RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 PINX1Q96BK5 328 aaKnown RBP3.78□□□□□ -1.8
HMGB1-204ENST00000399489 RAB39BQ96DA2 213 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 MTERF3Q96E29 417 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 MRPL53Q96EL3 112 aaKnown RBP3.78□□□□□ -1.8
HMGB1-204ENST00000399489 PRRC1Q96M27 445 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 BTBD10Q9BSF8 475 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 WACQ9BTA9 647 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 WRAP53Q9BUR4 548 aaKnown RBP3.78□□□□□ -1.8
HMGB1-204ENST00000399489 SPATA16Q9BXB7 569 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 PRRG4Q9BZD6 226 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 RHBGQ9H310 441 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 FOXP1Q9H334 677 aaPredicted RBP3.78□□□□□ -1.8
HMGB1-204ENST00000399489 RGCCQ9H4X1 137 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 GSN-AS1Q9NRJ2 163 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 NPAP1Q9NZP6 1156 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 P2RX2Q9UBL9 471 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 TTC7AQ9ULT0 858 aaPredicted RBP3.78□□□□□ -1.8
HMGB1-204ENST00000399489 PIGLQ9Y2B2 252 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 RAP2CQ9Y3L5 183 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 CBY1Q9Y3M2 126 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP3.78□□□□□ -1.83e-7■■■■□ 26.4
HMGB1-204ENST00000399489 WDR17Q8IZU2 1322 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 FGD5Q6ZNL6 1462 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 HECW2Q9P2P5 1572 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 A0A0J9YYE9 177 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 B4DGG1 531 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 HAS3O00219 553 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 SOCS2O14508 198 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 POLR1CO15160 346 aaPredicted RBP3.78□□□□□ -1.8
HMGB1-204ENST00000399489 INSIG1O15503 277 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 KCNN4O15554 427 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 ZW10O43264 779 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 UGDHO60701 494 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 CRTAPO75718 401 aaPredicted RBP3.78□□□□□ -1.8
HMGB1-204ENST00000399489 BAG3O95817 575 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 WDPCPO95876 746 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 TRBC1P01850 177 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 OPN1LWP04000 364 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 LCKP06239 509 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 CRYGBP07316 175 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 GOT1P17174 413 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 AMD1P17707 334 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 NR4A2P43354 598 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 NAMPTP43490 491 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 RAD23BP54727 409 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 CDH4P55283 916 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 DAOAP59103 153 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 ARPC4P59998 168 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 PJVKQ0ZLH3 352 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 MERTKQ12866 999 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 SLAQ13239 276 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 NCF4Q15080 339 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 STK38Q15208 465 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 RBBP7Q16576 425 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 ALKBH6Q3KRA9 238 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 ZNF528Q3MIS6 628 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 ZNF260Q3ZCT1 412 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 SMUG1Q53HV7 270 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 CAPN13Q6MZZ7 669 aaPredicted RBP3.78□□□□□ -1.8
HMGB1-204ENST00000399489 G2E3Q7L622 706 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 SLC22A16Q86VW1 577 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 UEVLDQ8IX04 471 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 HORMAD2Q8N7B1 307 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 NANOGP1Q8N7R0 232 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 ZNF565Q8N9K5 539 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 DNAAF3Q8N9W5 541 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 THAP8Q8NA92 274 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 C7orf57Q8NEG2 295 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 OR4K14Q8NGD5 310 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 OR13F1Q8NGS4 319 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 FAM81AQ8TBF8 368 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 GIPC3Q8TF64 312 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 SMPDL3BQ92485 455 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 TAAR8Q969N4 342 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 ZNF419Q96HQ0 510 aaPredicted RBP3.78□□□□□ -1.8
HMGB1-204ENST00000399489 TRIM62Q9BVG3 475 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 FRMD8P1Q9BZ68 369 aaPredicted RBP3.78□□□□□ -1.8
HMGB1-204ENST00000399489 SPRTNQ9H040 489 aaPredicted RBP3.78□□□□□ -1.8
HMGB1-204ENST00000399489 FAM234AQ9H0X4 552 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 SLC26A1Q9H2B4 701 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 FBXO44Q9H4M3 255 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 ELOVL3Q9HB03 270 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 MLXIPLQ9NP71 852 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 CHRAC1Q9NRG0 131 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 PKD2L2Q9NZM6 624 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 C1RLQ9NZP8 487 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 BCAP29Q9UHQ4 241 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 CDH9Q9ULB4 789 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 ZNF490Q9ULM2 529 aaPredicted RBP3.78□□□□□ -1.8
HMGB1-204ENST00000399489 PADI3Q9ULW8 664 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 CA5BQ9Y2D0 317 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 TMED3Q9Y3Q3 217 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 LRP12Q9Y561 859 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 RNF215Q9Y6U7 377 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 NINLQ9Y2I6 1382 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 MAPKBP1O60336 1514 aa3.78□□□□□ -1.81
HMGB1-204ENST00000399489 CEP170Q5SW79 1584 aa3.78□□□□□ -1.81
HMGB1-204ENST00000399489 ERICH2A1L162 156 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 HYKKA2RU49 373 aa3.77□□□□□ -1.81
HMGB1-204ENST00000399489 SNTNA6NMZ2 147 aa3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms