RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 RFC3P40938 356 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 KCNJ5P48544 419 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 EXOC3L2Q2M3D2 409 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 FBXO48Q5FWF7 155 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 EEF1AKMT2Q5JPI9 291 aaKnown RBP9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 ZNF549Q6P9A3 640 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 KRT74Q7RTS7 529 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 PIM3Q86V86 326 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 TRIM69Q86WT6 500 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 FAM131BQ86XD5 332 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 OR4N4Q8N0Y3 316 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 ZNF454Q8N9F8 522 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 DENND6BQ8NEG7 585 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 SH3RF2Q8TEC5 729 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 SETD7Q8WTS6 366 aaKnown RBP9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 CENPIQ92674 756 aaPredicted RBP9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 MS4A3Q96HJ5 214 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 CRB3Q9BUF7 120 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 MTIF3Q9H2K0 278 aaKnown RBP9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 TMPRSS4Q9NRS4 437 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 CHD7Q9P2D1 2997 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 MYEF2Q9P2K5 600 aaKnown RBP9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 ING1Q9UK53 422 aaPredicted RBP9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 MYLKQ15746 1914 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 SHROOM3Q8TF72 1996 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 FAM220BPB1ANY3 271 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 D6RAR5 112 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 SCAMP1O15126 338 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 OR1I1O60431 355 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 WISP3O95389 354 aaPredicted RBP9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 FABP3P05413 133 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 CKMT1AP12532 417 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 PRF1P14222 555 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 MATKP42679 507 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 PIK3CGP48736 1102 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 NDUFV1P49821 464 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 P2RY4P51582 365 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 NUBP1P53384 320 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 CDKN2DP55273 166 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 MAZP56270 477 aaKnown RBP9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 PPP3R1P63098 170 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 TRAM2Q15035 370 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 PAFAH1B3Q15102 231 aaKnown RBP9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 MSANTD2Q6P1R3 559 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 FAM198BQ6UWH4 519 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 ALKAL2Q6UX46 152 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 WASH2PQ6VEQ5 465 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 LIX1Q8N485 282 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 FBXO22Q8NEZ5 403 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 OR2T35Q8NGX2 323 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 AUTS2Q8WXX7 1259 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 NDRG1Q92597 394 aaKnown RBP9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 CLP1Q92989 425 aaKnown RBP9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 OR2M2Q96R28 347 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 BTBD1Q9H0C5 482 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 REEP1Q9H902 201 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 POLE3Q9NRF9 147 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 NUDT15Q9NV35 164 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 TXNL4BQ9NX01 149 aaKnown RBP9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 IMPAD1Q9NX62 359 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 RCOR3Q9P2K3 495 aaPredicted RBP9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 BTNL2Q9UIR0 455 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 CDH23Q9H251 3354 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 IFRD1O00458 451 aaPredicted RBP9.01□□□□□ -0.97
CTNNA1-243ENST00000540387 GLUD1P00367 558 aa9.01□□□□□ -0.97
CTNNA1-243ENST00000540387 KLK3P07288 261 aaPredicted RBP9.01□□□□□ -0.97
CTNNA1-243ENST00000540387 HIST1H2AGP0C0S8 130 aaPredicted RBP9.01□□□□□ -0.97
CTNNA1-243ENST00000540387 SPP1P10451 314 aa9.01□□□□□ -0.97
CTNNA1-243ENST00000540387 HIST1H2ADP20671 130 aa9.01□□□□□ -0.97
CTNNA1-243ENST00000540387 OR1D2P34982 312 aa9.01□□□□□ -0.97
CTNNA1-243ENST00000540387 HSPA7P48741 367 aa9.01□□□□□ -0.97
CTNNA1-243ENST00000540387 TSPAN5P62079 268 aa9.01□□□□□ -0.97
CTNNA1-243ENST00000540387 OR4D1Q15615 310 aa9.01□□□□□ -0.97
CTNNA1-243ENST00000540387 CHRNA6Q15825 494 aa9.01□□□□□ -0.97
CTNNA1-243ENST00000540387 PLAG1Q6DJT9 500 aa9.01□□□□□ -0.97
CTNNA1-243ENST00000540387 HIST2H2AA3Q6FI13 130 aa9.01□□□□□ -0.97
CTNNA1-243ENST00000540387 C22orf42Q6IC83 251 aa9.01□□□□□ -0.97
CTNNA1-243ENST00000540387 USP53Q70EK8 1073 aa9.01□□□□□ -0.97
CTNNA1-243ENST00000540387 KRT78Q8N1N4 520 aa9.01□□□□□ -0.97
CTNNA1-243ENST00000540387 TTC9BQ8N6N2 239 aa9.01□□□□□ -0.97
CTNNA1-243ENST00000540387 PPHLN1Q8NEY8 458 aaKnown RBP9.01□□□□□ -0.97
CTNNA1-243ENST00000540387 GOT1L1Q8NHS2 421 aaPredicted RBP9.01□□□□□ -0.97
CTNNA1-243ENST00000540387 SP7Q8TDD2 431 aaPredicted RBP9.01□□□□□ -0.97
CTNNA1-243ENST00000540387 CLEC4CQ8WTT0 213 aa9.01□□□□□ -0.97
CTNNA1-243ENST00000540387 GTF3AQ92664 365 aaKnown RBP9.01□□□□□ -0.97
CTNNA1-243ENST00000540387 FAM120BQ96EK7 910 aaKnown RBP9.01□□□□□ -0.97
CTNNA1-243ENST00000540387 SMARCD1Q96GM5 515 aa9.01□□□□□ -0.97
CTNNA1-243ENST00000540387 ZDHHC12Q96GR4 267 aa9.01□□□□□ -0.97
CTNNA1-243ENST00000540387 HIST1H2AHQ96KK5 128 aa9.01□□□□□ -0.97
CTNNA1-243ENST00000540387 DMRTA2Q96SC8 542 aa9.01□□□□□ -0.97
CTNNA1-243ENST00000540387 HIST1H2AJQ99878 128 aa9.01□□□□□ -0.97
CTNNA1-243ENST00000540387 TCF25Q9BQ70 676 aa9.01□□□□□ -0.97
CTNNA1-243ENST00000540387 ZDHHC4Q9NPG8 344 aa9.01□□□□□ -0.97
CTNNA1-243ENST00000540387 HEBP1Q9NRV9 189 aa9.01□□□□□ -0.97
CTNNA1-243ENST00000540387 NDUFB11Q9NX14 153 aa9.01□□□□□ -0.97
CTNNA1-243ENST00000540387 MPP6Q9NZW5 540 aa9.01□□□□□ -0.97
CTNNA1-243ENST00000540387 FZD10Q9ULW2 581 aa9.01□□□□□ -0.97
CTNNA1-243ENST00000540387 DUSP12Q9UNI6 340 aa9.01□□□□□ -0.97
CTNNA1-243ENST00000540387 SAMD4AQ9UPU9 718 aaKnown RBP9.01□□□□□ -0.97
CTNNA1-243ENST00000540387 LSM2Q9Y333 95 aaKnown RBP9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms