RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 GALNSP34059 522 aa14.39□□□□□ -0.11
SS18-215ENST00000580642 RORAP35398 523 aa14.39□□□□□ -0.11
SS18-215ENST00000580642 MANFP55145 182 aaKnown RBP14.39□□□□□ -0.11
SS18-215ENST00000580642 EEFSECP57772 596 aaKnown RBP14.39□□□□□ -0.11
SS18-215ENST00000580642 SNRPNP63162 240 aaKnown RBP14.39□□□□□ -0.11
SS18-215ENST00000580642 ABHD18Q0P651 414 aa14.39□□□□□ -0.11
SS18-215ENST00000580642 MPEG1Q2M385 716 aa14.39□□□□□ -0.11
SS18-215ENST00000580642 RUNDC3AQ59EK9 446 aa14.39□□□□□ -0.11
SS18-215ENST00000580642 DCAF12Q5T6F0 453 aa14.39□□□□□ -0.11
SS18-215ENST00000580642 CPZQ66K79 652 aa14.39□□□□□ -0.11
SS18-215ENST00000580642 ANKRD26P1Q6NSI1 321 aa14.39□□□□□ -0.11
SS18-215ENST00000580642 PWWP2BQ6NUJ5 590 aa14.39□□□□□ -0.11
SS18-215ENST00000580642 BHLHB9Q6PI77 547 aa14.39□□□□□ -0.11
SS18-215ENST00000580642 TMEM64Q6YI46 380 aa14.39□□□□□ -0.11
SS18-215ENST00000580642 TMPRSS12Q86WS5 348 aa14.39□□□□□ -0.11
SS18-215ENST00000580642 FBXO27Q8NI29 283 aa14.39□□□□□ -0.11
SS18-215ENST00000580642 SLC45A3Q96JT2 553 aa14.39□□□□□ -0.11
SS18-215ENST00000580642 AMDHD1Q96NU7 426 aa14.39□□□□□ -0.11
SS18-215ENST00000580642 BBS4Q96RK4 519 aa14.39□□□□□ -0.11
SS18-215ENST00000580642 RAD21L1Q9H4I0 556 aa14.39□□□□□ -0.11
SS18-215ENST00000580642 ZNF860A6NHJ4 632 aa14.38□□□□□ -0.11
SS18-215ENST00000580642 EVPLLA8MZ36 301 aa14.38□□□□□ -0.11
SS18-215ENST00000580642 SLC30A4O14863 429 aa14.38□□□□□ -0.11
SS18-215ENST00000580642 CSO75390 466 aaKnown RBP14.38□□□□□ -0.11
SS18-215ENST00000580642 FHP07954 510 aa14.38□□□□□ -0.11
SS18-215ENST00000580642 ABCB1P08183 1280 aaPredicted RBP14.38□□□□□ -0.11
SS18-215ENST00000580642 NQO1P15559 274 aaKnown RBP14.38□□□□□ -0.11
SS18-215ENST00000580642 PORP16435 677 aaPredicted RBP14.38□□□□□ -0.11
SS18-215ENST00000580642 AGXTP21549 392 aa14.38□□□□□ -0.11
SS18-215ENST00000580642 UQCRC2P22695 453 aa14.38□□□□□ -0.11
SS18-215ENST00000580642 MAPK10P53779 464 aa14.38□□□□□ -0.11
SS18-215ENST00000580642 IGLV3-21P80748 117 aaPredicted RBP14.38□□□□□ -0.11
SS18-215ENST00000580642 DCDP81605 110 aaKnown RBP14.38□□□□□ -0.11
SS18-215ENST00000580642 SHC2P98077 582 aa14.38□□□□□ -0.11
SS18-215ENST00000580642 VAC14Q08AM6 782 aa14.38□□□□□ -0.11
SS18-215ENST00000580642 SERTAD2Q14140 314 aa14.38□□□□□ -0.11
SS18-215ENST00000580642 NANOGP8Q6NSW7 305 aa14.38□□□□□ -0.11
SS18-215ENST00000580642 PGM2L1Q6PCE3 622 aa14.38□□□□□ -0.11
SS18-215ENST00000580642 RAB11FIP2Q7L804 512 aa14.38□□□□□ -0.11
SS18-215ENST00000580642 MMP21Q8N119 569 aa14.38□□□□□ -0.11
SS18-215ENST00000580642 LRRC25Q8N386 305 aaPredicted RBP14.38□□□□□ -0.11
SS18-215ENST00000580642 DEFB124Q8NES8 71 aa14.38□□□□□ -0.11
SS18-215ENST00000580642 OR5T3Q8NGG3 340 aa14.38□□□□□ -0.11
SS18-215ENST00000580642 OR4A15Q8NGL6 344 aa14.38□□□□□ -0.11
SS18-215ENST00000580642 WDR36Q8NI36 951 aaKnown RBP14.38□□□□□ -0.11
SS18-215ENST00000580642 NUDT8Q8WV74 236 aa14.38□□□□□ -0.11
SS18-215ENST00000580642 COL26A1Q96A83 441 aa14.38□□□□□ -0.11
SS18-215ENST00000580642 FKBP10Q96AY3 582 aa14.38□□□□□ -0.11
SS18-215ENST00000580642 EXOSC8Q96B26 276 aaKnown RBP14.38□□□□□ -0.11
SS18-215ENST00000580642 CNRIP1Q96F85 164 aaPredicted RBP14.38□□□□□ -0.11
SS18-215ENST00000580642 TAAR9Q96RI9 348 aa14.38□□□□□ -0.11
SS18-215ENST00000580642 THTPAQ9BU02 230 aa14.38□□□□□ -0.11
SS18-215ENST00000580642 SPATA9Q9BWV2 254 aa14.38□□□□□ -0.11
SS18-215ENST00000580642 SLC26A1Q9H2B4 701 aa14.38□□□□□ -0.11
SS18-215ENST00000580642 NANOGQ9H9S0 305 aa14.38□□□□□ -0.11
SS18-215ENST00000580642 C14orf105Q9NVL8 296 aa14.38□□□□□ -0.11
SS18-215ENST00000580642 SLC39A1Q9NY26 324 aa14.38□□□□□ -0.11
SS18-215ENST00000580642 NDOR1Q9UHB4 597 aa14.38□□□□□ -0.11
SS18-215ENST00000580642 L3MBTL1Q9Y468 752 aa14.38□□□□□ -0.11
SS18-215ENST00000580642 LOXL2Q9Y4K0 774 aa14.38□□□□□ -0.11
SS18-215ENST00000580642 EP300Q09472 2414 aaPredicted RBP14.37□□□□□ -0.11
SS18-215ENST00000580642 MYO15AQ9UKN7 3530 aa14.37□□□□□ -0.11
SS18-215ENST00000580642 DMDP11532 3685 aa14.37□□□□□ -0.11
SS18-215ENST00000580642 KRT75O95678 551 aa14.37□□□□□ -0.11
SS18-215ENST00000580642 ATP1B1P05026 303 aa14.37□□□□□ -0.11
SS18-215ENST00000580642 FTH1P19P0C7X4 201 aa14.37□□□□□ -0.11
SS18-215ENST00000580642 SLC35E2P0CK97 266 aa14.37□□□□□ -0.11
SS18-215ENST00000580642 HSD17B1P14061 328 aa14.37□□□□□ -0.11
SS18-215ENST00000580642 CPMP14384 443 aa14.37□□□□□ -0.11
SS18-215ENST00000580642 XKP51811 444 aa14.37□□□□□ -0.11
SS18-215ENST00000580642 HBA1P69905 142 aa14.37□□□□□ -0.11
SS18-215ENST00000580642 OLR1P78380 273 aa14.37□□□□□ -0.11
SS18-215ENST00000580642 DMTNQ08495 405 aa14.37□□□□□ -0.11
SS18-215ENST00000580642 NKAIN1Q4KMZ8 207 aa14.37□□□□□ -0.11
SS18-215ENST00000580642 PIGGQ5H8A4 983 aa14.37□□□□□ -0.11
SS18-215ENST00000580642 ARHGAP40Q5TG30 622 aa14.37□□□□□ -0.11
SS18-215ENST00000580642 TMEM164Q5U3C3 297 aa14.37□□□□□ -0.11
SS18-215ENST00000580642 ZNF385CQ66K41 422 aaPredicted RBP14.37□□□□□ -0.11
SS18-215ENST00000580642 QSOX2Q6ZRP7 698 aa14.37□□□□□ -0.11
SS18-215ENST00000580642 RIPOR1Q6ZS17 1223 aa14.37□□□□□ -0.11
SS18-215ENST00000580642 ZNF621Q6ZSS3 439 aa14.37□□□□□ -0.11
SS18-215ENST00000580642 ANKRD46Q86W74 232 aa14.37□□□□□ -0.11
SS18-215ENST00000580642 SCUBE1Q8IWY4 988 aa14.37□□□□□ -0.11
SS18-215ENST00000580642 SLC15A3Q8IY34 581 aa14.37□□□□□ -0.11
SS18-215ENST00000580642 FBXW8Q8N3Y1 598 aa14.37□□□□□ -0.11
SS18-215ENST00000580642 TNIP2Q8NFZ5 429 aa14.37□□□□□ -0.11
SS18-215ENST00000580642 SFXN5Q8TD22 340 aa14.37□□□□□ -0.11
SS18-215ENST00000580642 CIDECQ96AQ7 238 aaPredicted RBP14.37□□□□□ -0.11
SS18-215ENST00000580642 MIEF2Q96C03 454 aa14.37□□□□□ -0.11
SS18-215ENST00000580642 CLIP3Q96DZ5 547 aa14.37□□□□□ -0.11
SS18-215ENST00000580642 ZNF578Q96N58 590 aaPredicted RBP14.37□□□□□ -0.11
SS18-215ENST00000580642 CDRT15Q96T59 188 aa14.37□□□□□ -0.11
SS18-215ENST00000580642 CSF3RQ99062 836 aa14.37□□□□□ -0.11
SS18-215ENST00000580642 INPP5KQ9BT40 448 aa14.37□□□□□ -0.11
SS18-215ENST00000580642 MUC13Q9H3R2 512 aa14.37□□□□□ -0.11
SS18-215ENST00000580642 PRTFDC1Q9NRG1 225 aa14.37□□□□□ -0.11
SS18-215ENST00000580642 VAPAQ9P0L0 249 aa14.37□□□□□ -0.11
SS18-215ENST00000580642 SLAMF8Q9P0V8 285 aa14.37□□□□□ -0.11
SS18-215ENST00000580642 HCN3Q9P1Z3 774 aa14.37□□□□□ -0.11
SS18-215ENST00000580642 DHCR7Q9UBM7 475 aaKnown RBP14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms