RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 MAGED4Q96JG8 741 aa16.6■□□□□ 0.25
UPF3A-203ENST00000474056 C12orf65Q9H3J6 166 aaKnown RBP16.6■□□□□ 0.25
UPF3A-203ENST00000474056 GSTO2Q9H4Y5 243 aa16.6■□□□□ 0.25
UPF3A-203ENST00000474056 TINAGQ9UJW2 476 aa16.6■□□□□ 0.25
UPF3A-203ENST00000474056 ZNF835Q9Y2P0 537 aa16.6■□□□□ 0.25
UPF3A-203ENST00000474056 A0A0G2JMM0 328 aa16.59■□□□□ 0.25
UPF3A-203ENST00000474056 A0A1W2PPB8 328 aa16.59■□□□□ 0.25
UPF3A-203ENST00000474056 A0A1W2PRS3 328 aa16.59■□□□□ 0.25
UPF3A-203ENST00000474056 KIR3DP1A8MWS1 328 aa16.59■□□□□ 0.25
UPF3A-203ENST00000474056 G3V3Y1 287 aa16.59■□□□□ 0.25
UPF3A-203ENST00000474056 CCL21O00585 134 aa16.59■□□□□ 0.25
UPF3A-203ENST00000474056 TFECO14948 347 aaPredicted RBP16.59■□□□□ 0.25
UPF3A-203ENST00000474056 HS6ST1O60243 411 aa16.59■□□□□ 0.25
UPF3A-203ENST00000474056 NADKO95544 446 aaPredicted RBP16.59■□□□□ 0.25
UPF3A-203ENST00000474056 KRT6AP02538 564 aa16.59■□□□□ 0.25
UPF3A-203ENST00000474056 PROCP04070 461 aa16.59■□□□□ 0.25
UPF3A-203ENST00000474056 KRT6BP04259 564 aa16.59■□□□□ 0.25
UPF3A-203ENST00000474056 CT62P0C5K7 136 aa16.59■□□□□ 0.25
UPF3A-203ENST00000474056 MYL2P10916 166 aa16.59■□□□□ 0.25
UPF3A-203ENST00000474056 HSD3B1P14060 373 aa16.59■□□□□ 0.25
UPF3A-203ENST00000474056 CHN1P15882 459 aa16.59■□□□□ 0.25
UPF3A-203ENST00000474056 HSD3B2P26439 372 aa16.59■□□□□ 0.25
UPF3A-203ENST00000474056 HMOX2P30519 316 aa16.59■□□□□ 0.25
UPF3A-203ENST00000474056 GALNSP34059 522 aa16.59■□□□□ 0.25
UPF3A-203ENST00000474056 PTGER1P34995 402 aa16.59■□□□□ 0.25
UPF3A-203ENST00000474056 KRT6CP48668 564 aa16.59■□□□□ 0.25
UPF3A-203ENST00000474056 SLC37A1P57057 533 aa16.59■□□□□ 0.25
UPF3A-203ENST00000474056 VSNL1P62760 191 aa16.59■□□□□ 0.25
UPF3A-203ENST00000474056 CSTF3Q12996 717 aaKnown RBP16.59■□□□□ 0.25
UPF3A-203ENST00000474056 LCP2Q13094 533 aa16.59■□□□□ 0.25
UPF3A-203ENST00000474056 MPEG1Q2M385 716 aa16.59■□□□□ 0.25
UPF3A-203ENST00000474056 ZNF800Q2TB10 664 aaPredicted RBP eCLIP16.59■□□□□ 0.252e-6■■□□□ 11.5
UPF3A-203ENST00000474056 PIGGQ5H8A4 983 aa16.59■□□□□ 0.25
UPF3A-203ENST00000474056 ZYG11AQ6WRX3 759 aa16.59■□□□□ 0.25
UPF3A-203ENST00000474056 RNF111Q6ZNA4 994 aa16.59■□□□□ 0.25
UPF3A-203ENST00000474056 Q6ZPB1 254 aaPredicted RBP16.59■□□□□ 0.25
UPF3A-203ENST00000474056 SPPL2CQ8IUH8 684 aa16.59■□□□□ 0.25
UPF3A-203ENST00000474056 CHERPQ8IWX8 916 aaKnown RBP16.59■□□□□ 0.25
UPF3A-203ENST00000474056 C1orf52Q8N6N3 182 aaKnown RBP16.59■□□□□ 0.25
UPF3A-203ENST00000474056 CCNYL1Q8N7R7 359 aa16.59■□□□□ 0.25
UPF3A-203ENST00000474056 ZFP62Q8NB50 900 aaPredicted RBP16.59■□□□□ 0.25
UPF3A-203ENST00000474056 OR4K14Q8NGD5 310 aa16.59■□□□□ 0.25
UPF3A-203ENST00000474056 C16orf52Q8NHV5 167 aa16.59■□□□□ 0.25
UPF3A-203ENST00000474056 METTL6Q8TCB7 284 aa16.59■□□□□ 0.25
UPF3A-203ENST00000474056 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP16.59■□□□□ 0.251e-6■■□□□ 11.4
UPF3A-203ENST00000474056 CCDC120Q96HB5 630 aa16.59■□□□□ 0.25
UPF3A-203ENST00000474056 GAL3ST4Q96RP7 486 aa16.59■□□□□ 0.25
UPF3A-203ENST00000474056 KCNA7Q96RP8 456 aa16.59■□□□□ 0.25
UPF3A-203ENST00000474056 PPCSQ9HAB8 311 aa16.59■□□□□ 0.25
UPF3A-203ENST00000474056 VPS29Q9UBQ0 182 aa16.59■□□□□ 0.25
UPF3A-203ENST00000474056 STK38LQ9Y2H1 464 aa16.59■□□□□ 0.25
UPF3A-203ENST00000474056 PCDHA9Q9Y5H5 950 aa16.59■□□□□ 0.25
UPF3A-203ENST00000474056 MAST4O15021 2626 aa16.58■□□□□ 0.25
UPF3A-203ENST00000474056 PLIN3O60664 434 aa16.58■□□□□ 0.24
UPF3A-203ENST00000474056 SSTR4P31391 388 aa16.58■□□□□ 0.24
UPF3A-203ENST00000474056 EBPQ15125 230 aaKnown RBP16.58■□□□□ 0.24
UPF3A-203ENST00000474056 OPN5Q6U736 354 aa16.58■□□□□ 0.24
UPF3A-203ENST00000474056 LYPD8Q6UX82 237 aa16.58■□□□□ 0.24
UPF3A-203ENST00000474056 RTL4Q6ZR62 310 aa16.58■□□□□ 0.24
UPF3A-203ENST00000474056 SLC29A4Q7RTT9 530 aa16.58■□□□□ 0.24
UPF3A-203ENST00000474056 OR2M7Q8NG81 312 aa16.58■□□□□ 0.24
UPF3A-203ENST00000474056 OR52N2Q8NGI0 321 aa16.58■□□□□ 0.24
UPF3A-203ENST00000474056 OR2W6PQ8NHA6 318 aa16.58■□□□□ 0.24
UPF3A-203ENST00000474056 AGAP11Q8TF27 550 aa16.58■□□□□ 0.24
UPF3A-203ENST00000474056 CHTF18Q8WVB6 975 aa16.58■□□□□ 0.24
UPF3A-203ENST00000474056 TM4SF18Q96CE8 201 aa16.58■□□□□ 0.24
UPF3A-203ENST00000474056 ACPTQ9BZG2 426 aa16.58■□□□□ 0.24
UPF3A-203ENST00000474056 CXorf21Q9HAI6 301 aa16.58■□□□□ 0.24
UPF3A-203ENST00000474056 SDAD1Q9NVU7 687 aaKnown RBP eCLIP16.58■□□□□ 0.24
UPF3A-203ENST00000474056 NMRK1Q9NWW6 199 aa16.58■□□□□ 0.24
UPF3A-203ENST00000474056 CES1P1Q9UKY3 287 aa16.58■□□□□ 0.24
UPF3A-203ENST00000474056 TIMM22Q9Y584 194 aa16.58■□□□□ 0.24
UPF3A-203ENST00000474056 C1orf226A1L170 272 aa16.57■□□□□ 0.24
UPF3A-203ENST00000474056 CDH16O75309 829 aa16.57■□□□□ 0.24
UPF3A-203ENST00000474056 ULK1O75385 1050 aa16.57■□□□□ 0.24
UPF3A-203ENST00000474056 ESRRBO95718 433 aa16.57■□□□□ 0.24
UPF3A-203ENST00000474056 ENO1P06733 434 aaKnown RBP16.57■□□□□ 0.24
UPF3A-203ENST00000474056 CCL3P10147 92 aa16.57■□□□□ 0.24
UPF3A-203ENST00000474056 CPMP14384 443 aa16.57■□□□□ 0.24
UPF3A-203ENST00000474056 CRHR1P34998 444 aa16.57■□□□□ 0.24
UPF3A-203ENST00000474056 CCT5P48643 541 aa16.57■□□□□ 0.24
UPF3A-203ENST00000474056 XKP51811 444 aa16.57■□□□□ 0.24
UPF3A-203ENST00000474056 NR0B1P51843 470 aaKnown RBP16.57■□□□□ 0.24
UPF3A-203ENST00000474056 CASP6P55212 293 aa16.57■□□□□ 0.24
UPF3A-203ENST00000474056 FOXA1P55317 472 aa16.57■□□□□ 0.24
UPF3A-203ENST00000474056 PKNOX1P55347 436 aa16.57■□□□□ 0.24
UPF3A-203ENST00000474056 HMGCS1Q01581 520 aa16.57■□□□□ 0.24
UPF3A-203ENST00000474056 CCDC153Q494R4 210 aa16.57■□□□□ 0.24
UPF3A-203ENST00000474056 CMPK2Q5EBM0 449 aa16.57■□□□□ 0.24
UPF3A-203ENST00000474056 SLC48A1Q6P1K1 146 aa16.57■□□□□ 0.24
UPF3A-203ENST00000474056 SCIMPQ6UWF3 145 aa16.57■□□□□ 0.24
UPF3A-203ENST00000474056 FGD2Q7Z6J4 655 aa16.57■□□□□ 0.24
UPF3A-203ENST00000474056 GALNT12Q8IXK2 581 aa16.57■□□□□ 0.24
UPF3A-203ENST00000474056 C4orf33Q8N1A6 199 aa16.57■□□□□ 0.24
UPF3A-203ENST00000474056 GOLM1Q8NBJ4 401 aa16.57■□□□□ 0.24
UPF3A-203ENST00000474056 SLC22A8Q8TCC7 542 aa16.57■□□□□ 0.24
UPF3A-203ENST00000474056 ITLN2Q8WWU7 325 aaPredicted RBP16.57■□□□□ 0.24
UPF3A-203ENST00000474056 WWTR1Q9GZV5 400 aa16.57■□□□□ 0.24
UPF3A-203ENST00000474056 MID1IP1Q9NPA3 183 aa16.57■□□□□ 0.24
UPF3A-203ENST00000474056 SUCOQ9UBS9 1254 aaKnown RBP16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms