RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 UGT1A9O60656 530 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 CDC123O75794 336 aaPredicted RBP6.58□□□□□ -1.36
SCN1A-204ENST00000423058 CH25HO95992 272 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 PRLP01236 227 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 MSL3P1P0C860 447 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 CD79AP11912 226 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 C6P13671 934 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 CD46P15529 392 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 UGT1A6P19224 532 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 AGTR1P30556 359 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 SLC6A8P48029 635 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 PTPRCAPQ14761 206 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 MANEAQ5SRI9 462 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 MAMDC2Q7Z304 686 aaPredicted RBP6.58□□□□□ -1.36
SCN1A-204ENST00000423058 VTCN1Q7Z7D3 282 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 UBQLNLQ8IYU4 475 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 PYROXD2Q8N2H3 581 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 UPRTQ96BW1 309 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 CDK15Q96Q40 435 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 OR52B2Q96RD2 323 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 UGT1A7Q9HAW7 530 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 UGT1A10Q9HAW8 530 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 UGT1A8Q9HAW9 530 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 UNC119BA6NIH7 251 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 CREBL2O60519 120 aaPredicted RBP6.58□□□□□ -1.36
SCN1A-204ENST00000423058 SNCGO76070 127 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 RPS2P15880 293 aaKnown RBP6.58□□□□□ -1.36
SCN1A-204ENST00000423058 NDUFV2P19404 249 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 MSR1P21757 451 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 NTSR1P30989 418 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 HTR3AP46098 478 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 CDK3Q00526 305 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 MPP7Q5T2T1 576 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 CLEC20AQ6ZU45 233 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 HAVCR2Q8TDQ0 301 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 ZDHHC1Q8WTX9 485 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 CPT1BQ92523 772 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 ZNF578Q96N58 590 aaPredicted RBP6.58□□□□□ -1.36
SCN1A-204ENST00000423058 PCTPQ9UKL6 214 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 PRSS51A0A1B0GVH4 220 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 C1orf226A1L170 272 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 LATO43561 262 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 PIAS1O75925 651 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 AKR1C4P17516 323 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 EDNRBP24530 442 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 RAB4BP61018 213 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 EXOC3L2Q2M3D2 409 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 SLC10A6Q3KNW5 377 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 GPRC6AQ5T6X5 926 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 TMEM214Q6NUQ4 689 aaKnown RBP6.58□□□□□ -1.36
SCN1A-204ENST00000423058 GOLGA7Q7Z5G4 137 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 ZNF619Q8N2I2 560 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 SLC2A12Q8TD20 617 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 TSPEARQ8WU66 669 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 OR5P2Q8WZ92 322 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 ENKD1Q9H0I2 346 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 CCSER2Q9H7U1 834 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 PRMT8Q9NR22 394 aaPredicted RBP6.58□□□□□ -1.36
SCN1A-204ENST00000423058 TMEM248Q9NWD8 314 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 ANKRD36CQ5JPF3 1778 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 CCDC163A0A0D9SF12 145 aa6.57□□□□□ -1.36
SCN1A-204ENST00000423058 LCHNA4D1U4 455 aa6.57□□□□□ -1.36
SCN1A-204ENST00000423058 BLACEA4D250 179 aa6.57□□□□□ -1.36
SCN1A-204ENST00000423058 AXIN1O15169 862 aa6.57□□□□□ -1.36
SCN1A-204ENST00000423058 LILRB3O75022 631 aa6.57□□□□□ -1.36
SCN1A-204ENST00000423058 MT-ND1P03886 318 aa6.57□□□□□ -1.36
SCN1A-204ENST00000423058 C8orf89P0DMQ9 161 aa6.57□□□□□ -1.36
SCN1A-204ENST00000423058 ZNF14P17017 642 aaPredicted RBP6.57□□□□□ -1.36
SCN1A-204ENST00000423058 CPT2P23786 658 aa6.57□□□□□ -1.36
SCN1A-204ENST00000423058 STK19P49842 368 aaPredicted RBP6.57□□□□□ -1.36
SCN1A-204ENST00000423058 NIPAL3Q6P499 406 aa6.57□□□□□ -1.36
SCN1A-204ENST00000423058 LRFN4Q6PJG9 635 aa6.57□□□□□ -1.36
SCN1A-204ENST00000423058 PIGWQ7Z7B1 504 aa6.57□□□□□ -1.36
SCN1A-204ENST00000423058 C12orf45Q8N5I9 185 aaPredicted RBP6.57□□□□□ -1.36
SCN1A-204ENST00000423058 PACRGLQ8N7B6 248 aa6.57□□□□□ -1.36
SCN1A-204ENST00000423058 RHBDD1Q8TEB9 315 aa6.57□□□□□ -1.36
SCN1A-204ENST00000423058 AUTS2Q8WXX7 1259 aa6.57□□□□□ -1.36
SCN1A-204ENST00000423058 SPIN2AQ99865 258 aa6.57□□□□□ -1.36
SCN1A-204ENST00000423058 SPIN2BQ9BPZ2 258 aa6.57□□□□□ -1.36
SCN1A-204ENST00000423058 SLC30A2Q9BRI3 323 aa6.57□□□□□ -1.36
SCN1A-204ENST00000423058 NMUR2Q9GZQ4 415 aa6.57□□□□□ -1.36
SCN1A-204ENST00000423058 NUP205Q92621 2012 aa6.57□□□□□ -1.36
SCN1A-204ENST00000423058 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP6.57□□□□□ -1.36
SCN1A-204ENST00000423058 LOC105369274A0A096LPK9 316 aa6.57□□□□□ -1.36
SCN1A-204ENST00000423058 OR6C70A6NIJ9 312 aa6.57□□□□□ -1.36
SCN1A-204ENST00000423058 SSX4O60224 188 aa6.57□□□□□ -1.36
SCN1A-204ENST00000423058 RHOP08100 348 aa6.57□□□□□ -1.36
SCN1A-204ENST00000423058 MAGEA11P43364 429 aa6.57□□□□□ -1.36
SCN1A-204ENST00000423058 THBS3P49746 956 aa6.57□□□□□ -1.36
SCN1A-204ENST00000423058 NKX3-2P78367 333 aa6.57□□□□□ -1.36
SCN1A-204ENST00000423058 DAG1Q14118 895 aa6.57□□□□□ -1.36
SCN1A-204ENST00000423058 ARSHQ5FYA8 562 aa6.57□□□□□ -1.36
SCN1A-204ENST00000423058 PIGGQ5H8A4 983 aa6.57□□□□□ -1.36
SCN1A-204ENST00000423058 FAM180BQ6P0A1 224 aa6.57□□□□□ -1.36
SCN1A-204ENST00000423058 ENPP6Q6UWR7 440 aa6.57□□□□□ -1.36
SCN1A-204ENST00000423058 OR4N4Q8N0Y3 316 aa6.57□□□□□ -1.36
SCN1A-204ENST00000423058 POGLUT1Q8NBL1 392 aa6.57□□□□□ -1.36
SCN1A-204ENST00000423058 SLC37A3Q8NCC5 494 aa6.57□□□□□ -1.36
SCN1A-204ENST00000423058 OR5H2Q8NGV7 314 aa6.57□□□□□ -1.36
SCN1A-204ENST00000423058 ASB12Q8WXK4 309 aa6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms