RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 ZDHHC11BP0C7U3 371 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 UBCP0CG48 685 aaKnown RBP3.98□□□□□ -1.77
BRCA1-220ENST00000492859 TATP17735 454 aaPredicted RBP3.98□□□□□ -1.77
BRCA1-220ENST00000492859 DRD1P21728 446 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 F8A1P23610 371 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 KLRC2P26717 231 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 COL8A1P27658 744 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 C21orf33P30042 268 aaPredicted RBP3.98□□□□□ -1.77
BRCA1-220ENST00000492859 MPLP40238 635 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 AQP2P41181 271 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 MTNR1AP48039 350 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 ART1P52961 327 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 FGF8P55075 233 aaPredicted RBP3.98□□□□□ -1.77
BRCA1-220ENST00000492859 MAGOHP61326 146 aaKnown RBP3.98□□□□□ -1.77
BRCA1-220ENST00000492859 NAA20P61599 178 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 LSM6P62312 80 aaKnown RBP3.98□□□□□ -1.77
BRCA1-220ENST00000492859 ELF3P78545 371 aaPredicted RBP3.98□□□□□ -1.77
BRCA1-220ENST00000492859 MC2RQ01718 297 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 SP3Q02447 781 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 BNIP2Q12982 314 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 IL18R1Q13478 541 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 ARHGEF7Q14155 803 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 MTF1Q14872 753 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 TAF1AQ15573 450 aaPredicted RBP3.98□□□□□ -1.77
BRCA1-220ENST00000492859 VAMP3Q15836 100 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 CPSF6Q16630 551 aaKnown RBP eCLIP3.98□□□□□ -1.77
BRCA1-220ENST00000492859 ATP13A5Q4VNC0 1218 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 SBK1Q52WX2 424 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 C6orf10Q5SRN2 563 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 ZNF562Q6V9R5 426 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 Q6ZPB1 254 aaPredicted RBP3.98□□□□□ -1.77
BRCA1-220ENST00000492859 MRPL21Q7Z2W9 205 aaKnown RBP3.98□□□□□ -1.77
BRCA1-220ENST00000492859 RAB44Q7Z6P3 723 aaPredicted RBP3.98□□□□□ -1.77
BRCA1-220ENST00000492859 TFAP2DQ7Z6R9 452 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 SCD5Q86SK9 330 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 PHF13Q86YI8 300 aaPredicted RBP3.98□□□□□ -1.77
BRCA1-220ENST00000492859 ZNF595Q8IYB9 648 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 FBXO36Q8NEA4 188 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 NUP43Q8NFH3 380 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 OR5B17Q8NGF7 314 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 FNDC8Q8TC99 324 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 CXorf40AQ8TE69 158 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 UBTD2Q8WUN7 234 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 DNAJB3Q8WWF6 145 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 ACOT11Q8WXI4 607 aaPredicted RBP3.98□□□□□ -1.77
BRCA1-220ENST00000492859 ST8SIA1Q92185 356 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 RAD54LQ92698 747 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 EME1Q96AY2 570 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 EXOSC8Q96B26 276 aaKnown RBP3.98□□□□□ -1.77
BRCA1-220ENST00000492859 NXNL1Q96CM4 212 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 WDR89Q96FK6 387 aaPredicted RBP3.98□□□□□ -1.77
BRCA1-220ENST00000492859 COQ2Q96H96 371 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 HRASLS5Q96KN8 279 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 PRAP1Q96NZ9 151 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 SERPINB12Q96P63 405 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 LRRC3BQ96PB8 259 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 LGMNQ99538 433 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 MTERF1Q99551 399 aaKnown RBP3.98□□□□□ -1.77
BRCA1-220ENST00000492859 EBNA1BP2Q99848 306 aaKnown RBP3.98□□□□□ -1.77
BRCA1-220ENST00000492859 HOPXQ9BPY8 73 aaPredicted RBP3.98□□□□□ -1.77
BRCA1-220ENST00000492859 ZNF2Q9BSG1 426 aaPredicted RBP3.98□□□□□ -1.77
BRCA1-220ENST00000492859 FEM1AQ9BSK4 669 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 IFT27Q9BW83 186 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 RBM24Q9BX46 236 aaKnown RBP3.98□□□□□ -1.77
BRCA1-220ENST00000492859 OSBPL1AQ9BXW6 950 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 MS4A7Q9GZW8 240 aaPredicted RBP3.98□□□□□ -1.77
BRCA1-220ENST00000492859 SEMA6CQ9H3T2 930 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 PLEKHA4Q9H4M7 779 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 CCDC134Q9H6E4 229 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 MTHFD2LQ9H903 347 aaPredicted RBP3.98□□□□□ -1.77
BRCA1-220ENST00000492859 SYNPO2LQ9H987 977 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 CPNE5Q9HCH3 593 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 SLAMF7Q9NQ25 335 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 FBXO8Q9NRD0 319 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 DUSP22Q9NRW4 184 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 ABI3Q9P2A4 366 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 PEMTQ9UBM1 199 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 NDRG3Q9UGV2 375 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 ZFP69BQ9UJL9 534 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 ADAM21Q9UKJ8 722 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 GPR132Q9UNW8 380 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 ZFR2Q9UPR6 939 aaKnown RBP3.98□□□□□ -1.77
BRCA1-220ENST00000492859 PPP1R3CQ9UQK1 317 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 FOXA2Q9Y261 457 aaPredicted RBP3.98□□□□□ -1.77
BRCA1-220ENST00000492859 SF3B6Q9Y3B4 125 aaKnown RBP3.98□□□□□ -1.77
BRCA1-220ENST00000492859 CMAHPQ9Y471 501 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 ASB4Q9Y574 426 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 TSSC4Q9Y5U2 329 aaPredicted RBP3.98□□□□□ -1.77
BRCA1-220ENST00000492859 NUBP2Q9Y5Y2 271 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 AUP1Q9Y679 476 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 CHD5Q8TDI0 1954 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 ZNF518AQ6AHZ1 1483 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 MROH7-TTC4A0A0A0MT08 1334 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 PDS5AQ29RF7 1337 aaKnown RBP3.98□□□□□ -1.77
BRCA1-220ENST00000492859 ZNF644Q9H582 1327 aaPredicted RBP3.98□□□□□ -1.77
BRCA1-220ENST00000492859 KIAA0232Q92628 1395 aa3.98□□□□□ -1.77
BRCA1-220ENST00000492859 PQLC2LA1A4F0 135 aa3.97□□□□□ -1.77
BRCA1-220ENST00000492859 C5orf60A6NFR6 353 aa3.97□□□□□ -1.77
BRCA1-220ENST00000492859 A6NIZ1 184 aa3.97□□□□□ -1.77
BRCA1-220ENST00000492859 METTL15A6NJ78 407 aa3.97□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms