC0 180 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 CES4AQ5XG92 561 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 SPOPLQ6IQ16 392 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 DNAJC24Q6P3W2 148 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 PLBD1Q6P4A8 553 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 C11orf88Q6PI97 169 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 PAPD4Q6PIY7 484 aaKnown RBP3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 UGT2A3Q6UWM9 527 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 IZUMO2Q6UXV1 221 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 METTL23Q86XA0 190 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 TICAM1Q8IUC6 712 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 ARHGAP12Q8IWW6 846 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 ST13P4Q8IZP2 240 aaPredicted RBP3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 FBXW8Q8N3Y1 598 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 DDHD1Q8NEL9 900 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 Q8NFD4 153 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 DTX3LQ8TDB6 740 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 DDI1Q8WTU0 396 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 NAT14Q8WUY8 206 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 DEPDC1BQ8WUY9 529 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 ATP6V0A1Q93050 837 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 CMTM5Q96DZ9 223 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 ABHD8Q96I13 439 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 C1orf74Q96LT6 269 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 WDFY2Q96P53 400 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 RNF157Q96PX1 679 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 THTPAQ9BU02 230 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 TRIM15Q9C019 465 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 C20orf27Q9GZN8 174 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 PORCNQ9H237 461 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 RAD21L1Q9H4I0 556 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 SUDS3Q9H7L9 328 aaPredicted RBP3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 LTB4R2Q9NPC1 389 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 PXMP2Q9NR77 195 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 FBXO6Q9NRD1 293 aaPredicted RBP3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 C2orf42Q9NWW7 574 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 NDE1Q9NXR1 346 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 C6orf203Q9P0P8 240 aaPredicted RBP3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 C5AR2Q9P296 337 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 KIAA1257Q9ULG3 409 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 CCPG1Q9ULG6 757 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 RAB26Q9ULW5 256 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 CCL27Q9Y4X3 112 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 MAD1L1Q9Y6D9 718 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 UBR3Q6ZT12 1888 aa3.64□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms