RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 FBXO46Q6PJ61 603 aaPredicted RBP7.03□□□□□ -1.28
VPS13A-202ENST00000357409 MEX3BQ6ZN04 569 aaKnown RBP7.03□□□□□ -1.28
VPS13A-202ENST00000357409 KCNJ9Q92806 393 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 RBP7Q96R05 134 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 RBM4BQ9BQ04 359 aaKnown RBP7.03□□□□□ -1.28
VPS13A-202ENST00000357409 RBM4Q9BWF3 364 aaKnown RBP7.03□□□□□ -1.28
VPS13A-202ENST00000357409 IL1RAPQ9NPH3 570 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 PLSCR3Q9NRY6 295 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 NUMBLQ9Y6R0 609 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 DCDC2BA2VCK2 349 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 HTR1AP08908 422 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 TPSB2P20231 275 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 ARSDP51689 593 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 EMP2P54851 167 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 TPSAB1Q15661 275 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 TMEM35AQ53FP2 167 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 PATE1Q8WXA2 126 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 ITFG2Q969R8 447 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 BORCS6Q96GS4 357 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 WDR92Q96MX6 357 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 OR2M4Q96R27 311 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 NOCTQ9UK39 431 aaKnown RBP7.03□□□□□ -1.28
VPS13A-202ENST00000357409 MAP2K7O14733 419 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 PRKCAP17252 672 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 PON3Q15166 354 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 TPRG1LQ5T0D9 272 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 CCDC80Q76M96 950 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 PNLDC1Q8NA58 520 aaKnown RBP7.03□□□□□ -1.28
VPS13A-202ENST00000357409 RIT1Q92963 219 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 PYURFQ96I23 114 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 MED28Q9H204 178 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 FAM86C1Q9NVL1 165 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 PADI2Q9Y2J8 665 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 DLX3O60479 287 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 CREG1O75629 220 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 GABRR1P24046 479 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 DNAJB1P25685 340 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 PTGR1Q14914 329 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 CLLU1OSQ5K130 101 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 LYSMD4Q5XG99 296 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 ZC3H10Q96K80 434 aaKnown RBP7.03□□□□□ -1.28
VPS13A-202ENST00000357409 POLE3Q9NRF9 147 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 ENOPH1Q9UHY7 261 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 M0R036 132 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 LINC01565O15544 149 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 SEC14L2O76054 403 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 RPS5P46782 204 aaKnown RBP7.03□□□□□ -1.28
VPS13A-202ENST00000357409 PSMA6P60900 246 aaKnown RBP7.03□□□□□ -1.28
VPS13A-202ENST00000357409 POU6F2P78424 691 aaPredicted RBP7.03□□□□□ -1.28
VPS13A-202ENST00000357409 DUSP2Q05923 314 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 DCTN2Q13561 401 aaKnown RBP7.03□□□□□ -1.28
VPS13A-202ENST00000357409 INAVAQ3KP66 663 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 ZFP69Q49AA0 526 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 GTDC1Q4AE62 458 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 KLHDC8AQ8IYD2 350 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 GALNT15Q8N3T1 639 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 NINJ1Q92982 152 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 FAM46BQ96A09 425 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 MRPL38Q96DV4 380 aaKnown RBP7.03□□□□□ -1.28
VPS13A-202ENST00000357409 VRK1Q99986 396 aaPredicted RBP7.03□□□□□ -1.28
VPS13A-202ENST00000357409 ZNF471Q9BX82 626 aaPredicted RBP7.03□□□□□ -1.28
VPS13A-202ENST00000357409 QRSL1Q9H0R6 528 aaKnown RBP7.03□□□□□ -1.28
VPS13A-202ENST00000357409 ZNF442Q9H7R0 627 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 ANKRD34BA5PLL1 514 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 CHST10O43529 356 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 LDOC1O95751 146 aaPredicted RBP7.03□□□□□ -1.28
VPS13A-202ENST00000357409 TIMP1P01033 207 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 IMPDH1P20839 514 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 ENDOVQ8N8Q3 282 aaKnown RBP7.03□□□□□ -1.28
VPS13A-202ENST00000357409 SCCPDHQ8NBX0 429 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 ZNF548Q8NEK5 533 aaPredicted RBP7.03□□□□□ -1.28
VPS13A-202ENST00000357409 TMEM175Q9BSA9 504 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 INPP5KQ9BT40 448 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 SLC46A2Q9BY10 475 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 ARRDC1-AS1Q9H2J1 176 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 J3KTA2 159 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 F2P00734 622 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 TMEM225BP0DP42 221 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 MAGEA2P43356 314 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 LRRC38Q5VT99 294 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 OR4C11Q6IEV9 310 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 PTCRAQ6ISU1 281 aaPredicted RBP7.03□□□□□ -1.28
VPS13A-202ENST00000357409 ARHGAP22Q7Z5H3 698 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 DEFB108BQ8NET1 73 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 SMPDL3AQ92484 453 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 ACTR6Q9GZN1 396 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 TMEM168Q9H0V1 697 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 NAALAD2Q9Y3Q0 740 aa7.03□□□□□ -1.28
VPS13A-202ENST00000357409 ANHXE9PGG2 379 aa7.02□□□□□ -1.28
VPS13A-202ENST00000357409 GNAO1P09471 354 aa7.02□□□□□ -1.28
VPS13A-202ENST00000357409 TCN2P20062 427 aa7.02□□□□□ -1.28
VPS13A-202ENST00000357409 ZNF678Q5SXM1 525 aa7.02□□□□□ -1.28
VPS13A-202ENST00000357409 SYCE2Q6PIF2 218 aa7.02□□□□□ -1.28
VPS13A-202ENST00000357409 Q6ZPB1 254 aaPredicted RBP7.02□□□□□ -1.28
VPS13A-202ENST00000357409 KLHL36Q8N4N3 616 aa7.02□□□□□ -1.28
VPS13A-202ENST00000357409 DCLRE1CQ96SD1 692 aaKnown RBP7.02□□□□□ -1.28
VPS13A-202ENST00000357409 TTYH1Q9H313 450 aaPredicted RBP7.02□□□□□ -1.28
VPS13A-202ENST00000357409 DUXAA6NLW8 204 aa7.02□□□□□ -1.29
VPS13A-202ENST00000357409 TTLL8A6PVC2 850 aa7.02□□□□□ -1.29
VPS13A-202ENST00000357409 LSM1O15116 133 aaKnown RBP7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms