RNA–Protein interactions for RNA: ENST00000417088.2

RPS28-201, Transcript of ribosomal protein S28, humanhuman

TSL 2

Gene RPS28, Length 334 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-201ENST00000417088 UBTD2Q8WUN7 234 aa13.66□□□□□ -0.22
RPS28-201ENST00000417088 NRGNQ92686 78 aa13.66□□□□□ -0.22
RPS28-201ENST00000417088 RGMAQ96B86 450 aa13.66□□□□□ -0.22
RPS28-201ENST00000417088 SARAFQ96BY9 339 aa13.66□□□□□ -0.22
RPS28-201ENST00000417088 RBM18Q96H35 190 aaKnown RBP13.66□□□□□ -0.22
RPS28-201ENST00000417088 FBXL20Q96IG2 436 aa13.66□□□□□ -0.22
RPS28-201ENST00000417088 ERP44Q9BS26 406 aa13.66□□□□□ -0.22
RPS28-201ENST00000417088 NMRAL1Q9HBL8 299 aa13.66□□□□□ -0.22
RPS28-201ENST00000417088 PROK2Q9HC23 129 aa13.66□□□□□ -0.22
RPS28-201ENST00000417088 SLC24A3Q9HC58 644 aa13.66□□□□□ -0.22
RPS28-201ENST00000417088 IGSF5Q9NSI5 407 aa13.66□□□□□ -0.22
RPS28-201ENST00000417088 MS4A12Q9NXJ0 267 aa13.66□□□□□ -0.22
RPS28-201ENST00000417088 WHRNQ9P202 907 aa13.66□□□□□ -0.22
RPS28-201ENST00000417088 SPRR3Q9UBC9 169 aa13.66□□□□□ -0.22
RPS28-201ENST00000417088 RNF14Q9UBS8 474 aa13.66□□□□□ -0.22
RPS28-201ENST00000417088 NF1P21359 2839 aa13.66□□□□□ -0.22
RPS28-201ENST00000417088 ITPR3Q14573 2671 aa13.66□□□□□ -0.22
RPS28-201ENST00000417088 WASHC1A8K0Z3 465 aa13.65□□□□□ -0.22
RPS28-201ENST00000417088 SUPT3HB4E1H0 165 aa13.65□□□□□ -0.22
RPS28-201ENST00000417088 PLPP1O14494 284 aa13.65□□□□□ -0.22
RPS28-201ENST00000417088 DYRK3O43781 588 aa13.65□□□□□ -0.22
RPS28-201ENST00000417088 KERAO60938 352 aa13.65□□□□□ -0.22
RPS28-201ENST00000417088 SUPT3HO75486 399 aa13.65□□□□□ -0.22
RPS28-201ENST00000417088 ALOX15P16050 662 aaPredicted RBP13.65□□□□□ -0.22
RPS28-201ENST00000417088 ART1P52961 327 aa13.65□□□□□ -0.22
RPS28-201ENST00000417088 HNRNPH2P55795 449 aaKnown RBP13.65□□□□□ -0.22
RPS28-201ENST00000417088 PLIN5Q00G26 463 aa13.65□□□□□ -0.22
RPS28-201ENST00000417088 DDX39BQ13838 428 aaKnown RBP13.65□□□□□ -0.22
RPS28-201ENST00000417088 PRAMEF20Q5VT98 475 aa13.65□□□□□ -0.22
RPS28-201ENST00000417088 RAPH1Q70E73 1250 aa13.65□□□□□ -0.22
RPS28-201ENST00000417088 LRRC25Q8N386 305 aaPredicted RBP13.65□□□□□ -0.22
RPS28-201ENST00000417088 PPM1NQ8N819 430 aa13.65□□□□□ -0.22
RPS28-201ENST00000417088 HUS1BQ8NHY5 278 aa13.65□□□□□ -0.22
RPS28-201ENST00000417088 TANKQ92844 425 aa13.65□□□□□ -0.22
RPS28-201ENST00000417088 SPACA9Q96E40 222 aaPredicted RBP13.65□□□□□ -0.22
RPS28-201ENST00000417088 ART5Q96L15 291 aa13.65□□□□□ -0.22
RPS28-201ENST00000417088 EXO5Q9H790 373 aa13.65□□□□□ -0.22
RPS28-201ENST00000417088 ZNF703Q9H7S9 590 aaPredicted RBP13.65□□□□□ -0.22
RPS28-201ENST00000417088 ZFP64Q9NPA5 681 aa13.65□□□□□ -0.22
RPS28-201ENST00000417088 ALKBH4Q9NXW9 302 aa13.65□□□□□ -0.22
RPS28-201ENST00000417088 GRHL1Q9NZI5 618 aa13.65□□□□□ -0.22
RPS28-201ENST00000417088 ADGRE2Q9UHX3 823 aa13.65□□□□□ -0.22
RPS28-201ENST00000417088 L3MBTL1Q9Y468 752 aa13.65□□□□□ -0.22
RPS28-201ENST00000417088 LRRC3CA6NJW4 275 aa13.64□□□□□ -0.23
RPS28-201ENST00000417088 PROM1O43490 865 aa13.64□□□□□ -0.23
RPS28-201ENST00000417088 PRKRAO75569 313 aaKnown RBP13.64□□□□□ -0.23
RPS28-201ENST00000417088 LTA4HP09960 611 aaKnown RBP13.64□□□□□ -0.23
RPS28-201ENST00000417088 MTHFD2P13995 350 aa13.64□□□□□ -0.23
RPS28-201ENST00000417088 GABRA1P14867 456 aa13.64□□□□□ -0.23
RPS28-201ENST00000417088 EPB42P16452 691 aa13.64□□□□□ -0.23
RPS28-201ENST00000417088 CRABP2P29373 138 aa13.64□□□□□ -0.23
RPS28-201ENST00000417088 DNAJA1P31689 397 aaKnown RBP13.64□□□□□ -0.23
RPS28-201ENST00000417088 PIK3CBP42338 1070 aa13.64□□□□□ -0.23
RPS28-201ENST00000417088 RAP1GDS1P52306 607 aa13.64□□□□□ -0.23
RPS28-201ENST00000417088 HERVK_113P63132 956 aa13.64□□□□□ -0.23
RPS28-201ENST00000417088 ERVK-8P63133 956 aa13.64□□□□□ -0.23
RPS28-201ENST00000417088 KCNJ2P63252 427 aa13.64□□□□□ -0.23
RPS28-201ENST00000417088 TNFRSF17Q02223 184 aa13.64□□□□□ -0.23
RPS28-201ENST00000417088 TBL3Q12788 808 aaKnown RBP13.64□□□□□ -0.23
RPS28-201ENST00000417088 SLMAPQ14BN4 828 aa13.64□□□□□ -0.23
RPS28-201ENST00000417088 SLC25A35Q3KQZ1 300 aa13.64□□□□□ -0.23
RPS28-201ENST00000417088 KBTBD12Q3ZCT8 623 aa13.64□□□□□ -0.23
RPS28-201ENST00000417088 RIPPLY2Q5TAB7 128 aa13.64□□□□□ -0.23
RPS28-201ENST00000417088 TBC1D1Q86TI0 1168 aaPredicted RBP13.64□□□□□ -0.23
RPS28-201ENST00000417088 ST13P4Q8IZP2 240 aaPredicted RBP13.64□□□□□ -0.23
RPS28-201ENST00000417088 FBXW8Q8N3Y1 598 aa13.64□□□□□ -0.23
RPS28-201ENST00000417088 ZCCHC7Q8N3Z6 543 aaKnown RBP13.64□□□□□ -0.23
RPS28-201ENST00000417088 TEX9Q8N6V9 391 aa13.64□□□□□ -0.23
RPS28-201ENST00000417088 MYRIPQ8NFW9 859 aa13.64□□□□□ -0.23
RPS28-201ENST00000417088 NXNL1Q96CM4 212 aa13.64□□□□□ -0.23
RPS28-201ENST00000417088 MTERF1Q99551 399 aaKnown RBP13.64□□□□□ -0.23
RPS28-201ENST00000417088 ERVK-6Q9BXR3 956 aa13.64□□□□□ -0.23
RPS28-201ENST00000417088 ZNF717Q9BY31 904 aaPredicted RBP13.64□□□□□ -0.23
RPS28-201ENST00000417088 ACKR4Q9NPB9 350 aa13.64□□□□□ -0.23
RPS28-201ENST00000417088 DMRT3Q9NQL9 472 aa13.64□□□□□ -0.23
RPS28-201ENST00000417088 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.64□□□□□ -0.23
RPS28-201ENST00000417088 CNIH4Q9P003 139 aa13.64□□□□□ -0.23
RPS28-201ENST00000417088 PHF11Q9UIL8 331 aa13.64□□□□□ -0.23
RPS28-201ENST00000417088 CNOT11Q9UKZ1 510 aaKnown RBP13.64□□□□□ -0.23
RPS28-201ENST00000417088 BOKQ9UMX3 212 aaPredicted RBP13.64□□□□□ -0.23
RPS28-201ENST00000417088 ERVK-19Q9WJR5 959 aa13.64□□□□□ -0.23
RPS28-201ENST00000417088 TSC22D4Q9Y3Q8 395 aa13.64□□□□□ -0.23
RPS28-201ENST00000417088 CHCHD2Q9Y6H1 151 aaPredicted RBP13.64□□□□□ -0.23
RPS28-201ENST00000417088 ANKHD1Q8IWZ3 2542 aaKnown RBP13.64□□□□□ -0.23
RPS28-201ENST00000417088 IQANK1A0A1B0GTG1 560 aa13.63□□□□□ -0.23
RPS28-201ENST00000417088 RAD51CO43502 376 aa13.63□□□□□ -0.23
RPS28-201ENST00000417088 ZWINTO95229 277 aa13.63□□□□□ -0.23
RPS28-201ENST00000417088 GPR75O95800 540 aa13.63□□□□□ -0.23
RPS28-201ENST00000417088 FBXO45P0C2W1 286 aa13.63□□□□□ -0.23
RPS28-201ENST00000417088 SERPINB3P29508 390 aa13.63□□□□□ -0.23
RPS28-201ENST00000417088 TLX1P31314 330 aaPredicted RBP13.63□□□□□ -0.23
RPS28-201ENST00000417088 ARFIP1P53367 373 aa13.63□□□□□ -0.23
RPS28-201ENST00000417088 SLC37A1P57057 533 aa13.63□□□□□ -0.23
RPS28-201ENST00000417088 RPS13P62277 151 aaKnown RBP13.63□□□□□ -0.23
RPS28-201ENST00000417088 ZNF267Q14586 743 aaPredicted RBP13.63□□□□□ -0.23
RPS28-201ENST00000417088 EBPQ15125 230 aaKnown RBP13.63□□□□□ -0.23
RPS28-201ENST00000417088 SPRED3Q2MJR0 410 aa13.63□□□□□ -0.23
RPS28-201ENST00000417088 MRM1Q6IN84 353 aaKnown RBP13.63□□□□□ -0.23
RPS28-201ENST00000417088 ARSKQ6UWY0 536 aa13.63□□□□□ -0.23
RPS28-201ENST00000417088 SEM1Q6ZVN7 128 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms