RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 CRYABP02511 175 aaKnown RBP16.79■□□□□ 0.28
COL9A3-214ENST00000490398 ENO1P06733 434 aaKnown RBP16.79■□□□□ 0.28
COL9A3-214ENST00000490398 SLC35E2P0CK97 266 aa16.79■□□□□ 0.28
COL9A3-214ENST00000490398 COX7A2P14406 83 aa16.79■□□□□ 0.28
COL9A3-214ENST00000490398 SSTR4P31391 388 aa16.79■□□□□ 0.28
COL9A3-214ENST00000490398 XKP51811 444 aa16.79■□□□□ 0.28
COL9A3-214ENST00000490398 GPR85P60893 370 aa16.79■□□□□ 0.28
COL9A3-214ENST00000490398 BTKQ06187 659 aa16.79■□□□□ 0.28
COL9A3-214ENST00000490398 IFFO1Q0D2I5 559 aa16.79■□□□□ 0.28
COL9A3-214ENST00000490398 ASPHQ12797 758 aa16.79■□□□□ 0.28
COL9A3-214ENST00000490398 SPRED3Q2MJR0 410 aa16.79■□□□□ 0.28
COL9A3-214ENST00000490398 HIST2H2BCQ6DN03 193 aa16.79■□□□□ 0.28
COL9A3-214ENST00000490398 SLC48A1Q6P1K1 146 aa16.79■□□□□ 0.28
COL9A3-214ENST00000490398 GFRALQ6UXV0 394 aa16.79■□□□□ 0.28
COL9A3-214ENST00000490398 SRRM1Q8IYB3 904 aaKnown RBP16.79■□□□□ 0.28
COL9A3-214ENST00000490398 HORMAD2Q8N7B1 307 aa16.79■□□□□ 0.28
COL9A3-214ENST00000490398 SIMC1Q8NDZ2 872 aa16.79■□□□□ 0.28
COL9A3-214ENST00000490398 OR8K3Q8NH51 312 aa16.79■□□□□ 0.28
COL9A3-214ENST00000490398 RDH11Q8TC12 318 aa16.79■□□□□ 0.28
COL9A3-214ENST00000490398 SSC4DQ8WTU2 575 aa16.79■□□□□ 0.28
COL9A3-214ENST00000490398 RIT1Q92963 219 aa16.79■□□□□ 0.28
COL9A3-214ENST00000490398 CCDC126Q96EE4 140 aa16.79■□□□□ 0.28
COL9A3-214ENST00000490398 APOPT1Q96IL0 206 aa16.79■□□□□ 0.28
COL9A3-214ENST00000490398 MECRQ9BV79 373 aa16.79■□□□□ 0.28
COL9A3-214ENST00000490398 CXorf21Q9HAI6 301 aa16.79■□□□□ 0.28
COL9A3-214ENST00000490398 MKS1Q9NXB0 559 aa16.79■□□□□ 0.28
COL9A3-214ENST00000490398 PTGDR2Q9Y5Y4 395 aa16.79■□□□□ 0.28
COL9A3-214ENST00000490398 SVILO95425 2214 aa16.79■□□□□ 0.28
COL9A3-214ENST00000490398 NPIPA5E9PKD4 350 aa16.78■□□□□ 0.28
COL9A3-214ENST00000490398 G3V3Y1 287 aa16.78■□□□□ 0.28
COL9A3-214ENST00000490398 LRRTM2O43300 516 aa16.78■□□□□ 0.28
COL9A3-214ENST00000490398 LDLRP01130 860 aa16.78■□□□□ 0.28
COL9A3-214ENST00000490398 HSD3B1P14060 373 aa16.78■□□□□ 0.28
COL9A3-214ENST00000490398 HSD3B2P26439 372 aa16.78■□□□□ 0.28
COL9A3-214ENST00000490398 FEN1P39748 380 aaKnown RBP16.78■□□□□ 0.28
COL9A3-214ENST00000490398 MEOX1P50221 254 aa16.78■□□□□ 0.28
COL9A3-214ENST00000490398 SLC37A1P57057 533 aa16.78■□□□□ 0.28
COL9A3-214ENST00000490398 HSF1Q00613 529 aa16.78■□□□□ 0.28
COL9A3-214ENST00000490398 MGAT2Q10469 447 aa16.78■□□□□ 0.28
COL9A3-214ENST00000490398 C1QL3Q5VWW1 255 aa16.78■□□□□ 0.28
COL9A3-214ENST00000490398 LIPMQ5VYY2 423 aa16.78■□□□□ 0.28
COL9A3-214ENST00000490398 CLEC6AQ6EIG7 209 aa16.78■□□□□ 0.28
COL9A3-214ENST00000490398 LYPD8Q6UX82 237 aa16.78■□□□□ 0.28
COL9A3-214ENST00000490398 CNPY4Q8N129 248 aa16.78■□□□□ 0.28
COL9A3-214ENST00000490398 RIBC1Q8N443 379 aaPredicted RBP16.78■□□□□ 0.28
COL9A3-214ENST00000490398 MREGQ8N565 214 aa16.78■□□□□ 0.28
COL9A3-214ENST00000490398 OR4K14Q8NGD5 310 aa16.78■□□□□ 0.28
COL9A3-214ENST00000490398 ASB15Q8WXK1 588 aa16.78■□□□□ 0.28
COL9A3-214ENST00000490398 C11orf24Q96F05 449 aaPredicted RBP16.78■□□□□ 0.28
COL9A3-214ENST00000490398 FAM111AQ96PZ2 611 aa16.78■□□□□ 0.28
COL9A3-214ENST00000490398 EBPLQ9BY08 206 aa16.78■□□□□ 0.28
COL9A3-214ENST00000490398 COPS7AQ9UBW8 275 aa16.78■□□□□ 0.28
COL9A3-214ENST00000490398 SEC14L3Q9UDX4 400 aa16.78■□□□□ 0.28
COL9A3-214ENST00000490398 RAB21Q9UL25 225 aa16.78■□□□□ 0.28
COL9A3-214ENST00000490398 NPIPA1Q9UND3 350 aa16.78■□□□□ 0.28
COL9A3-214ENST00000490398 WIPF3A6NGB9 483 aa16.77■□□□□ 0.28
COL9A3-214ENST00000490398 A8MVJ9 347 aa16.77■□□□□ 0.28
COL9A3-214ENST00000490398 CDK2AP1O14519 115 aa16.77■□□□□ 0.28
COL9A3-214ENST00000490398 PEX1O43933 1283 aa16.77■□□□□ 0.28
COL9A3-214ENST00000490398 PCDH7O60245 1069 aa16.77■□□□□ 0.28
COL9A3-214ENST00000490398 IL3P08700 152 aa16.77■□□□□ 0.28
COL9A3-214ENST00000490398 CPMP14384 443 aa16.77■□□□□ 0.28
COL9A3-214ENST00000490398 S1PR1P21453 382 aa16.77■□□□□ 0.28
COL9A3-214ENST00000490398 PIK3R1P27986 724 aa16.77■□□□□ 0.28
COL9A3-214ENST00000490398 ALDH3A1P30838 453 aa16.77■□□□□ 0.28
COL9A3-214ENST00000490398 ALDH6A1Q02252 535 aaKnown RBP16.77■□□□□ 0.28
COL9A3-214ENST00000490398 ZNF844Q08AG5 666 aa16.77■□□□□ 0.28
COL9A3-214ENST00000490398 DUSP8Q13202 625 aa16.77■□□□□ 0.28
COL9A3-214ENST00000490398 BIKQ13323 160 aa16.77■□□□□ 0.28
COL9A3-214ENST00000490398 EBPQ15125 230 aaKnown RBP16.77■□□□□ 0.28
COL9A3-214ENST00000490398 PRSS53Q2L4Q9 553 aa16.77■□□□□ 0.28
COL9A3-214ENST00000490398 PIGGQ5H8A4 983 aa16.77■□□□□ 0.28
COL9A3-214ENST00000490398 CFAP157Q5JU67 520 aa16.77■□□□□ 0.28
COL9A3-214ENST00000490398 FAM111BQ6SJ93 734 aa16.77■□□□□ 0.28
COL9A3-214ENST00000490398 CHERPQ8IWX8 916 aaKnown RBP16.77■□□□□ 0.28
COL9A3-214ENST00000490398 GBP7Q8N8V2 638 aaPredicted RBP16.77■□□□□ 0.28
COL9A3-214ENST00000490398 OR5L2Q8NGL0 311 aa16.77■□□□□ 0.28
COL9A3-214ENST00000490398 TCP10LQ8TDR4 215 aa16.77■□□□□ 0.28
COL9A3-214ENST00000490398 TMEM125Q96AQ2 219 aa16.77■□□□□ 0.28
COL9A3-214ENST00000490398 ZNF681Q96N22 645 aa16.77■□□□□ 0.28
COL9A3-214ENST00000490398 ROPN1BQ9BZX4 212 aaPredicted RBP16.77■□□□□ 0.28
COL9A3-214ENST00000490398 ROPN1Q9HAT0 212 aaPredicted RBP16.77■□□□□ 0.28
COL9A3-214ENST00000490398 HPF1Q9NWY4 346 aa16.77■□□□□ 0.28
COL9A3-214ENST00000490398 MCM8Q9UJA3 840 aa16.77■□□□□ 0.28
COL9A3-214ENST00000490398 ERVK-11Q9UQG0 969 aa16.77■□□□□ 0.28
COL9A3-214ENST00000490398 SLC5A6Q9Y289 635 aa16.77■□□□□ 0.28
COL9A3-214ENST00000490398 STK38LQ9Y2H1 464 aa16.77■□□□□ 0.28
COL9A3-214ENST00000490398 DOPEY1Q5JWR5 2465 aa16.76■□□□□ 0.27
COL9A3-214ENST00000490398 C1orf226A1L170 272 aa16.76■□□□□ 0.27
COL9A3-214ENST00000490398 A1L4Q6 167 aa16.76■□□□□ 0.27
COL9A3-214ENST00000490398 SERTM1A2A2V5 107 aa16.76■□□□□ 0.27
COL9A3-214ENST00000490398 ERAL1O75616 437 aaKnown RBP16.76■□□□□ 0.27
COL9A3-214ENST00000490398 STSP08842 583 aa16.76■□□□□ 0.27
COL9A3-214ENST00000490398 NT5EP21589 574 aa16.76■□□□□ 0.27
COL9A3-214ENST00000490398 ARRB2P32121 409 aa16.76■□□□□ 0.27
COL9A3-214ENST00000490398 ALDH9A1P49189 494 aa16.76■□□□□ 0.27
COL9A3-214ENST00000490398 LTB4RQ15722 352 aa16.76■□□□□ 0.27
COL9A3-214ENST00000490398 TMEM64Q6YI46 380 aa16.76■□□□□ 0.27
COL9A3-214ENST00000490398 RNF111Q6ZNA4 994 aa16.76■□□□□ 0.27
COL9A3-214ENST00000490398 FGD2Q7Z6J4 655 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms