RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 GAL3ST4Q96RP7 486 aa10.12□□□□□ -0.79
VPS53-207ENST00000570510 SLC39A3Q9BRY0 314 aa10.12□□□□□ -0.79
VPS53-207ENST00000570510 UGT2B28Q9BY64 529 aa10.12□□□□□ -0.79
VPS53-207ENST00000570510 LRTM1Q9HBL6 345 aa10.12□□□□□ -0.79
VPS53-207ENST00000570510 FBXO6Q9NRD1 293 aaPredicted RBP10.12□□□□□ -0.79
VPS53-207ENST00000570510 SDAD1Q9NVU7 687 aaKnown RBP eCLIP10.12□□□□□ -0.79
VPS53-207ENST00000570510 ADAMTS6Q9UKP5 1117 aa10.12□□□□□ -0.79
VPS53-207ENST00000570510 UTP11Q9Y3A2 253 aaKnown RBP10.12□□□□□ -0.79
VPS53-207ENST00000570510 CUBNO60494 3623 aa10.12□□□□□ -0.79
VPS53-207ENST00000570510 EFCAB8A8MWE9 144 aa10.11□□□□□ -0.79
VPS53-207ENST00000570510 CAPN14A8MX76 684 aa10.11□□□□□ -0.79
VPS53-207ENST00000570510 A8MXE2 369 aa10.11□□□□□ -0.79
VPS53-207ENST00000570510 TMCC2O75069 709 aa10.11□□□□□ -0.79
VPS53-207ENST00000570510 H2AFYO75367 372 aaKnown RBP10.11□□□□□ -0.79
VPS53-207ENST00000570510 SMIM10L1P0DMW3 83 aa10.11□□□□□ -0.79
VPS53-207ENST00000570510 IDUAP35475 653 aa10.11□□□□□ -0.79
VPS53-207ENST00000570510 CDK9P50750 372 aaKnown RBP10.11□□□□□ -0.79
VPS53-207ENST00000570510 HNRNPFP52597 415 aaKnown RBP10.11□□□□□ -0.79
VPS53-207ENST00000570510 PLA2G16P53816 162 aa10.11□□□□□ -0.79
VPS53-207ENST00000570510 CRYMQ14894 314 aa10.11□□□□□ -0.79
VPS53-207ENST00000570510 ETFDHQ16134 617 aa10.11□□□□□ -0.79
VPS53-207ENST00000570510 KRTAP24-1Q3LI83 254 aa10.11□□□□□ -0.79
VPS53-207ENST00000570510 GLE1Q53GS7 698 aaKnown RBP10.11□□□□□ -0.79
VPS53-207ENST00000570510 TRIM40Q6P9F5 258 aa10.11□□□□□ -0.79
VPS53-207ENST00000570510 ENPP6Q6UWR7 440 aa10.11□□□□□ -0.79
VPS53-207ENST00000570510 SLC29A4Q7RTT9 530 aa10.11□□□□□ -0.79
VPS53-207ENST00000570510 TMPRSS11BQ86T26 416 aa10.11□□□□□ -0.79
VPS53-207ENST00000570510 KLHDC8AQ8IYD2 350 aa10.11□□□□□ -0.79
VPS53-207ENST00000570510 ANKRD53Q8N9V6 530 aa10.11□□□□□ -0.79
VPS53-207ENST00000570510 C2CD4AQ8NCU7 369 aaPredicted RBP10.11□□□□□ -0.79
VPS53-207ENST00000570510 TMEM52Q8NDY8 209 aa10.11□□□□□ -0.79
VPS53-207ENST00000570510 C7orf57Q8NEG2 295 aa10.11□□□□□ -0.79
VPS53-207ENST00000570510 NUBPLQ8TB37 319 aa10.11□□□□□ -0.79
VPS53-207ENST00000570510 CD200R1Q8TD46 325 aa10.11□□□□□ -0.79
VPS53-207ENST00000570510 EEF1AKMT1Q8WVE0 214 aa10.11□□□□□ -0.79
VPS53-207ENST00000570510 SLC44A1Q8WWI5 657 aa10.11□□□□□ -0.79
VPS53-207ENST00000570510 ANKRD7Q92527 254 aa10.11□□□□□ -0.79
VPS53-207ENST00000570510 NEIL2Q969S2 332 aa10.11□□□□□ -0.79
VPS53-207ENST00000570510 ZNF669Q96BR6 464 aaPredicted RBP10.11□□□□□ -0.79
VPS53-207ENST00000570510 RBM18Q96H35 190 aaKnown RBP10.11□□□□□ -0.79
VPS53-207ENST00000570510 SMIM10Q96HG1 83 aa10.11□□□□□ -0.79
VPS53-207ENST00000570510 ART5Q96L15 291 aa10.11□□□□□ -0.79
VPS53-207ENST00000570510 GNRHR2Q96P88 292 aa10.11□□□□□ -0.79
VPS53-207ENST00000570510 FBXO5Q9UKT4 447 aa10.11□□□□□ -0.79
VPS53-207ENST00000570510 CHCHD2Q9Y6H1 151 aaPredicted RBP10.11□□□□□ -0.79
VPS53-207ENST00000570510 TEX264Q9Y6I9 313 aa10.11□□□□□ -0.79
VPS53-207ENST00000570510 SPACA6W5XKT8 324 aa10.11□□□□□ -0.79
VPS53-207ENST00000570510 EML6Q6ZMW3 1958 aa10.1□□□□□ -0.79
VPS53-207ENST00000570510 UQCRHLA0A096LP55 91 aa10.1□□□□□ -0.79
VPS53-207ENST00000570510 IQANK1A0A1B0GTG1 560 aa10.1□□□□□ -0.79
VPS53-207ENST00000570510 MSTNO14793 375 aa10.1□□□□□ -0.79
VPS53-207ENST00000570510 SIAH2O43255 324 aa10.1□□□□□ -0.79
VPS53-207ENST00000570510 LDB3O75112 727 aa10.1□□□□□ -0.79
VPS53-207ENST00000570510 SNX4O95219 450 aa10.1□□□□□ -0.79
VPS53-207ENST00000570510 GUCA1CO95843 209 aa10.1□□□□□ -0.79
VPS53-207ENST00000570510 ACTL6AO96019 429 aa10.1□□□□□ -0.79
VPS53-207ENST00000570510 HPNP05981 417 aa10.1□□□□□ -0.79
VPS53-207ENST00000570510 POU2F1P14859 743 aa10.1□□□□□ -0.79
VPS53-207ENST00000570510 PAX1P15863 534 aa10.1□□□□□ -0.79
VPS53-207ENST00000570510 CD79BP40259 229 aa10.1□□□□□ -0.79
VPS53-207ENST00000570510 RPP38P78345 283 aaKnown RBP10.1□□□□□ -0.79
VPS53-207ENST00000570510 REEP5Q00765 189 aa10.1□□□□□ -0.79
VPS53-207ENST00000570510 TGM3Q08188 693 aa10.1□□□□□ -0.79
VPS53-207ENST00000570510 DHX9Q08211 1270 aaKnown RBP10.1□□□□□ -0.79
VPS53-207ENST00000570510 KBTBD12Q3ZCT8 623 aa10.1□□□□□ -0.79
VPS53-207ENST00000570510 EIPR1Q53HC9 387 aa10.1□□□□□ -0.79
VPS53-207ENST00000570510 NHSL2Q5HYW2 709 aa10.1□□□□□ -0.79
VPS53-207ENST00000570510 ADGRD1Q6QNK2 874 aa10.1□□□□□ -0.79
VPS53-207ENST00000570510 SYT10Q6XYQ8 523 aa10.1□□□□□ -0.79
VPS53-207ENST00000570510 CHMP1BQ7LBR1 199 aa10.1□□□□□ -0.79
VPS53-207ENST00000570510 P4HA3Q7Z4N8 544 aa10.1□□□□□ -0.79
VPS53-207ENST00000570510 GRAMD2AQ8IUY3 354 aa10.1□□□□□ -0.79
VPS53-207ENST00000570510 KLHL7Q8IXQ5 586 aa10.1□□□□□ -0.79
VPS53-207ENST00000570510 TAGAPQ8N103 731 aa10.1□□□□□ -0.79
VPS53-207ENST00000570510 CNEP1R1Q8N9A8 125 aa10.1□□□□□ -0.79
VPS53-207ENST00000570510 TTLQ8NG68 377 aa10.1□□□□□ -0.79
VPS53-207ENST00000570510 WNT2BQ93097 391 aa10.1□□□□□ -0.79
VPS53-207ENST00000570510 GTPBP3Q969Y2 492 aaKnown RBP10.1□□□□□ -0.79
VPS53-207ENST00000570510 TRIM44Q96DX7 344 aaPredicted RBP10.1□□□□□ -0.79
VPS53-207ENST00000570510 SENP5Q96HI0 755 aaPredicted RBP10.1□□□□□ -0.79
VPS53-207ENST00000570510 RILPQ96NA2 401 aa10.1□□□□□ -0.79
VPS53-207ENST00000570510 QRFPRQ96P65 431 aa10.1□□□□□ -0.79
VPS53-207ENST00000570510 DGAT2Q96PD7 388 aa10.1□□□□□ -0.79
VPS53-207ENST00000570510 HS3ST6Q96QI5 342 aa10.1□□□□□ -0.79
VPS53-207ENST00000570510 PIGQQ9BRB3 760 aa10.1□□□□□ -0.79
VPS53-207ENST00000570510 SPNS1Q9H2V7 528 aa10.1□□□□□ -0.79
VPS53-207ENST00000570510 PELI2Q9HAT8 420 aa10.1□□□□□ -0.79
VPS53-207ENST00000570510 SH2D2AQ9NP31 389 aa10.1□□□□□ -0.79
VPS53-207ENST00000570510 C20orf96Q9NUD7 363 aaPredicted RBP10.1□□□□□ -0.79
VPS53-207ENST00000570510 ZNF701Q9NV72 531 aaPredicted RBP10.1□□□□□ -0.79
VPS53-207ENST00000570510 LAMP3Q9UQV4 416 aa10.1□□□□□ -0.79
VPS53-207ENST00000570510 CLDN16Q9Y5I7 305 aa10.1□□□□□ -0.79
VPS53-207ENST00000570510 KCNE2Q9Y6J6 123 aa10.1□□□□□ -0.79
VPS53-207ENST00000570510 DSCAMO60469 2012 aa10.1□□□□□ -0.79
VPS53-207ENST00000570510 KIAA1549Q9HCM3 1950 aa10.09□□□□□ -0.79
VPS53-207ENST00000570510 ANKDD1BA6NHY2 528 aa10.09□□□□□ -0.79
VPS53-207ENST00000570510 C4orf51C9J302 202 aa10.09□□□□□ -0.79
VPS53-207ENST00000570510 C16orf97H3BN30 126 aa10.09□□□□□ -0.79
VPS53-207ENST00000570510 TRIM3O75382 744 aaPredicted RBP10.09□□□□□ -0.79
VPS53-207ENST00000570510 ETHE1O95571 254 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms