RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 ITPR1Q14643 2758 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 ZFHX4Q86UP3 3567 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 FAM234BA2RU67 622 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 KIAA1324LA8MWY0 1029 aaPredicted RBP6.97□□□□□ -1.29
CD44-228ENST00000528455 RTCAO00442 366 aaKnown RBP6.97□□□□□ -1.29
CD44-228ENST00000528455 PLD2O14939 933 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 NVLO15381 856 aaKnown RBP6.97□□□□□ -1.29
CD44-228ENST00000528455 CHST10O43529 356 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 RRP9O43818 475 aaKnown RBP6.97□□□□□ -1.29
CD44-228ENST00000528455 SCRG1O75711 98 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 APC2O95996 2303 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 GBAP04062 536 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 KLK3P07288 261 aaPredicted RBP6.97□□□□□ -1.29
CD44-228ENST00000528455 SNRPB2P08579 225 aaKnown RBP6.97□□□□□ -1.29
CD44-228ENST00000528455 CCL4P13236 92 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 DDCP20711 480 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 JAK1P23458 1154 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 TACR1P25103 407 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 PRDX6P30041 224 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 KIR3DL1P43629 444 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 MNAT1P51948 309 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 POLR2JP52435 117 aaKnown RBP6.97□□□□□ -1.29
CD44-228ENST00000528455 CLNS1AP54105 237 aaKnown RBP6.97□□□□□ -1.29
CD44-228ENST00000528455 LIM2P55344 173 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 CLDN6P56747 220 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 TAS2R50P59544 299 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 UFM1P61960 85 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 ZNF763Q0D2J5 394 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 LRRC74AQ0VAA2 488 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 RTP5Q14D33 572 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 MAPRE2Q15555 327 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 DPY19L1Q2PZI1 675 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 FAM71E1Q6IPT2 247 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 PWWP2BQ6NUJ5 590 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 ZNF793Q6ZN11 406 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 TTLL10Q6ZVT0 673 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 CAMKMTQ7Z624 323 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 PDSS2Q86YH6 399 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 TMEM126BQ8IUX1 230 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 FUNDC1Q8IVP5 155 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 SPACA3Q8IXA5 215 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 SAMD14Q8IZD0 417 aaPredicted RBP6.97□□□□□ -1.29
CD44-228ENST00000528455 AMER3Q8N944 861 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 VPS37AQ8NEZ2 397 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 OR8J2Q8NGG1 315 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 OR9A4Q8NGU2 314 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 ADAMTS18Q8TE60 1221 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 MMABQ96EY8 250 aaPredicted RBP6.97□□□□□ -1.29
CD44-228ENST00000528455 NSL1Q96IY1 281 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 EGLN2Q96KS0 407 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 C10orf90Q96M02 699 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 Q96M66 194 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 CATSPER2Q96P56 530 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 SCN2AQ99250 2005 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 C1orf50Q9BV19 199 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 DDA1Q9BW61 102 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 FAIM2Q9BWQ8 316 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 SLC7A5P2Q9GIP4 190 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 NMUR2Q9GZQ4 415 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 ACTL8Q9H568 366 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 REEP4Q9H6H4 257 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 ACTR5Q9H9F9 607 aaPredicted RBP6.97□□□□□ -1.29
CD44-228ENST00000528455 WDR41Q9HAD4 459 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 TXLNGQ9NUQ3 528 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 IRAK4Q9NWZ3 460 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 EHD3Q9NZN3 535 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 CCDC167Q9P0B6 97 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 ATP6V1HQ9UI12 483 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 MRPS2Q9Y399 296 aaKnown RBP6.97□□□□□ -1.29
CD44-228ENST00000528455 ATG4BQ9Y4P1 393 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 POLR3HQ9Y535 204 aaPredicted RBP6.97□□□□□ -1.29
CD44-228ENST00000528455 PCDHGA8Q9Y5G5 932 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 FAM208BQ5VWN6 2430 aa6.97□□□□□ -1.29
CD44-228ENST00000528455 IGLV3-12A0A075B6K2 115 aa6.96□□□□□ -1.3
CD44-228ENST00000528455 A0A0A6YYC8 382 aaPredicted RBP6.96□□□□□ -1.3
CD44-228ENST00000528455 PRSS51A0A1B0GVH4 220 aa6.96□□□□□ -1.3
CD44-228ENST00000528455 A0A1B0GX78 115 aa6.96□□□□□ -1.3
CD44-228ENST00000528455 A0A1W2PP18 115 aa6.96□□□□□ -1.3
CD44-228ENST00000528455 A0A1W2PR48 441 aa6.96□□□□□ -1.3
CD44-228ENST00000528455 C4orf51C9J302 202 aa6.96□□□□□ -1.3
CD44-228ENST00000528455 I3L1I5 382 aaPredicted RBP6.96□□□□□ -1.3
CD44-228ENST00000528455 SGK494L7N484 410 aa6.96□□□□□ -1.3
CD44-228ENST00000528455 CYR61O00622 381 aa6.96□□□□□ -1.3
CD44-228ENST00000528455 CLDN4O14493 209 aa6.96□□□□□ -1.3
CD44-228ENST00000528455 TMPRSS11DO60235 418 aa6.96□□□□□ -1.3
CD44-228ENST00000528455 CTNSO60931 367 aa6.96□□□□□ -1.3
CD44-228ENST00000528455 ATP5HO75947 161 aa6.96□□□□□ -1.3
CD44-228ENST00000528455 NPPAP01160 153 aa6.96□□□□□ -1.3
CD44-228ENST00000528455 STATHP02808 62 aa6.96□□□□□ -1.3
CD44-228ENST00000528455 JMJD7P0C870 316 aa6.96□□□□□ -1.3
CD44-228ENST00000528455 RNH1P13489 461 aaKnown RBP6.96□□□□□ -1.3
CD44-228ENST00000528455 IL1RNP18510 177 aa6.96□□□□□ -1.3
CD44-228ENST00000528455 AGXTP21549 392 aa6.96□□□□□ -1.3
CD44-228ENST00000528455 MPIP34949 423 aa6.96□□□□□ -1.3
CD44-228ENST00000528455 RORAP35398 523 aa6.96□□□□□ -1.3
CD44-228ENST00000528455 BUD31P41223 144 aaPredicted RBP6.96□□□□□ -1.3
CD44-228ENST00000528455 DCDP81605 110 aaKnown RBP6.96□□□□□ -1.3
CD44-228ENST00000528455 KLC1Q07866 573 aa6.96□□□□□ -1.3
CD44-228ENST00000528455 PDE7AQ13946 482 aa6.96□□□□□ -1.3
CD44-228ENST00000528455 CYLC2Q14093 348 aaPredicted RBP6.96□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms