RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 TRPC4Q9UBN4 977 aa3.36□□□□□ -1.87
CD44-215ENST00000525241 TEKT2Q9UIF3 430 aa3.36□□□□□ -1.87
CD44-215ENST00000525241 FOXA2Q9Y261 457 aaPredicted RBP3.36□□□□□ -1.87
CD44-215ENST00000525241 MRPL11Q9Y3B7 192 aaKnown RBP3.36□□□□□ -1.87
CD44-215ENST00000525241 C5orf51A6NDU8 294 aa3.35□□□□□ -1.87
CD44-215ENST00000525241 ANXA9O76027 345 aa3.35□□□□□ -1.87
CD44-215ENST00000525241 TXNDC12O95881 172 aa3.35□□□□□ -1.87
CD44-215ENST00000525241 IGHG3P01860 377 aa3.35□□□□□ -1.87
CD44-215ENST00000525241 FOSL2P15408 326 aa3.35□□□□□ -1.87
CD44-215ENST00000525241 ELK3P41970 407 aa3.35□□□□□ -1.87
CD44-215ENST00000525241 SMSP52788 366 aa3.35□□□□□ -1.87
CD44-215ENST00000525241 KIAA1024LP59773 190 aa3.35□□□□□ -1.87
CD44-215ENST00000525241 HSPA14Q0VDF9 509 aa3.35□□□□□ -1.87
CD44-215ENST00000525241 MORF4L2Q15014 288 aa3.35□□□□□ -1.87
CD44-215ENST00000525241 VWA2Q5GFL6 755 aa3.35□□□□□ -1.87
CD44-215ENST00000525241 WDR25Q64LD2 544 aaPredicted RBP3.35□□□□□ -1.87
CD44-215ENST00000525241 ARMCX5Q6P1M9 558 aa3.35□□□□□ -1.87
CD44-215ENST00000525241 CARNMT1Q8N4J0 409 aa3.35□□□□□ -1.87
CD44-215ENST00000525241 LPCAT1Q8NF37 534 aa3.35□□□□□ -1.87
CD44-215ENST00000525241 OR1K1Q8NGR3 316 aa3.35□□□□□ -1.87
CD44-215ENST00000525241 OR4L1Q8NH43 312 aa3.35□□□□□ -1.87
CD44-215ENST00000525241 TYMSOSQ8TAI1 123 aa3.35□□□□□ -1.87
CD44-215ENST00000525241 GDF3Q9NR23 364 aa3.35□□□□□ -1.87
CD44-215ENST00000525241 ZNF446Q9NWS9 450 aa3.35□□□□□ -1.87
CD44-215ENST00000525241 CLEC5AQ9NY25 188 aa3.35□□□□□ -1.87
CD44-215ENST00000525241 MAD2L2Q9UI95 211 aa3.35□□□□□ -1.87
CD44-215ENST00000525241 FBXW2Q9UKT8 454 aa3.35□□□□□ -1.87
CD44-215ENST00000525241 NOL7Q9UMY1 257 aaKnown RBP3.35□□□□□ -1.87
CD44-215ENST00000525241 EXOC6BQ9Y2D4 811 aa3.35□□□□□ -1.87
CD44-215ENST00000525241 FOXI3A8MTJ6 420 aaPredicted RBP3.34□□□□□ -1.87
CD44-215ENST00000525241 PDGFBP01127 241 aaPredicted RBP3.34□□□□□ -1.87
CD44-215ENST00000525241 FAM200BP0CF97 657 aa3.34□□□□□ -1.87
CD44-215ENST00000525241 CASP3P42574 277 aa3.34□□□□□ -1.87
CD44-215ENST00000525241 UCP2P55851 309 aa3.34□□□□□ -1.87
CD44-215ENST00000525241 KCNK10P57789 538 aa3.34□□□□□ -1.87
CD44-215ENST00000525241 P2RY14Q15391 338 aa3.34□□□□□ -1.87
CD44-215ENST00000525241 EPC2Q52LR7 807 aa3.34□□□□□ -1.87
CD44-215ENST00000525241 IFI44LQ53G44 452 aa3.34□□□□□ -1.87
CD44-215ENST00000525241 C1orf189Q5VU69 101 aa3.34□□□□□ -1.87
CD44-215ENST00000525241 Q6ZRG5 221 aa3.34□□□□□ -1.87
CD44-215ENST00000525241 HIPK1Q86Z02 1210 aa3.34□□□□□ -1.87
CD44-215ENST00000525241 STHQ8IWL8 128 aa3.34□□□□□ -1.87
CD44-215ENST00000525241 FBXW8Q8N3Y1 598 aa3.34□□□□□ -1.87
CD44-215ENST00000525241 SAMD12Q8N8I0 201 aa3.34□□□□□ -1.87
CD44-215ENST00000525241 ZNF491Q8N8L2 437 aa3.34□□□□□ -1.87
CD44-215ENST00000525241 CHDHQ8NE62 594 aaPredicted RBP3.34□□□□□ -1.87
CD44-215ENST00000525241 OR4F5Q8NH21 305 aa3.34□□□□□ -1.87
CD44-215ENST00000525241 FLVCR1-AS1Q8TAF5 88 aa3.34□□□□□ -1.87
CD44-215ENST00000525241 GLYATL1Q969I3 302 aa3.34□□□□□ -1.87
CD44-215ENST00000525241 MRPL53Q96EL3 112 aaKnown RBP3.34□□□□□ -1.87
CD44-215ENST00000525241 CFAP36Q96G28 342 aa3.34□□□□□ -1.87
CD44-215ENST00000525241 CXorf58Q96LI9 332 aa3.34□□□□□ -1.87
CD44-215ENST00000525241 MRPL9Q9BYD2 267 aaKnown RBP3.34□□□□□ -1.87
CD44-215ENST00000525241 ALDH8A1Q9H2A2 487 aaPredicted RBP3.34□□□□□ -1.87
CD44-215ENST00000525241 DDX28Q9NUL7 540 aaKnown RBP3.34□□□□□ -1.87
CD44-215ENST00000525241 PRR34Q9NV39 138 aa3.34□□□□□ -1.87
CD44-215ENST00000525241 DNAJC11Q9NVH1 559 aa3.34□□□□□ -1.87
CD44-215ENST00000525241 A0A1W2PRV1 198 aa3.33□□□□□ -1.88
CD44-215ENST00000525241 E9PAM4 449 aa3.33□□□□□ -1.88
CD44-215ENST00000525241 E2F3O00716 465 aa3.33□□□□□ -1.88
CD44-215ENST00000525241 PHOX2AO14813 284 aa3.33□□□□□ -1.88
CD44-215ENST00000525241 RTN2O75298 545 aa3.33□□□□□ -1.88
CD44-215ENST00000525241 DUSP11O75319 330 aaKnown RBP3.33□□□□□ -1.88
CD44-215ENST00000525241 TPBGLP0DKB5 382 aa3.33□□□□□ -1.88
CD44-215ENST00000525241 RNLSQ5VYX0 342 aa3.33□□□□□ -1.88
CD44-215ENST00000525241 REP15Q6BDI9 236 aa3.33□□□□□ -1.88
CD44-215ENST00000525241 PARP8Q8N3A8 854 aa3.33□□□□□ -1.88
CD44-215ENST00000525241 C10orf53Q8N6V4 93 aa3.33□□□□□ -1.88
CD44-215ENST00000525241 KIAA1524Q8TCG1 905 aa3.33□□□□□ -1.88
CD44-215ENST00000525241 AGAP11Q8TF27 550 aa3.33□□□□□ -1.88
CD44-215ENST00000525241 C16orf58Q96GQ5 468 aa3.33□□□□□ -1.88
CD44-215ENST00000525241 C5orf30Q96GV9 206 aa3.33□□□□□ -1.88
CD44-215ENST00000525241 CAPNS2Q96L46 248 aa3.33□□□□□ -1.88
CD44-215ENST00000525241 SPAG8Q99932 426 aaPredicted RBP3.33□□□□□ -1.88
CD44-215ENST00000525241 SLC26A1Q9H2B4 701 aa3.33□□□□□ -1.88
CD44-215ENST00000525241 GANQ9H2C0 597 aa3.33□□□□□ -1.88
CD44-215ENST00000525241 DPEP3Q9H4B8 488 aa3.33□□□□□ -1.88
CD44-215ENST00000525241 CWC25Q9NXE8 425 aaPredicted RBP3.33□□□□□ -1.88
CD44-215ENST00000525241 ZNF107Q9UII5 783 aaPredicted RBP3.33□□□□□ -1.88
CD44-215ENST00000525241 MRTO4Q9UKD2 239 aaKnown RBP3.33□□□□□ -1.88
CD44-215ENST00000525241 TRIM49BA6NDI0 452 aa3.32□□□□□ -1.88
CD44-215ENST00000525241 STIP1P31948 543 aaKnown RBP3.32□□□□□ -1.88
CD44-215ENST00000525241 TKTL1P51854 596 aa3.32□□□□□ -1.88
CD44-215ENST00000525241 TEFQ10587 303 aa3.32□□□□□ -1.88
CD44-215ENST00000525241 PEX6Q13608 980 aa3.32□□□□□ -1.88
CD44-215ENST00000525241 PDE7AQ13946 482 aa3.32□□□□□ -1.88
CD44-215ENST00000525241 EMC2Q15006 297 aa3.32□□□□□ -1.88
CD44-215ENST00000525241 C17orf58Q2M2W7 97 aa3.32□□□□□ -1.88
CD44-215ENST00000525241 MPPE1Q53F39 396 aa3.32□□□□□ -1.88
CD44-215ENST00000525241 LIPJQ5W064 366 aa3.32□□□□□ -1.88
CD44-215ENST00000525241 CCDC91Q7Z6B0 441 aa3.32□□□□□ -1.88
CD44-215ENST00000525241 SERPINA12Q8IW75 414 aa3.32□□□□□ -1.88
CD44-215ENST00000525241 FBXL16Q8N461 479 aa3.32□□□□□ -1.88
CD44-215ENST00000525241 SFRP1Q8N474 314 aa3.32□□□□□ -1.88
CD44-215ENST00000525241 RELL2Q8NC24 303 aaPredicted RBP3.32□□□□□ -1.88
CD44-215ENST00000525241 ICA1LQ8NDH6 482 aa3.32□□□□□ -1.88
CD44-215ENST00000525241 OR6M1Q8NGM8 313 aa3.32□□□□□ -1.88
CD44-215ENST00000525241 OR6T1Q8NGN1 323 aa3.32□□□□□ -1.88
CD44-215ENST00000525241 SLC25A19Q9HC21 320 aa3.32□□□□□ -1.88
CD44-215ENST00000525241 ZCCHC3Q9NUD5 404 aaKnown RBP3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms