RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 SERTAD2Q14140 314 aa17.55■□□□□ 0.4
VPS35-202ENST00000561713 OR4C11Q6IEV9 310 aa17.55■□□□□ 0.4
VPS35-202ENST00000561713 RTL4Q6ZR62 310 aa17.55■□□□□ 0.4
VPS35-202ENST00000561713 CHSY3Q70JA7 882 aa17.55■□□□□ 0.4
VPS35-202ENST00000561713 ZNF572Q7Z3I7 529 aaPredicted RBP17.55■□□□□ 0.4
VPS35-202ENST00000561713 GOLGA7Q7Z5G4 137 aa17.55■□□□□ 0.4
VPS35-202ENST00000561713 GPALPP1Q8IXQ4 340 aa17.55■□□□□ 0.4
VPS35-202ENST00000561713 DGAT2Q96PD7 388 aa17.55■□□□□ 0.4
VPS35-202ENST00000561713 CNPPD1Q9BV87 410 aa17.55■□□□□ 0.4
VPS35-202ENST00000561713 ZNF717Q9BY31 904 aaPredicted RBP17.55■□□□□ 0.4
VPS35-202ENST00000561713 ZNF358Q9NW07 568 aa17.55■□□□□ 0.4
VPS35-202ENST00000561713 NINJ2Q9NZG7 142 aa17.55■□□□□ 0.4
VPS35-202ENST00000561713 COPS7AQ9UBW8 275 aa17.55■□□□□ 0.4
VPS35-202ENST00000561713 KCNN3Q9UGI6 736 aa17.55■□□□□ 0.4
VPS35-202ENST00000561713 NAV3Q8IVL0 2385 aa17.54■□□□□ 0.4
VPS35-202ENST00000561713 A0A096LPK6 155 aa17.54■□□□□ 0.4
VPS35-202ENST00000561713 NPIPA2E9PIF3 369 aa17.54■□□□□ 0.4
VPS35-202ENST00000561713 NPIPA3F8WFD2 350 aa17.54■□□□□ 0.4
VPS35-202ENST00000561713 ACOT7O00154 380 aa17.54■□□□□ 0.4
VPS35-202ENST00000561713 TMPRSS11DO60235 418 aa17.54■□□□□ 0.4
VPS35-202ENST00000561713 ALDOAP04075 364 aaKnown RBP17.54■□□□□ 0.4
VPS35-202ENST00000561713 HOXB4P17483 251 aaPredicted RBP17.54■□□□□ 0.4
VPS35-202ENST00000561713 MAGEA5P43359 124 aa17.54■□□□□ 0.4
VPS35-202ENST00000561713 STT3AP46977 705 aa17.54■□□□□ 0.4
VPS35-202ENST00000561713 IGLV3-21P80748 117 aaPredicted RBP17.54■□□□□ 0.4
VPS35-202ENST00000561713 MYBPHQ13203 477 aa17.54■□□□□ 0.4
VPS35-202ENST00000561713 CPSF6Q16630 551 aaKnown RBP eCLIP17.54■□□□□ 0.4
VPS35-202ENST00000561713 FAM83EQ2M2I3 478 aa17.54■□□□□ 0.4
VPS35-202ENST00000561713 DEPDC1Q5TB30 811 aa17.54■□□□□ 0.4
VPS35-202ENST00000561713 CES4AQ5XG92 561 aa17.54■□□□□ 0.4
VPS35-202ENST00000561713 PLD6Q8N2A8 252 aaKnown RBP17.54■□□□□ 0.4
VPS35-202ENST00000561713 OR5M9Q8NGP3 310 aa17.54■□□□□ 0.4
VPS35-202ENST00000561713 UCN3Q969E3 161 aa17.54■□□□□ 0.4
VPS35-202ENST00000561713 CDK15Q96Q40 435 aa17.54■□□□□ 0.4
VPS35-202ENST00000561713 GAL3ST4Q96RP7 486 aa17.54■□□□□ 0.4
VPS35-202ENST00000561713 LRRC1Q9BTT6 524 aa17.54■□□□□ 0.4
VPS35-202ENST00000561713 VPS11Q9H270 941 aa17.54■□□□□ 0.4
VPS35-202ENST00000561713 RPF2Q9H7B2 306 aaKnown RBP17.54■□□□□ 0.4
VPS35-202ENST00000561713 SEMA4BQ9NPR2 832 aaPredicted RBP17.54■□□□□ 0.4
VPS35-202ENST00000561713 RNF11Q9Y3C5 154 aa17.54■□□□□ 0.4
VPS35-202ENST00000561713 A0A1W2PS29 197 aa17.53■□□□□ 0.4
VPS35-202ENST00000561713 SYCE1LA8MT33 242 aa17.53■□□□□ 0.4
VPS35-202ENST00000561713 GBAP04062 536 aa17.53■□□□□ 0.4
VPS35-202ENST00000561713 COX7A2P14406 83 aa17.53■□□□□ 0.4
VPS35-202ENST00000561713 SERPINB1P30740 379 aa17.53■□□□□ 0.4
VPS35-202ENST00000561713 ARL1P40616 181 aaPredicted RBP17.53■□□□□ 0.4
VPS35-202ENST00000561713 SERPINB8P50452 374 aa17.53■□□□□ 0.4
VPS35-202ENST00000561713 NEK2P51955 445 aa17.53■□□□□ 0.4
VPS35-202ENST00000561713 HERVK_113P63132 956 aa17.53■□□□□ 0.4
VPS35-202ENST00000561713 ERVK-8P63133 956 aa17.53■□□□□ 0.4
VPS35-202ENST00000561713 PLIN5Q00G26 463 aa17.53■□□□□ 0.4
VPS35-202ENST00000561713 GTF2H2Q13888 395 aa17.53■□□□□ 0.4
VPS35-202ENST00000561713 TECRLQ5HYJ1 363 aa17.53■□□□□ 0.4
VPS35-202ENST00000561713 PRAMEF20Q5VT98 475 aa17.53■□□□□ 0.4
VPS35-202ENST00000561713 GTF2H2CQ6P1K8 395 aa17.53■□□□□ 0.4
VPS35-202ENST00000561713 GK5Q6ZS86 529 aa17.53■□□□□ 0.4
VPS35-202ENST00000561713 FAM47EQ6ZV65 393 aa17.53■□□□□ 0.4
VPS35-202ENST00000561713 TMEM251Q8N6I4 163 aa17.53■□□□□ 0.4
VPS35-202ENST00000561713 PTGR2Q8N8N7 351 aaPredicted RBP17.53■□□□□ 0.4
VPS35-202ENST00000561713 RHEBL1Q8TAI7 183 aa17.53■□□□□ 0.4
VPS35-202ENST00000561713 RGMAQ96B86 450 aa17.53■□□□□ 0.4
VPS35-202ENST00000561713 C16orf45Q96MC5 204 aaPredicted RBP17.53■□□□□ 0.4
VPS35-202ENST00000561713 GPR78Q96P69 363 aa17.53■□□□□ 0.4
VPS35-202ENST00000561713 ERVK-6Q9BXR3 956 aa17.53■□□□□ 0.4
VPS35-202ENST00000561713 ZDHHC11Q9H8X9 412 aa17.53■□□□□ 0.4
VPS35-202ENST00000561713 PNPLA3Q9NST1 481 aa17.53■□□□□ 0.4
VPS35-202ENST00000561713 TUBA8Q9NY65 449 aaPredicted RBP17.53■□□□□ 0.4
VPS35-202ENST00000561713 ERVK-19Q9WJR5 959 aa17.53■□□□□ 0.4
VPS35-202ENST00000561713 PRRC2AP48634 2157 aaKnown RBP17.53■□□□□ 0.4
VPS35-202ENST00000561713 ANKHD1Q8IWZ3 2542 aaKnown RBP17.53■□□□□ 0.4
VPS35-202ENST00000561713 SYNDIG1LA6NDD5 238 aa17.52■□□□□ 0.4
VPS35-202ENST00000561713 GLSO94925 669 aaPredicted RBP17.52■□□□□ 0.4
VPS35-202ENST00000561713 ZWINTO95229 277 aa17.52■□□□□ 0.4
VPS35-202ENST00000561713 ACSL3O95573 720 aa17.52■□□□□ 0.4
VPS35-202ENST00000561713 AIFM1O95831 613 aa17.52■□□□□ 0.4
VPS35-202ENST00000561713 IGKV3-11P04433 115 aa17.52■□□□□ 0.4
VPS35-202ENST00000561713 NR2F6P10588 404 aa17.52■□□□□ 0.4
VPS35-202ENST00000561713 PIGAP37287 484 aa17.52■□□□□ 0.4
VPS35-202ENST00000561713 ALDH18A1P54886 795 aaKnown RBP17.52■□□□□ 0.4
VPS35-202ENST00000561713 CKAP4Q07065 602 aaKnown RBP17.52■□□□□ 0.4
VPS35-202ENST00000561713 PCDH1Q08174 1060 aa17.52■□□□□ 0.4
VPS35-202ENST00000561713 GXYLT1Q4G148 440 aa17.52■□□□□ 0.4
VPS35-202ENST00000561713 ACAD11Q709F0 780 aa17.52■□□□□ 0.4
VPS35-202ENST00000561713 GPR180Q86V85 440 aa17.52■□□□□ 0.4
VPS35-202ENST00000561713 OR52B6Q8NGF0 335 aa17.52■□□□□ 0.4
VPS35-202ENST00000561713 OR5M3Q8NGP4 307 aa17.52■□□□□ 0.4
VPS35-202ENST00000561713 OR8K3Q8NH51 312 aa17.52■□□□□ 0.4
VPS35-202ENST00000561713 SENP5Q96HI0 755 aaPredicted RBP17.52■□□□□ 0.4
VPS35-202ENST00000561713 SMC6Q96SB8 1091 aa17.52■□□□□ 0.4
VPS35-202ENST00000561713 PHF11Q9UIL8 331 aa17.52■□□□□ 0.4
VPS35-202ENST00000561713 MED12Q93074 2177 aa17.52■□□□□ 0.39
VPS35-202ENST00000561713 ACANP16112 2415 aa17.51■□□□□ 0.39
VPS35-202ENST00000561713 HRNRQ86YZ3 2850 aaPredicted RBP17.51■□□□□ 0.39
VPS35-202ENST00000561713 A0A0A6YYD5 115 aa17.51■□□□□ 0.39
VPS35-202ENST00000561713 ATP6AP2A0A1C7CYW4 349 aa17.51■□□□□ 0.39
VPS35-202ENST00000561713 KLK8O60259 260 aa17.51■□□□□ 0.39
VPS35-202ENST00000561713 ATP6AP2O75787 350 aa17.51■□□□□ 0.39
VPS35-202ENST00000561713 KLHL2O95198 593 aa17.51■□□□□ 0.39
VPS35-202ENST00000561713 ALOX15P16050 662 aaPredicted RBP17.51■□□□□ 0.39
VPS35-202ENST00000561713 TYK2P29597 1187 aa17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms