RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 ARMC6Q6NXE6 501 aa19.54■□□□□ 0.72
VPS28-209ENST00000528142 ABHD13Q7L211 337 aa19.54■□□□□ 0.72
VPS28-209ENST00000528142 PATL1Q86TB9 770 aaKnown RBP19.54■□□□□ 0.72
VPS28-209ENST00000528142 APLFQ8IW19 511 aaPredicted RBP19.54■□□□□ 0.72
VPS28-209ENST00000528142 BARD1Q99728 777 aaKnown RBP19.54■□□□□ 0.72
VPS28-209ENST00000528142 SEMA3GQ9NS98 782 aa19.54■□□□□ 0.72
VPS28-209ENST00000528142 ZCCHC3Q9NUD5 404 aaKnown RBP19.54■□□□□ 0.72
VPS28-209ENST00000528142 PHF11Q9UIL8 331 aa19.54■□□□□ 0.72
VPS28-209ENST00000528142 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa19.53■□□□□ 0.72
VPS28-209ENST00000528142 A0A1B0GTW7 788 aa19.53■□□□□ 0.72
VPS28-209ENST00000528142 PRAMEF25A6NGN4 478 aa19.53■□□□□ 0.72
VPS28-209ENST00000528142 H3BNH8 94 aa19.53■□□□□ 0.72
VPS28-209ENST00000528142 ST6GAL1P15907 406 aa19.53■□□□□ 0.72
VPS28-209ENST00000528142 ALOX12P18054 663 aa19.53■□□□□ 0.72
VPS28-209ENST00000528142 FPR1P21462 350 aa19.53■□□□□ 0.72
VPS28-209ENST00000528142 DNAJA1P31689 397 aaKnown RBP19.53■□□□□ 0.72
VPS28-209ENST00000528142 FEN1P39748 380 aaKnown RBP19.53■□□□□ 0.72
VPS28-209ENST00000528142 LIM2P55344 173 aa19.53■□□□□ 0.72
VPS28-209ENST00000528142 IFI44LQ53G44 452 aa19.53■□□□□ 0.72
VPS28-209ENST00000528142 TMEFF1Q8IYR6 380 aa19.53■□□□□ 0.72
VPS28-209ENST00000528142 SFXN5Q8TD22 340 aa19.53■□□□□ 0.72
VPS28-209ENST00000528142 DNASE2BQ8WZ79 361 aa19.53■□□□□ 0.72
VPS28-209ENST00000528142 LZICQ8WZA0 190 aa19.53■□□□□ 0.72
VPS28-209ENST00000528142 RAB8BQ92930 207 aa19.53■□□□□ 0.72
VPS28-209ENST00000528142 TOR3AQ9H497 397 aa19.53■□□□□ 0.72
VPS28-209ENST00000528142 NDUFAF4Q9P032 175 aa19.53■□□□□ 0.72
VPS28-209ENST00000528142 TMEFF2Q9UIK5 374 aaPredicted RBP19.53■□□□□ 0.72
VPS28-209ENST00000528142 DAPP1Q9UN19 280 aa19.53■□□□□ 0.72
VPS28-209ENST00000528142 B3GALT2O43825 422 aa19.53■□□□□ 0.72
VPS28-209ENST00000528142 UBXN7O94888 489 aa19.53■□□□□ 0.72
VPS28-209ENST00000528142 EIF2S1P05198 315 aaKnown RBP19.53■□□□□ 0.72
VPS28-209ENST00000528142 BCHEP06276 602 aa19.53■□□□□ 0.72
VPS28-209ENST00000528142 CPN2P22792 545 aa19.53■□□□□ 0.72
VPS28-209ENST00000528142 MPIP34949 423 aa19.53■□□□□ 0.72
VPS28-209ENST00000528142 PTGER1P34995 402 aa19.53■□□□□ 0.72
VPS28-209ENST00000528142 MAGEA8P43361 318 aa19.53■□□□□ 0.72
VPS28-209ENST00000528142 APOFQ13790 326 aa19.53■□□□□ 0.72
VPS28-209ENST00000528142 GPR19Q15760 415 aa19.53■□□□□ 0.72
VPS28-209ENST00000528142 SPPL2AQ8TCT8 520 aa19.53■□□□□ 0.72
VPS28-209ENST00000528142 NRBF2Q96F24 287 aa19.53■□□□□ 0.72
VPS28-209ENST00000528142 TMEM19Q96HH6 336 aa19.53■□□□□ 0.72
VPS28-209ENST00000528142 SLC35G5Q96KT7 338 aa19.53■□□□□ 0.72
VPS28-209ENST00000528142 MBOAT4Q96T53 435 aa19.53■□□□□ 0.72
VPS28-209ENST00000528142 FAM60AQ9NP50 221 aa19.53■□□□□ 0.72
VPS28-209ENST00000528142 TMEM74BQ9NUR3 256 aa19.53■□□□□ 0.72
VPS28-209ENST00000528142 GIMAP4Q9NUV9 329 aa19.53■□□□□ 0.72
VPS28-209ENST00000528142 THUMPD1Q9NXG2 353 aaKnown RBP19.53■□□□□ 0.72
VPS28-209ENST00000528142 PSME2Q9UL46 239 aa19.53■□□□□ 0.72
VPS28-209ENST00000528142 RAB23Q9ULC3 237 aa19.53■□□□□ 0.72
VPS28-209ENST00000528142 DOLKQ9UPQ8 538 aa19.53■□□□□ 0.72
VPS28-209ENST00000528142 EML5Q05BV3 1969 aa19.52■□□□□ 0.72
VPS28-209ENST00000528142 AQP9O43315 295 aa19.52■□□□□ 0.72
VPS28-209ENST00000528142 HCRTR1O43613 425 aa19.52■□□□□ 0.72
VPS28-209ENST00000528142 PGM3O95394 542 aa19.52■□□□□ 0.72
VPS28-209ENST00000528142 ALPPL2P10696 532 aa19.52■□□□□ 0.72
VPS28-209ENST00000528142 ZNF10P21506 573 aaPredicted RBP19.52■□□□□ 0.72
VPS28-209ENST00000528142 BUD31P41223 144 aaPredicted RBP19.52■□□□□ 0.72
VPS28-209ENST00000528142 RXRGP48443 463 aa19.52■□□□□ 0.72
VPS28-209ENST00000528142 DMWDQ09019 674 aa19.52■□□□□ 0.72
VPS28-209ENST00000528142 EPS8Q12929 822 aa19.52■□□□□ 0.72
VPS28-209ENST00000528142 OGFOD3Q6PK18 319 aa19.52■□□□□ 0.72
VPS28-209ENST00000528142 ARMC8Q8IUR7 673 aa19.52■□□□□ 0.72
VPS28-209ENST00000528142 ZNF655Q8N720 491 aaPredicted RBP19.52■□□□□ 0.72
VPS28-209ENST00000528142 CSNK1A1LQ8N752 337 aa19.52■□□□□ 0.72
VPS28-209ENST00000528142 ARL10Q8N8L6 244 aa19.52■□□□□ 0.72
VPS28-209ENST00000528142 OR51I1Q9H343 314 aa19.52■□□□□ 0.72
VPS28-209ENST00000528142 PRDM9Q9NQV7 894 aa19.52■□□□□ 0.72
VPS28-209ENST00000528142 ZNF780BQ9Y6R6 833 aa19.52■□□□□ 0.72
VPS28-209ENST00000528142 TECTAO75443 2155 aa19.52■□□□□ 0.72
VPS28-209ENST00000528142 PRAMEF27A3QJZ7 478 aa19.51■□□□□ 0.71
VPS28-209ENST00000528142 LILRA5A6NI73 299 aa19.51■□□□□ 0.71
VPS28-209ENST00000528142 LMO7DNF2Z398 122 aa19.51■□□□□ 0.71
VPS28-209ENST00000528142 TNFRSF1BP20333 461 aa19.51■□□□□ 0.71
VPS28-209ENST00000528142 CSNK1EP49674 416 aaKnown RBP19.51■□□□□ 0.71
VPS28-209ENST00000528142 HNRNPKP61978 463 aaKnown RBP eCLIP19.51■□□□□ 0.71
VPS28-209ENST00000528142 RPS26P11Q5JNZ5 115 aaPredicted RBP19.51■□□□□ 0.71
VPS28-209ENST00000528142 KLHL35Q6PF15 583 aa19.51■□□□□ 0.71
VPS28-209ENST00000528142 OFCC1Q8IZS5 231 aa19.51■□□□□ 0.71
VPS28-209ENST00000528142 MOAP1Q96BY2 351 aa19.51■□□□□ 0.71
VPS28-209ENST00000528142 RMND5BQ96G75 393 aaPredicted RBP19.51■□□□□ 0.71
VPS28-209ENST00000528142 CSF3RQ99062 836 aa19.51■□□□□ 0.71
VPS28-209ENST00000528142 MRPS26Q9BYN8 205 aaKnown RBP19.51■□□□□ 0.71
VPS28-209ENST00000528142 AMBRA1Q9C0C7 1298 aa19.51■□□□□ 0.71
VPS28-209ENST00000528142 LYRM4Q9HD34 91 aa19.51■□□□□ 0.71
VPS28-209ENST00000528142 THSD1Q9NS62 852 aa19.51■□□□□ 0.71
VPS28-209ENST00000528142 FAM118AQ9NWS6 357 aa19.51■□□□□ 0.71
VPS28-209ENST00000528142 MS4A12Q9NXJ0 267 aa19.51■□□□□ 0.71
VPS28-209ENST00000528142 MYRFQ9Y2G1 1151 aa19.51■□□□□ 0.71
VPS28-209ENST00000528142 SAMHD1Q9Y3Z3 626 aaKnown RBP19.51■□□□□ 0.71
VPS28-209ENST00000528142 SLC22A7Q9Y694 548 aa19.51■□□□□ 0.71
VPS28-209ENST00000528142 C5orf58C9J3I9 102 aa19.51■□□□□ 0.71
VPS28-209ENST00000528142 HS6ST1O60243 411 aa19.51■□□□□ 0.71
VPS28-209ENST00000528142 OR12D1P0DN82 309 aa19.51■□□□□ 0.71
VPS28-209ENST00000528142 MATN1P21941 496 aa19.51■□□□□ 0.71
VPS28-209ENST00000528142 ARHGDIAP52565 204 aa19.51■□□□□ 0.71
VPS28-209ENST00000528142 LAPTM4AQ15012 233 aa19.51■□□□□ 0.71
VPS28-209ENST00000528142 RNF220Q5VTB9 566 aa19.51■□□□□ 0.71
VPS28-209ENST00000528142 FOXB2Q5VYV0 432 aa19.51■□□□□ 0.71
VPS28-209ENST00000528142 BHLHB9Q6PI77 547 aa19.51■□□□□ 0.71
VPS28-209ENST00000528142 TMEM107Q6UX40 140 aa19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms