RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 CCDC157Q569K6 752 aa7.91□□□□□ -1.14
USP54-215ENST00000497106 ATG14Q6ZNE5 492 aa7.91□□□□□ -1.14
USP54-215ENST00000497106 PRSS42Q7Z5A4 293 aa7.91□□□□□ -1.14
USP54-215ENST00000497106 P3H2Q8IVL5 708 aa7.91□□□□□ -1.14
USP54-215ENST00000497106 KBTBD2Q8IY47 623 aa7.91□□□□□ -1.14
USP54-215ENST00000497106 FAM81AQ8TBF8 368 aa7.91□□□□□ -1.14
USP54-215ENST00000497106 RHBDD1Q8TEB9 315 aa7.91□□□□□ -1.14
USP54-215ENST00000497106 SORBS1Q9BX66 1292 aaKnown RBP7.91□□□□□ -1.14
USP54-215ENST00000497106 BTBD2Q9BX70 525 aa7.91□□□□□ -1.14
USP54-215ENST00000497106 CHRNA10Q9GZZ6 450 aa7.91□□□□□ -1.14
USP54-215ENST00000497106 TMEM27Q9HBJ8 222 aa7.91□□□□□ -1.14
USP54-215ENST00000497106 IMPAD1Q9NX62 359 aa7.91□□□□□ -1.14
USP54-215ENST00000497106 DAPP1Q9UN19 280 aa7.91□□□□□ -1.14
USP54-215ENST00000497106 SH2B3Q9UQQ2 575 aa7.91□□□□□ -1.14
USP54-215ENST00000497106 PADI2Q9Y2J8 665 aa7.91□□□□□ -1.14
USP54-215ENST00000497106 NUMA1Q14980 2115 aa7.91□□□□□ -1.14
USP54-215ENST00000497106 CASC3O15234 703 aaKnown RBP7.91□□□□□ -1.14
USP54-215ENST00000497106 LCMT2O60294 686 aaKnown RBP7.91□□□□□ -1.14
USP54-215ENST00000497106 RPLP0P05388 317 aaKnown RBP7.91□□□□□ -1.14
USP54-215ENST00000497106 CD247P20963 164 aa7.91□□□□□ -1.14
USP54-215ENST00000497106 NRG3P56975 720 aa7.91□□□□□ -1.14
USP54-215ENST00000497106 LASP1Q14847 261 aaKnown RBP7.91□□□□□ -1.14
USP54-215ENST00000497106 SPNS2Q8IVW8 549 aa7.91□□□□□ -1.14
USP54-215ENST00000497106 C8orf59Q8N0T1 100 aaPredicted RBP7.91□□□□□ -1.14
USP54-215ENST00000497106 AGBL5Q8NDL9 886 aa7.91□□□□□ -1.14
USP54-215ENST00000497106 PATE1Q8WXA2 126 aa7.91□□□□□ -1.14
USP54-215ENST00000497106 CIDECQ96AQ7 238 aaPredicted RBP7.91□□□□□ -1.14
USP54-215ENST00000497106 TEX37Q96LM6 180 aa7.91□□□□□ -1.14
USP54-215ENST00000497106 MAPKAP1Q9BPZ7 522 aa7.91□□□□□ -1.14
USP54-215ENST00000497106 HOXD1Q9GZZ0 328 aa7.91□□□□□ -1.14
USP54-215ENST00000497106 SPNS1Q9H2V7 528 aa7.91□□□□□ -1.14
USP54-215ENST00000497106 A4GALTQ9NPC4 353 aa7.91□□□□□ -1.14
USP54-215ENST00000497106 MKKSQ9NPJ1 570 aaPredicted RBP7.91□□□□□ -1.14
USP54-215ENST00000497106 POLE3Q9NRF9 147 aa7.91□□□□□ -1.14
USP54-215ENST00000497106 DCAF13Q9NV06 445 aaKnown RBP7.91□□□□□ -1.14
USP54-215ENST00000497106 NXT1Q9UKK6 140 aaKnown RBP7.91□□□□□ -1.14
USP54-215ENST00000497106 KLK4Q9Y5K2 254 aa7.91□□□□□ -1.14
USP54-215ENST00000497106 ST14Q9Y5Y6 855 aa7.91□□□□□ -1.14
USP54-215ENST00000497106 ZNF860A6NHJ4 632 aa7.91□□□□□ -1.14
USP54-215ENST00000497106 CHST10O43529 356 aa7.91□□□□□ -1.14
USP54-215ENST00000497106 B4GALT2O60909 372 aa7.91□□□□□ -1.14
USP54-215ENST00000497106 RDH16O75452 317 aa7.91□□□□□ -1.14
USP54-215ENST00000497106 ETHE1O95571 254 aa7.91□□□□□ -1.14
USP54-215ENST00000497106 SLC35E2P0CK97 266 aa7.91□□□□□ -1.14
USP54-215ENST00000497106 LIM2P55344 173 aa7.91□□□□□ -1.14
USP54-215ENST00000497106 HSD17B7P56937 341 aa7.91□□□□□ -1.14
USP54-215ENST00000497106 TAS2R41P59536 307 aa7.91□□□□□ -1.14
USP54-215ENST00000497106 RAE1P78406 368 aaKnown RBP7.91□□□□□ -1.14
USP54-215ENST00000497106 MC1RQ01726 317 aa7.91□□□□□ -1.14
USP54-215ENST00000497106 GAS6Q14393 721 aa7.91□□□□□ -1.14
USP54-215ENST00000497106 DECR1Q16698 335 aa7.91□□□□□ -1.14
USP54-215ENST00000497106 OTUD3Q5T2D3 398 aaPredicted RBP7.91□□□□□ -1.14
USP54-215ENST00000497106 LAIR1Q6GTX8 287 aa7.91□□□□□ -1.14
USP54-215ENST00000497106 TTLL10Q6ZVT0 673 aa7.91□□□□□ -1.14
USP54-215ENST00000497106 USP53Q70EK8 1073 aa7.91□□□□□ -1.14
USP54-215ENST00000497106 TBC1D20Q96BZ9 403 aa7.91□□□□□ -1.14
USP54-215ENST00000497106 AURKBQ96GD4 344 aaPredicted RBP7.91□□□□□ -1.14
USP54-215ENST00000497106 PLEKHA8Q96JA3 519 aa7.91□□□□□ -1.14
USP54-215ENST00000497106 OR1F2PQ96R84 312 aa7.91□□□□□ -1.14
USP54-215ENST00000497106 EBF2Q9HAK2 575 aa7.91□□□□□ -1.14
USP54-215ENST00000497106 PNPLA3Q9NST1 481 aa7.91□□□□□ -1.14
USP54-215ENST00000497106 RNF215Q9Y6U7 377 aa7.91□□□□□ -1.14
USP54-215ENST00000497106 KIAA1549LQ6ZVL6 1849 aa7.9□□□□□ -1.14
USP54-215ENST00000497106 K7ESF4 209 aa7.9□□□□□ -1.14
USP54-215ENST00000497106 M0QX08 132 aa7.9□□□□□ -1.14
USP54-215ENST00000497106 C8orf89P0DMQ9 161 aa7.9□□□□□ -1.14
USP54-215ENST00000497106 BMP2P12643 396 aa7.9□□□□□ -1.14
USP54-215ENST00000497106 ETS2P15036 469 aa7.9□□□□□ -1.14
USP54-215ENST00000497106 RFX3P48380 749 aa7.9□□□□□ -1.14
USP54-215ENST00000497106 OR1D5P58170 312 aa7.9□□□□□ -1.14
USP54-215ENST00000497106 HBA1P69905 142 aa7.9□□□□□ -1.14
USP54-215ENST00000497106 DEFB110Q30KQ9 67 aa7.9□□□□□ -1.14
USP54-215ENST00000497106 LIN52Q52LA3 116 aa7.9□□□□□ -1.14
USP54-215ENST00000497106 TPRG1LQ5T0D9 272 aa7.9□□□□□ -1.14
USP54-215ENST00000497106 WDR74Q6RFH5 385 aaPredicted RBP7.9□□□□□ -1.14
USP54-215ENST00000497106 TSSK4Q6SA08 328 aa7.9□□□□□ -1.14
USP54-215ENST00000497106 TMEM107Q6UX40 140 aa7.9□□□□□ -1.14
USP54-215ENST00000497106 PLEKHM3Q6ZWE6 761 aa7.9□□□□□ -1.14
USP54-215ENST00000497106 ZZZ3Q8IYH5 903 aa7.9□□□□□ -1.14
USP54-215ENST00000497106 DTWD1Q8N5C7 304 aa7.9□□□□□ -1.14
USP54-215ENST00000497106 GIPC3Q8TF64 312 aa7.9□□□□□ -1.14
USP54-215ENST00000497106 SLC38A4Q969I6 547 aa7.9□□□□□ -1.14
USP54-215ENST00000497106 CNBD2Q96M20 576 aa7.9□□□□□ -1.14
USP54-215ENST00000497106 COL21A1Q96P44 957 aa7.9□□□□□ -1.14
USP54-215ENST00000497106 LRRN3Q9H3W5 708 aa7.9□□□□□ -1.14
USP54-215ENST00000497106 ZNF304Q9HCX3 659 aa7.9□□□□□ -1.14
USP54-215ENST00000497106 PRDM6Q9NQX0 595 aa7.9□□□□□ -1.14
USP54-215ENST00000497106 GPR27Q9NS67 375 aa7.9□□□□□ -1.14
USP54-215ENST00000497106 ST6GALNAC1Q9NSC7 600 aaPredicted RBP7.9□□□□□ -1.14
USP54-215ENST00000497106 TEX10Q9NXF1 929 aaPredicted RBP7.9□□□□□ -1.14
USP54-215ENST00000497106 MYLKQ15746 1914 aa7.9□□□□□ -1.14
USP54-215ENST00000497106 DOCK8Q8NF50 2099 aa7.9□□□□□ -1.14
USP54-215ENST00000497106 GLOD5A6NK44 160 aa7.9□□□□□ -1.14
USP54-215ENST00000497106 ACOT8O14734 319 aa7.9□□□□□ -1.14
USP54-215ENST00000497106 CTNSO60931 367 aa7.9□□□□□ -1.14
USP54-215ENST00000497106 CCNB2O95067 398 aa7.9□□□□□ -1.14
USP54-215ENST00000497106 IGHEP01854 428 aa7.9□□□□□ -1.14
USP54-215ENST00000497106 C9P02748 559 aa7.9□□□□□ -1.14
USP54-215ENST00000497106 HEXBP07686 556 aa7.9□□□□□ -1.14
USP54-215ENST00000497106 THRBP10828 461 aa7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms