RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 ANKRD60Q9BZ19 345 aa13.46□□□□□ -0.25
C9orf3-202ENST00000297979 SEMA3GQ9NS98 782 aa13.46□□□□□ -0.25
C9orf3-202ENST00000297979 PSME2Q9UL46 239 aa13.46□□□□□ -0.25
C9orf3-202ENST00000297979 ABCG2Q9UNQ0 655 aa13.46□□□□□ -0.25
C9orf3-202ENST00000297979 PIAS2O75928 621 aa13.45□□□□□ -0.26
C9orf3-202ENST00000297979 PROS1P07225 676 aa13.45□□□□□ -0.26
C9orf3-202ENST00000297979 CPN2P22792 545 aa13.45□□□□□ -0.26
C9orf3-202ENST00000297979 S100A5P33763 92 aa13.45□□□□□ -0.26
C9orf3-202ENST00000297979 ALDH3A2P51648 485 aa13.45□□□□□ -0.26
C9orf3-202ENST00000297979 IST1P53990 364 aa13.45□□□□□ -0.26
C9orf3-202ENST00000297979 GK3PQ14409 553 aa13.45□□□□□ -0.26
C9orf3-202ENST00000297979 SZRD1Q7Z422 152 aa13.45□□□□□ -0.26
C9orf3-202ENST00000297979 OR5K1Q8NHB7 308 aa13.45□□□□□ -0.26
C9orf3-202ENST00000297979 TRAPPC9Q96Q05 1148 aa13.45□□□□□ -0.26
C9orf3-202ENST00000297979 YIPF3Q9GZM5 350 aa13.45□□□□□ -0.26
C9orf3-202ENST00000297979 A4GALTQ9NPC4 353 aa13.45□□□□□ -0.26
C9orf3-202ENST00000297979 ZCCHC3Q9NUD5 404 aaKnown RBP13.45□□□□□ -0.26
C9orf3-202ENST00000297979 KCMF1Q9P0J7 381 aa13.45□□□□□ -0.26
C9orf3-202ENST00000297979 DLGAP2Q9P1A6 1054 aa13.45□□□□□ -0.26
C9orf3-202ENST00000297979 BAG5Q9UL15 447 aa13.45□□□□□ -0.26
C9orf3-202ENST00000297979 NOSIPQ9Y314 301 aaKnown RBP13.45□□□□□ -0.26
C9orf3-202ENST00000297979 ZNF780BQ9Y6R6 833 aa13.45□□□□□ -0.26
C9orf3-202ENST00000297979 SPAG17Q6Q759 2223 aa13.45□□□□□ -0.26
C9orf3-202ENST00000297979 SCN3AQ9NY46 2000 aa13.45□□□□□ -0.26
C9orf3-202ENST00000297979 hCG_2039718K7EN88 272 aa13.45□□□□□ -0.26
C9orf3-202ENST00000297979 IFNA14P01570 189 aa13.45□□□□□ -0.26
C9orf3-202ENST00000297979 C8orf89P0DMQ9 161 aa13.45□□□□□ -0.26
C9orf3-202ENST00000297979 FEN1P39748 380 aaKnown RBP13.45□□□□□ -0.26
C9orf3-202ENST00000297979 LIM2P55344 173 aa13.45□□□□□ -0.26
C9orf3-202ENST00000297979 SELENOWP63302 87 aa13.45□□□□□ -0.26
C9orf3-202ENST00000297979 TUBA1BP68363 451 aa13.45□□□□□ -0.26
C9orf3-202ENST00000297979 VLDLRP98155 873 aa13.45□□□□□ -0.26
C9orf3-202ENST00000297979 DUSP2Q05923 314 aa13.45□□□□□ -0.26
C9orf3-202ENST00000297979 MERTKQ12866 999 aa13.45□□□□□ -0.26
C9orf3-202ENST00000297979 CEBPEQ15744 281 aa13.45□□□□□ -0.26
C9orf3-202ENST00000297979 ZNF750Q32MQ0 723 aa13.45□□□□□ -0.26
C9orf3-202ENST00000297979 TUBA1AQ71U36 451 aa13.45□□□□□ -0.26
C9orf3-202ENST00000297979 C11orf74Q86VG3 221 aa13.45□□□□□ -0.26
C9orf3-202ENST00000297979 CCDC116Q8IYX3 515 aa13.45□□□□□ -0.26
C9orf3-202ENST00000297979 SFXN5Q8TD22 340 aa13.45□□□□□ -0.26
C9orf3-202ENST00000297979 TAMM41Q96BW9 452 aa13.45□□□□□ -0.26
C9orf3-202ENST00000297979 SLC35G5Q96KT7 338 aa13.45□□□□□ -0.26
C9orf3-202ENST00000297979 IL21RQ9HBE5 538 aa13.45□□□□□ -0.26
C9orf3-202ENST00000297979 UCKL1Q9NWZ5 548 aa13.45□□□□□ -0.26
C9orf3-202ENST00000297979 MS4A12Q9NXJ0 267 aa13.45□□□□□ -0.26
C9orf3-202ENST00000297979 DAPP1Q9UN19 280 aa13.45□□□□□ -0.26
C9orf3-202ENST00000297979 MRPS2Q9Y399 296 aaKnown RBP13.45□□□□□ -0.26
C9orf3-202ENST00000297979 KNL1Q8NG31 2342 aa13.45□□□□□ -0.26
C9orf3-202ENST00000297979 TMEM131Q92545 1883 aa13.45□□□□□ -0.26
C9orf3-202ENST00000297979 A0A1W2PRQ8 180 aa13.45□□□□□ -0.26
C9orf3-202ENST00000297979 HPRP00739 348 aa13.45□□□□□ -0.26
C9orf3-202ENST00000297979 OPN1SWP03999 348 aa13.45□□□□□ -0.26
C9orf3-202ENST00000297979 MPIP34949 423 aa13.45□□□□□ -0.26
C9orf3-202ENST00000297979 PCBP3P57721 371 aaKnown RBP13.45□□□□□ -0.26
C9orf3-202ENST00000297979 VSX2P58304 361 aaPredicted RBP13.45□□□□□ -0.26
C9orf3-202ENST00000297979 KCNJ10P78508 379 aa13.45□□□□□ -0.26
C9orf3-202ENST00000297979 RUNX2Q13950 521 aa13.45□□□□□ -0.26
C9orf3-202ENST00000297979 C14orf28Q4W4Y0 310 aa13.45□□□□□ -0.26
C9orf3-202ENST00000297979 CRB2Q5IJ48 1285 aa13.45□□□□□ -0.26
C9orf3-202ENST00000297979 OR2T5Q6IEZ7 315 aa13.45□□□□□ -0.26
C9orf3-202ENST00000297979 REEP3Q6NUK4 255 aa13.45□□□□□ -0.26
C9orf3-202ENST00000297979 OGFOD3Q6PK18 319 aa13.45□□□□□ -0.26
C9orf3-202ENST00000297979 TSSK4Q6SA08 328 aa13.45□□□□□ -0.26
C9orf3-202ENST00000297979 ZBTB8BQ8NAP8 495 aaPredicted RBP13.45□□□□□ -0.26
C9orf3-202ENST00000297979 OR2T29Q8NH02 315 aa13.45□□□□□ -0.26
C9orf3-202ENST00000297979 FAM60AQ9NP50 221 aa13.45□□□□□ -0.26
C9orf3-202ENST00000297979 PCDHGB5Q9Y5G0 923 aa13.45□□□□□ -0.26
C9orf3-202ENST00000297979 MAGED1Q9Y5V3 778 aaPredicted RBP13.45□□□□□ -0.26
C9orf3-202ENST00000297979 TMEM229AB2RXF0 380 aa13.44□□□□□ -0.26
C9orf3-202ENST00000297979 ALPLP05186 524 aa13.44□□□□□ -0.26
C9orf3-202ENST00000297979 HOXA6P31267 233 aa13.44□□□□□ -0.26
C9orf3-202ENST00000297979 TLX1P31314 330 aaPredicted RBP13.44□□□□□ -0.26
C9orf3-202ENST00000297979 DCTP40126 519 aa13.44□□□□□ -0.26
C9orf3-202ENST00000297979 OR52E8Q6IFG1 317 aa13.44□□□□□ -0.26
C9orf3-202ENST00000297979 BHLHB9Q6PI77 547 aa13.44□□□□□ -0.26
C9orf3-202ENST00000297979 PIWIL3Q7Z3Z3 882 aaKnown RBP13.44□□□□□ -0.26
C9orf3-202ENST00000297979 LZICQ8WZA0 190 aa13.44□□□□□ -0.26
C9orf3-202ENST00000297979 MOAP1Q96BY2 351 aa13.44□□□□□ -0.26
C9orf3-202ENST00000297979 C10orf90Q96M02 699 aa13.44□□□□□ -0.26
C9orf3-202ENST00000297979 ZNF681Q96N22 645 aa13.44□□□□□ -0.26
C9orf3-202ENST00000297979 LYRM4Q9HD34 91 aa13.44□□□□□ -0.26
C9orf3-202ENST00000297979 THUMPD1Q9NXG2 353 aaKnown RBP13.44□□□□□ -0.26
C9orf3-202ENST00000297979 CCDC163A0A0D9SF12 145 aa13.44□□□□□ -0.26
C9orf3-202ENST00000297979 A0A1W2PS29 197 aa13.44□□□□□ -0.26
C9orf3-202ENST00000297979 SLC9B1P1A6NJY1 282 aa13.44□□□□□ -0.26
C9orf3-202ENST00000297979 C5orf58C9J3I9 102 aa13.44□□□□□ -0.26
C9orf3-202ENST00000297979 M0QX08 132 aa13.44□□□□□ -0.26
C9orf3-202ENST00000297979 HMGN4O00479 90 aa13.44□□□□□ -0.26
C9orf3-202ENST00000297979 ALPPL2P10696 532 aa13.44□□□□□ -0.26
C9orf3-202ENST00000297979 DEFB110Q30KQ9 67 aa13.44□□□□□ -0.26
C9orf3-202ENST00000297979 SLC36A3Q495N2 470 aa13.44□□□□□ -0.26
C9orf3-202ENST00000297979 ZC3H12BQ5HYM0 836 aaKnown RBP13.44□□□□□ -0.26
C9orf3-202ENST00000297979 PATL1Q86TB9 770 aaKnown RBP13.44□□□□□ -0.26
C9orf3-202ENST00000297979 CSF3RQ99062 836 aa13.44□□□□□ -0.26
C9orf3-202ENST00000297979 SERHL2Q9H4I8 314 aa13.44□□□□□ -0.26
C9orf3-202ENST00000297979 PRDM9Q9NQV7 894 aa13.44□□□□□ -0.26
C9orf3-202ENST00000297979 SLC22A7Q9Y694 548 aa13.44□□□□□ -0.26
C9orf3-202ENST00000297979 A0A1B0GVT2 93 aa13.43□□□□□ -0.26
C9orf3-202ENST00000297979 ZNF860A6NHJ4 632 aa13.43□□□□□ -0.26
C9orf3-202ENST00000297979 BCHEP06276 602 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms