RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 GPR180Q86V85 440 aa15.53■□□□□ 0.08
CLN3-211ENST00000564091 MYRIPQ8NFW9 859 aa15.53■□□□□ 0.08
CLN3-211ENST00000564091 OR10G3Q8NGC4 313 aa15.53■□□□□ 0.08
CLN3-211ENST00000564091 STAG3L4Q8TBR4 150 aa15.53■□□□□ 0.08
CLN3-211ENST00000564091 SLC22A8Q8TCC7 542 aa15.53■□□□□ 0.08
CLN3-211ENST00000564091 SPACA9Q96E40 222 aaPredicted RBP15.53■□□□□ 0.08
CLN3-211ENST00000564091 JSRP1Q96MG2 331 aaPredicted RBP15.53■□□□□ 0.08
CLN3-211ENST00000564091 GAL3ST4Q96RP7 486 aa15.53■□□□□ 0.08
CLN3-211ENST00000564091 SLC6A15Q9H2J7 730 aa15.53■□□□□ 0.08
CLN3-211ENST00000564091 DPH5Q9H2P9 285 aa15.53■□□□□ 0.08
CLN3-211ENST00000564091 ZNF703Q9H7S9 590 aaPredicted RBP15.53■□□□□ 0.08
CLN3-211ENST00000564091 SLC24A3Q9HC58 644 aa15.53■□□□□ 0.08
CLN3-211ENST00000564091 NUDT4Q9NZJ9 180 aa15.53■□□□□ 0.08
CLN3-211ENST00000564091 LRRC3CA6NJW4 275 aa15.52■□□□□ 0.08
CLN3-211ENST00000564091 FAM159BA6NKW6 160 aa15.52■□□□□ 0.08
CLN3-211ENST00000564091 SUPT3HB4E1H0 165 aa15.52■□□□□ 0.08
CLN3-211ENST00000564091 K7EPI3 171 aa15.52■□□□□ 0.08
CLN3-211ENST00000564091 DYRK3O43781 588 aa15.52■□□□□ 0.08
CLN3-211ENST00000564091 SUPT3HO75486 399 aa15.52■□□□□ 0.08
CLN3-211ENST00000564091 CTAG2O75638 210 aa15.52■□□□□ 0.08
CLN3-211ENST00000564091 C1QAP02745 245 aa15.52■□□□□ 0.08
CLN3-211ENST00000564091 ALOX15P16050 662 aaPredicted RBP15.52■□□□□ 0.08
CLN3-211ENST00000564091 TRPC1P48995 793 aa15.52■□□□□ 0.08
CLN3-211ENST00000564091 RAP1GDS1P52306 607 aa15.52■□□□□ 0.08
CLN3-211ENST00000564091 HNRNPH2P55795 449 aaKnown RBP15.52■□□□□ 0.08
CLN3-211ENST00000564091 HERVK_113P63132 956 aa15.52■□□□□ 0.08
CLN3-211ENST00000564091 ERVK-8P63133 956 aa15.52■□□□□ 0.08
CLN3-211ENST00000564091 PLIN5Q00G26 463 aa15.52■□□□□ 0.08
CLN3-211ENST00000564091 ZNF267Q14586 743 aaPredicted RBP15.52■□□□□ 0.08
CLN3-211ENST00000564091 SEM1Q6ZVN7 128 aa15.52■□□□□ 0.08
CLN3-211ENST00000564091 RAPH1Q70E73 1250 aa15.52■□□□□ 0.08
CLN3-211ENST00000564091 CTAGE3PQ8IX95 158 aa15.52■□□□□ 0.08
CLN3-211ENST00000564091 FAM13CQ8NE31 585 aa15.52■□□□□ 0.08
CLN3-211ENST00000564091 HUS1BQ8NHY5 278 aa15.52■□□□□ 0.08
CLN3-211ENST00000564091 TANKQ92844 425 aa15.52■□□□□ 0.08
CLN3-211ENST00000564091 FBXL20Q96IG2 436 aa15.52■□□□□ 0.08
CLN3-211ENST00000564091 ERVK-6Q9BXR3 956 aa15.52■□□□□ 0.08
CLN3-211ENST00000564091 LIME1Q9H400 295 aa15.52■□□□□ 0.08
CLN3-211ENST00000564091 CCM2LQ9NUG4 571 aaPredicted RBP15.52■□□□□ 0.08
CLN3-211ENST00000564091 OPTCQ9UBM4 332 aa15.52■□□□□ 0.08
CLN3-211ENST00000564091 BOKQ9UMX3 212 aaPredicted RBP15.52■□□□□ 0.08
CLN3-211ENST00000564091 ERVK-19Q9WJR5 959 aa15.52■□□□□ 0.08
CLN3-211ENST00000564091 PRRC2AP48634 2157 aaKnown RBP15.51■□□□□ 0.07
CLN3-211ENST00000564091 IQANK1A0A1B0GTG1 560 aa15.51■□□□□ 0.07
CLN3-211ENST00000564091 PLPP1O14494 284 aa15.51■□□□□ 0.07
CLN3-211ENST00000564091 SLC35E2BP0CK96 405 aa15.51■□□□□ 0.07
CLN3-211ENST00000564091 GABRA1P14867 456 aa15.51■□□□□ 0.07
CLN3-211ENST00000564091 SERPINB1P30740 379 aa15.51■□□□□ 0.07
CLN3-211ENST00000564091 PAFAH1B1P43034 410 aa15.51■□□□□ 0.07
CLN3-211ENST00000564091 KIR2DL3P43628 341 aa15.51■□□□□ 0.07
CLN3-211ENST00000564091 GPX6P59796 221 aa15.51■□□□□ 0.07
CLN3-211ENST00000564091 TNFRSF17Q02223 184 aa15.51■□□□□ 0.07
CLN3-211ENST00000564091 RIPPLY2Q5TAB7 128 aa15.51■□□□□ 0.07
CLN3-211ENST00000564091 GRHL2Q6ISB3 625 aa15.51■□□□□ 0.07
CLN3-211ENST00000564091 TMEM64Q6YI46 380 aa15.51■□□□□ 0.07
CLN3-211ENST00000564091 MYLK4Q86YV6 388 aaPredicted RBP15.51■□□□□ 0.07
CLN3-211ENST00000564091 ULK2Q8IYT8 1036 aa15.51■□□□□ 0.07
CLN3-211ENST00000564091 LRRC25Q8N386 305 aaPredicted RBP15.51■□□□□ 0.07
CLN3-211ENST00000564091 FBXW8Q8N3Y1 598 aa15.51■□□□□ 0.07
CLN3-211ENST00000564091 SLC15A4Q8N697 577 aa15.51■□□□□ 0.07
CLN3-211ENST00000564091 TEX9Q8N6V9 391 aa15.51■□□□□ 0.07
CLN3-211ENST00000564091 PPM1NQ8N819 430 aa15.51■□□□□ 0.07
CLN3-211ENST00000564091 C7orf57Q8NEG2 295 aa15.51■□□□□ 0.07
CLN3-211ENST00000564091 RGMAQ96B86 450 aa15.51■□□□□ 0.07
CLN3-211ENST00000564091 ART5Q96L15 291 aa15.51■□□□□ 0.07
CLN3-211ENST00000564091 ATOH8Q96SQ7 321 aa15.51■□□□□ 0.07
CLN3-211ENST00000564091 MTERF1Q99551 399 aaKnown RBP15.51■□□□□ 0.07
CLN3-211ENST00000564091 NAPGQ99747 312 aaPredicted RBP15.51■□□□□ 0.07
CLN3-211ENST00000564091 TMUB1Q9BVT8 246 aa15.51■□□□□ 0.07
CLN3-211ENST00000564091 POLDIP3Q9BY77 421 aaKnown RBP15.51■□□□□ 0.07
CLN3-211ENST00000564091 IGSF5Q9NSI5 407 aa15.51■□□□□ 0.07
CLN3-211ENST00000564091 MS4A12Q9NXJ0 267 aa15.51■□□□□ 0.07
CLN3-211ENST00000564091 CNOT11Q9UKZ1 510 aaKnown RBP15.51■□□□□ 0.07
CLN3-211ENST00000564091 CHCHD2Q9Y6H1 151 aaPredicted RBP15.51■□□□□ 0.07
CLN3-211ENST00000564091 DNHD1Q96M86 4753 aa15.5■□□□□ 0.07
CLN3-211ENST00000564091 VPS13CQ709C8 3753 aa15.5■□□□□ 0.07
CLN3-211ENST00000564091 GLOD5A6NK44 160 aa15.5■□□□□ 0.07
CLN3-211ENST00000564091 KDM4EB2RXH2 506 aaPredicted RBP15.5■□□□□ 0.07
CLN3-211ENST00000564091 FAM47E-STBD1D6RA91 191 aa15.5■□□□□ 0.07
CLN3-211ENST00000564091 PROM1O43490 865 aa15.5■□□□□ 0.07
CLN3-211ENST00000564091 OR10H2O60403 315 aa15.5■□□□□ 0.07
CLN3-211ENST00000564091 KERAO60938 352 aa15.5■□□□□ 0.07
CLN3-211ENST00000564091 EEDO75530 441 aaKnown RBP15.5■□□□□ 0.07
CLN3-211ENST00000564091 FBXO45P0C2W1 286 aa15.5■□□□□ 0.07
CLN3-211ENST00000564091 CD99P14209 185 aa15.5■□□□□ 0.07
CLN3-211ENST00000564091 SERPINB3P29508 390 aa15.5■□□□□ 0.07
CLN3-211ENST00000564091 TLX1P31314 330 aaPredicted RBP15.5■□□□□ 0.07
CLN3-211ENST00000564091 UQCRC1P31930 480 aa15.5■□□□□ 0.07
CLN3-211ENST00000564091 SPRP35270 261 aaPredicted RBP15.5■□□□□ 0.07
CLN3-211ENST00000564091 WNT3P56703 355 aa15.5■□□□□ 0.07
CLN3-211ENST00000564091 RPS13P62277 151 aaKnown RBP15.5■□□□□ 0.07
CLN3-211ENST00000564091 PCDH1Q08174 1060 aa15.5■□□□□ 0.07
CLN3-211ENST00000564091 CALCOCO2Q13137 446 aa15.5■□□□□ 0.07
CLN3-211ENST00000564091 BIKQ13323 160 aa15.5■□□□□ 0.07
CLN3-211ENST00000564091 SLMAPQ14BN4 828 aa15.5■□□□□ 0.07
CLN3-211ENST00000564091 GRTP1Q5TC63 336 aa15.5■□□□□ 0.07
CLN3-211ENST00000564091 CYS1Q717R9 158 aa15.5■□□□□ 0.07
CLN3-211ENST00000564091 SLC29A4Q7RTT9 530 aa15.5■□□□□ 0.07
CLN3-211ENST00000564091 ST13P4Q8IZP2 240 aaPredicted RBP15.5■□□□□ 0.07
CLN3-211ENST00000564091 ZCCHC7Q8N3Z6 543 aaKnown RBP15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms