RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 OR2L8Q8NGY9 312 aa18.99■□□□□ 0.63
VPS53-201ENST00000291074 PSD2Q9BQI7 771 aa18.99■□□□□ 0.63
VPS53-201ENST00000291074 SLC17A9Q9BYT1 436 aa18.99■□□□□ 0.63
VPS53-201ENST00000291074 PITHD1Q9GZP4 211 aaPredicted RBP18.99■□□□□ 0.63
VPS53-201ENST00000291074 ZBTB20Q9HC78 741 aaPredicted RBP18.99■□□□□ 0.63
VPS53-201ENST00000291074 ZCCHC3Q9NUD5 404 aaKnown RBP18.99■□□□□ 0.63
VPS53-201ENST00000291074 ADAM29Q9UKF5 820 aa18.99■□□□□ 0.63
VPS53-201ENST00000291074 EYSQ5T1H1 3165 aa18.99■□□□□ 0.63
VPS53-201ENST00000291074 K7EQS6 105 aa18.99■□□□□ 0.63
VPS53-201ENST00000291074 SLC31A1O15431 190 aa18.99■□□□□ 0.63
VPS53-201ENST00000291074 GADD45AP24522 165 aa18.99■□□□□ 0.63
VPS53-201ENST00000291074 FEN1P39748 380 aaKnown RBP18.99■□□□□ 0.63
VPS53-201ENST00000291074 NCBP2P52298 156 aaKnown RBP eCLIP18.99■□□□□ 0.63
VPS53-201ENST00000291074 COL9A2Q14055 689 aaPredicted RBP18.99■□□□□ 0.63
VPS53-201ENST00000291074 STX19Q8N4C7 294 aa18.99■□□□□ 0.63
VPS53-201ENST00000291074 NATD1Q8N6N6 113 aa18.99■□□□□ 0.63
VPS53-201ENST00000291074 TMEM145Q8NBT3 493 aa18.99■□□□□ 0.63
VPS53-201ENST00000291074 B3GNT7Q8NFL0 401 aa18.99■□□□□ 0.63
VPS53-201ENST00000291074 PALMDQ9NP74 551 aa18.99■□□□□ 0.63
VPS53-201ENST00000291074 SLC35C2Q9NQQ7 365 aa18.99■□□□□ 0.63
VPS53-201ENST00000291074 ACSS1Q9NUB1 689 aaPredicted RBP18.99■□□□□ 0.63
VPS53-201ENST00000291074 SEC14L3Q9UDX4 400 aa18.99■□□□□ 0.63
VPS53-201ENST00000291074 ERGIC3Q9Y282 383 aa18.99■□□□□ 0.63
VPS53-201ENST00000291074 SLC17A4Q9Y2C5 497 aa18.99■□□□□ 0.63
VPS53-201ENST00000291074 TICRRQ7Z2Z1 1910 aa18.99■□□□□ 0.63
VPS53-201ENST00000291074 ZAR1LA6NP61 321 aa18.98■□□□□ 0.63
VPS53-201ENST00000291074 PGRMC2O15173 223 aa18.98■□□□□ 0.63
VPS53-201ENST00000291074 RNGTTO60942 597 aaKnown RBP18.98■□□□□ 0.63
VPS53-201ENST00000291074 ADORA3P0DMS8 318 aa18.98■□□□□ 0.63
VPS53-201ENST00000291074 ELAVL4P26378 380 aaKnown RBP18.98■□□□□ 0.63
VPS53-201ENST00000291074 GRK5P34947 590 aa18.98■□□□□ 0.63
VPS53-201ENST00000291074 KIR2DL1P43626 348 aaPredicted RBP18.98■□□□□ 0.63
VPS53-201ENST00000291074 KCNJ5P48544 419 aa18.98■□□□□ 0.63
VPS53-201ENST00000291074 CRISP1P54107 249 aa18.98■□□□□ 0.63
VPS53-201ENST00000291074 ZNF846Q147U1 533 aa18.98■□□□□ 0.63
VPS53-201ENST00000291074 FRMPD2BQ6IN97 320 aa18.98■□□□□ 0.63
VPS53-201ENST00000291074 FGF22Q9HCT0 170 aa18.98■□□□□ 0.63
VPS53-201ENST00000291074 SEMA3GQ9NS98 782 aa18.98■□□□□ 0.63
VPS53-201ENST00000291074 CLDN24A6NM45 220 aa18.98■□□□□ 0.63
VPS53-201ENST00000291074 M0R3H8 397 aa18.98■□□□□ 0.63
VPS53-201ENST00000291074 C8orf89P0DMQ9 161 aa18.98■□□□□ 0.63
VPS53-201ENST00000291074 IMPDH2P12268 514 aa18.98■□□□□ 0.63
VPS53-201ENST00000291074 ZNF12P17014 697 aa18.98■□□□□ 0.63
VPS53-201ENST00000291074 SLAMF1Q13291 335 aa18.98■□□□□ 0.63
VPS53-201ENST00000291074 ZNF675Q8TD23 568 aa18.98■□□□□ 0.63
VPS53-201ENST00000291074 FCGR1BQ92637 280 aa18.98■□□□□ 0.63
VPS53-201ENST00000291074 MS4A6EQ96DS6 147 aa18.98■□□□□ 0.63
VPS53-201ENST00000291074 ZHX1-C8orf76Q96EF9 292 aa18.98■□□□□ 0.63
VPS53-201ENST00000291074 ATG4BQ9Y4P1 393 aa18.98■□□□□ 0.63
VPS53-201ENST00000291074 SULT1C4O75897 302 aa18.97■□□□□ 0.63
VPS53-201ENST00000291074 OCM2P0CE71 109 aa18.97■□□□□ 0.63
VPS53-201ENST00000291074 OCMP0CE72 109 aaPredicted RBP18.97■□□□□ 0.63
VPS53-201ENST00000291074 BMP4P12644 408 aa18.97■□□□□ 0.63
VPS53-201ENST00000291074 CDC42P60953 191 aa18.97■□□□□ 0.63
VPS53-201ENST00000291074 ZIC1Q15915 447 aa18.97■□□□□ 0.63
VPS53-201ENST00000291074 SOWAHCQ53LP3 525 aaPredicted RBP18.97■□□□□ 0.63
VPS53-201ENST00000291074 PSMA8Q8TAA3 256 aa18.97■□□□□ 0.63
VPS53-201ENST00000291074 VMP1Q96GC9 406 aa18.97■□□□□ 0.63
VPS53-201ENST00000291074 COX4I2Q96KJ9 171 aa18.97■□□□□ 0.63
VPS53-201ENST00000291074 ZNF354BQ96LW1 612 aa18.97■□□□□ 0.63
VPS53-201ENST00000291074 MAPKAP1Q9BPZ7 522 aa18.97■□□□□ 0.63
VPS53-201ENST00000291074 ROGDIQ9GZN7 287 aa18.97■□□□□ 0.63
VPS53-201ENST00000291074 SLIRPQ9GZT3 109 aaKnown RBP18.97■□□□□ 0.63
VPS53-201ENST00000291074 HMG20AQ9NP66 347 aa18.97■□□□□ 0.63
VPS53-201ENST00000291074 FBXW2Q9UKT8 454 aa18.97■□□□□ 0.63
VPS53-201ENST00000291074 A0A1W2PR48 441 aa18.97■□□□□ 0.63
VPS53-201ENST00000291074 MAN2B1O00754 1011 aa18.97■□□□□ 0.63
VPS53-201ENST00000291074 AIREO43918 545 aa18.97■□□□□ 0.63
VPS53-201ENST00000291074 OR10H3O60404 316 aa18.97■□□□□ 0.63
VPS53-201ENST00000291074 PDE9AO76083 593 aa18.97■□□□□ 0.63
VPS53-201ENST00000291074 NR2F1P10589 423 aa18.97■□□□□ 0.63
VPS53-201ENST00000291074 TEAD1P28347 426 aa18.97■□□□□ 0.63
VPS53-201ENST00000291074 CLK1P49759 484 aaKnown RBP18.97■□□□□ 0.63
VPS53-201ENST00000291074 RAB8AP61006 207 aa18.97■□□□□ 0.63
VPS53-201ENST00000291074 RPE65Q16518 533 aa18.97■□□□□ 0.63
VPS53-201ENST00000291074 C18orf63Q68DL7 685 aa18.97■□□□□ 0.63
VPS53-201ENST00000291074 PTCHD4Q6ZW05 846 aa18.97■□□□□ 0.63
VPS53-201ENST00000291074 OR2L3Q8NG85 312 aa18.97■□□□□ 0.63
VPS53-201ENST00000291074 BBS4Q96RK4 519 aa18.97■□□□□ 0.63
VPS53-201ENST00000291074 IL4I1Q96RQ9 567 aa18.97■□□□□ 0.63
VPS53-201ENST00000291074 APOOQ9BUR5 198 aa18.97■□□□□ 0.63
VPS53-201ENST00000291074 DZANK1Q9NVP4 752 aa18.97■□□□□ 0.63
VPS53-201ENST00000291074 TAS2R7Q9NYW3 318 aa18.97■□□□□ 0.63
VPS53-201ENST00000291074 P2RX2Q9UBL9 471 aa18.97■□□□□ 0.63
VPS53-201ENST00000291074 TMCC3Q9ULS5 477 aa18.97■□□□□ 0.63
VPS53-201ENST00000291074 ARRDC5A6NEK1 342 aa18.97■□□□□ 0.63
VPS53-201ENST00000291074 PRR19A6NJB7 356 aa18.97■□□□□ 0.63
VPS53-201ENST00000291074 PRICKLE3O43900 615 aaPredicted RBP18.97■□□□□ 0.63
VPS53-201ENST00000291074 TPST2O60704 377 aa18.97■□□□□ 0.63
VPS53-201ENST00000291074 ATP6V1G1O75348 118 aa18.97■□□□□ 0.63
VPS53-201ENST00000291074 EML2O95834 649 aa18.97■□□□□ 0.63
VPS53-201ENST00000291074 CERS1P27544 350 aa18.97■□□□□ 0.63
VPS53-201ENST00000291074 PPP2CBP62714 309 aa18.97■□□□□ 0.63
VPS53-201ENST00000291074 PPP2CAP67775 309 aa18.97■□□□□ 0.63
VPS53-201ENST00000291074 PIN1Q13526 163 aaPredicted RBP18.97■□□□□ 0.63
VPS53-201ENST00000291074 SLC9A5Q14940 896 aa18.97■□□□□ 0.63
VPS53-201ENST00000291074 SHHQ15465 462 aa18.97■□□□□ 0.63
VPS53-201ENST00000291074 UAP1L1Q3KQV9 507 aa18.97■□□□□ 0.63
VPS53-201ENST00000291074 TMEM196Q5HYL7 178 aa18.97■□□□□ 0.63
VPS53-201ENST00000291074 TOR1AIP1Q5JTV8 583 aa18.97■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms