RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 DUSP2Q05923 314 aa20.73■□□□□ 0.91
SHMT1-203ENST00000354098 SERTAD2Q14140 314 aa20.73■□□□□ 0.91
SHMT1-203ENST00000354098 PAPD4Q6PIY7 484 aaKnown RBP20.73■□□□□ 0.91
SHMT1-203ENST00000354098 KRTCAP2Q8N6L1 136 aa20.73■□□□□ 0.91
SHMT1-203ENST00000354098 DOK4Q8TEW6 326 aa20.73■□□□□ 0.91
SHMT1-203ENST00000354098 CNRIP1Q96F85 164 aaPredicted RBP20.73■□□□□ 0.91
SHMT1-203ENST00000354098 MARK4Q96L34 752 aa20.73■□□□□ 0.91
SHMT1-203ENST00000354098 IMMP1LQ96LU5 166 aa20.73■□□□□ 0.91
SHMT1-203ENST00000354098 TRIM55Q9BYV6 548 aa20.73■□□□□ 0.91
SHMT1-203ENST00000354098 TCF7L2Q9NQB0 619 aa20.73■□□□□ 0.91
SHMT1-203ENST00000354098 EHD3Q9NZN3 535 aa20.73■□□□□ 0.91
SHMT1-203ENST00000354098 G3BP2Q9UN86 482 aaKnown RBP20.73■□□□□ 0.91
SHMT1-203ENST00000354098 KCNMB2Q9Y691 235 aa20.73■□□□□ 0.91
SHMT1-203ENST00000354098 HPP00738 406 aa20.72■□□□□ 0.91
SHMT1-203ENST00000354098 ASMTP46597 345 aa20.72■□□□□ 0.91
SHMT1-203ENST00000354098 SEC24CP53992 1094 aa20.72■□□□□ 0.91
SHMT1-203ENST00000354098 Q0VFX4 171 aa20.72■□□□□ 0.91
SHMT1-203ENST00000354098 ACAD11Q709F0 780 aa20.72■□□□□ 0.91
SHMT1-203ENST00000354098 SPATA19Q7Z5L4 167 aa20.72■□□□□ 0.91
SHMT1-203ENST00000354098 PTPMT1Q8WUK0 201 aaPredicted RBP20.72■□□□□ 0.91
SHMT1-203ENST00000354098 ZNF681Q96N22 645 aa20.72■□□□□ 0.91
SHMT1-203ENST00000354098 CATSPER2Q96P56 530 aa20.72■□□□□ 0.91
SHMT1-203ENST00000354098 LPAR4Q99677 370 aa20.72■□□□□ 0.91
SHMT1-203ENST00000354098 REEP4Q9H6H4 257 aa20.72■□□□□ 0.91
SHMT1-203ENST00000354098 PSME2Q9UL46 239 aa20.72■□□□□ 0.91
SHMT1-203ENST00000354098 MGAQ8IWI9 3026 aa20.72■□□□□ 0.91
SHMT1-203ENST00000354098 PKD1L2Q7Z442 2459 aa20.72■□□□□ 0.91
SHMT1-203ENST00000354098 A0A0G2JND7 137 aa20.71■□□□□ 0.91
SHMT1-203ENST00000354098 GABRR3A8MPY1 467 aa20.71■□□□□ 0.91
SHMT1-203ENST00000354098 CELA2AP08217 269 aa20.71■□□□□ 0.91
SHMT1-203ENST00000354098 CPMP14384 443 aa20.71■□□□□ 0.91
SHMT1-203ENST00000354098 PTGER1P34995 402 aa20.71■□□□□ 0.91
SHMT1-203ENST00000354098 STT3AP46977 705 aa20.71■□□□□ 0.91
SHMT1-203ENST00000354098 PARP9Q8IXQ6 854 aa20.71■□□□□ 0.91
SHMT1-203ENST00000354098 RBM18Q96H35 190 aaKnown RBP20.71■□□□□ 0.91
SHMT1-203ENST00000354098 FER1L6-AS2Q96M78 137 aa20.71■□□□□ 0.91
SHMT1-203ENST00000354098 DGAT2Q96PD7 388 aa20.71■□□□□ 0.91
SHMT1-203ENST00000354098 ING2Q9H160 280 aa20.71■□□□□ 0.91
SHMT1-203ENST00000354098 ADAP2Q9NPF8 381 aa20.71■□□□□ 0.91
SHMT1-203ENST00000354098 SLC35C2Q9NQQ7 365 aa20.71■□□□□ 0.91
SHMT1-203ENST00000354098 AIG1Q9NVV5 245 aa20.71■□□□□ 0.91
SHMT1-203ENST00000354098 E9PBE3 544 aa20.7■□□□□ 0.91
SHMT1-203ENST00000354098 KLHL41O60662 606 aa20.7■□□□□ 0.91
SHMT1-203ENST00000354098 DNAJB5O75953 348 aa20.7■□□□□ 0.91
SHMT1-203ENST00000354098 SLC35E2P0CK97 266 aa20.7■□□□□ 0.91
SHMT1-203ENST00000354098 PORP16435 677 aaPredicted RBP20.7■□□□□ 0.91
SHMT1-203ENST00000354098 TNNI3P19429 210 aa20.7■□□□□ 0.91
SHMT1-203ENST00000354098 LSP1P33241 339 aa20.7■□□□□ 0.91
SHMT1-203ENST00000354098 NME5P56597 212 aa20.7■□□□□ 0.91
SHMT1-203ENST00000354098 GNGT1P63211 74 aa20.7■□□□□ 0.91
SHMT1-203ENST00000354098 ELAVL1Q15717 326 aaKnown RBP20.7■□□□□ 0.91
SHMT1-203ENST00000354098 ZNF385BQ569K4 471 aa20.7■□□□□ 0.91
SHMT1-203ENST00000354098 RIMKLAQ8IXN7 391 aa20.7■□□□□ 0.91
SHMT1-203ENST00000354098 ST13P4Q8IZP2 240 aaPredicted RBP20.7■□□□□ 0.91
SHMT1-203ENST00000354098 TMEM102Q8N9M5 508 aaPredicted RBP20.7■□□□□ 0.91
SHMT1-203ENST00000354098 NFAM1Q8NET5 270 aaPredicted RBP20.7■□□□□ 0.91
SHMT1-203ENST00000354098 CHMP6Q96FZ7 201 aa20.7■□□□□ 0.91
SHMT1-203ENST00000354098 VPS50Q96JG6 964 aa20.7■□□□□ 0.91
SHMT1-203ENST00000354098 TUBB6Q9BUF5 446 aa20.7■□□□□ 0.91
SHMT1-203ENST00000354098 TAS2R7Q9NYW3 318 aa20.7■□□□□ 0.91
SHMT1-203ENST00000354098 GPR45Q9Y5Y3 372 aa20.7■□□□□ 0.91
SHMT1-203ENST00000354098 ZNF780BQ9Y6R6 833 aa20.7■□□□□ 0.91
SHMT1-203ENST00000354098 SAGE2PA6NJ88 616 aa20.7■□□□□ 0.9
SHMT1-203ENST00000354098 C17orf105B2RV13 164 aa20.7■□□□□ 0.9
SHMT1-203ENST00000354098 ANKRD28O15084 1053 aa20.7■□□□□ 0.9
SHMT1-203ENST00000354098 UBDO15205 165 aa20.7■□□□□ 0.9
SHMT1-203ENST00000354098 OR10H2O60403 315 aa20.7■□□□□ 0.9
SHMT1-203ENST00000354098 TROVE2P10155 538 aaKnown RBP eCLIP20.7■□□□□ 0.9
SHMT1-203ENST00000354098 CLDN8P56748 225 aa20.7■□□□□ 0.9
SHMT1-203ENST00000354098 PLIN5Q00G26 463 aa20.7■□□□□ 0.9
SHMT1-203ENST00000354098 BIKQ13323 160 aa20.7■□□□□ 0.9
SHMT1-203ENST00000354098 PDE7AQ13946 482 aa20.7■□□□□ 0.9
SHMT1-203ENST00000354098 TBR1Q16650 682 aa20.7■□□□□ 0.9
SHMT1-203ENST00000354098 GPR155Q7Z3F1 870 aa20.7■□□□□ 0.9
SHMT1-203ENST00000354098 CCDC116Q8IYX3 515 aa20.7■□□□□ 0.9
SHMT1-203ENST00000354098 OR7A2PQ8NGA2 310 aa20.7■□□□□ 0.9
SHMT1-203ENST00000354098 EXTL1Q92935 676 aa20.7■□□□□ 0.9
SHMT1-203ENST00000354098 CCDC28BQ9BUN5 200 aa20.7■□□□□ 0.9
SHMT1-203ENST00000354098 SH3BP4Q9P0V3 963 aa20.7■□□□□ 0.9
SHMT1-203ENST00000354098 SCAMP2O15127 329 aaKnown RBP20.69■□□□□ 0.9
SHMT1-203ENST00000354098 CSNK2A2P19784 350 aaPredicted RBP20.69■□□□□ 0.9
SHMT1-203ENST00000354098 SLC26A5P58743 744 aa20.69■□□□□ 0.9
SHMT1-203ENST00000354098 MPEG1Q2M385 716 aa20.69■□□□□ 0.9
SHMT1-203ENST00000354098 BTBD16Q32M84 506 aa20.69■□□□□ 0.9
SHMT1-203ENST00000354098 PPCDCQ96CD2 204 aa20.69■□□□□ 0.9
SHMT1-203ENST00000354098 TEX37Q96LM6 180 aa20.69■□□□□ 0.9
SHMT1-203ENST00000354098 SIKE1Q9BRV8 207 aa20.69■□□□□ 0.9
SHMT1-203ENST00000354098 TMEM120AQ9BXJ8 343 aa20.69■□□□□ 0.9
SHMT1-203ENST00000354098 ATP13A2Q9NQ11 1180 aa20.69■□□□□ 0.9
SHMT1-203ENST00000354098 CLCA3PQ9Y6N3 262 aa20.69■□□□□ 0.9
SHMT1-203ENST00000354098 HRKO00198 91 aa20.68■□□□□ 0.9
SHMT1-203ENST00000354098 PRPS1L1P21108 318 aa20.68■□□□□ 0.9
SHMT1-203ENST00000354098 HPCAL1P37235 193 aa20.68■□□□□ 0.9
SHMT1-203ENST00000354098 RRADP55042 308 aa20.68■□□□□ 0.9
SHMT1-203ENST00000354098 UFM1P61960 85 aa20.68■□□□□ 0.9
SHMT1-203ENST00000354098 ZNF321PQ8N8H1 164 aa20.68■□□□□ 0.9
SHMT1-203ENST00000354098 CLEC1AQ8NC01 280 aa20.68■□□□□ 0.9
SHMT1-203ENST00000354098 SUN3Q8TAQ9 357 aa20.68■□□□□ 0.9
SHMT1-203ENST00000354098 APOBEC4Q8WW27 367 aaKnown RBP20.68■□□□□ 0.9
SHMT1-203ENST00000354098 CIDECQ96AQ7 238 aaPredicted RBP20.68■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms