RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 RBM4Q9BWF3 364 aaKnown RBP14.62□□□□□ -0.07
VPS53-218ENST00000575207 PRR14Q9BWN1 585 aa14.62□□□□□ -0.07
VPS53-218ENST00000575207 LIMA1Q9UHB6 759 aaKnown RBP14.62□□□□□ -0.07
VPS53-218ENST00000575207 SYNDIG1LA6NDD5 238 aa14.61□□□□□ -0.07
VPS53-218ENST00000575207 LRATO95237 230 aa14.61□□□□□ -0.07
VPS53-218ENST00000575207 FBXO45P0C2W1 286 aa14.61□□□□□ -0.07
VPS53-218ENST00000575207 RBL1P28749 1068 aa14.61□□□□□ -0.07
VPS53-218ENST00000575207 SRYQ05066 204 aa14.61□□□□□ -0.07
VPS53-218ENST00000575207 FUT7Q11130 342 aa14.61□□□□□ -0.07
VPS53-218ENST00000575207 SEMA3AQ14563 771 aa14.61□□□□□ -0.07
VPS53-218ENST00000575207 WFDC8Q8IUA0 241 aa14.61□□□□□ -0.07
VPS53-218ENST00000575207 KLHDC8BQ8IXV7 354 aa14.61□□□□□ -0.07
VPS53-218ENST00000575207 CA13Q8N1Q1 262 aa14.61□□□□□ -0.07
VPS53-218ENST00000575207 FAM13CQ8NE31 585 aa14.61□□□□□ -0.07
VPS53-218ENST00000575207 OR13J1Q8NGT2 312 aa14.61□□□□□ -0.07
VPS53-218ENST00000575207 OR14A16Q8NHC5 309 aa14.61□□□□□ -0.07
VPS53-218ENST00000575207 UTP15Q8TED0 518 aaKnown RBP14.61□□□□□ -0.07
VPS53-218ENST00000575207 TP53INP1Q96A56 240 aa14.61□□□□□ -0.07
VPS53-218ENST00000575207 HAUS1Q96CS2 278 aa14.61□□□□□ -0.07
VPS53-218ENST00000575207 ZNF845Q96IR2 970 aaPredicted RBP14.61□□□□□ -0.07
VPS53-218ENST00000575207 OR8D2Q9GZM6 311 aa14.61□□□□□ -0.07
VPS53-218ENST00000575207 PRTFDC1Q9NRG1 225 aa14.61□□□□□ -0.07
VPS53-218ENST00000575207 RYDENQ9NUL5 291 aaKnown RBP14.61□□□□□ -0.07
VPS53-218ENST00000575207 TRIM77I1YAP6 450 aa14.6□□□□□ -0.07
VPS53-218ENST00000575207 CLOCKO15516 846 aa14.6□□□□□ -0.07
VPS53-218ENST00000575207 EMC8O43402 210 aa14.6□□□□□ -0.07
VPS53-218ENST00000575207 SNX4O95219 450 aa14.6□□□□□ -0.07
VPS53-218ENST00000575207 CATP04040 527 aaKnown RBP14.6□□□□□ -0.07
VPS53-218ENST00000575207 PYGBP11216 843 aa14.6□□□□□ -0.07
VPS53-218ENST00000575207 IRX1P78414 480 aaPredicted RBP14.6□□□□□ -0.07
VPS53-218ENST00000575207 ENPP6Q6UWR7 440 aa14.6□□□□□ -0.07
VPS53-218ENST00000575207 DEF8Q6ZN54 512 aa14.6□□□□□ -0.07
VPS53-218ENST00000575207 ZNF534Q76KX8 674 aa14.6□□□□□ -0.07
VPS53-218ENST00000575207 FAM83FQ8NEG4 500 aaPredicted RBP14.6□□□□□ -0.07
VPS53-218ENST00000575207 OR4L1Q8NH43 312 aa14.6□□□□□ -0.07
VPS53-218ENST00000575207 PPP1R2P1Q96PQ5 205 aa14.6□□□□□ -0.07
VPS53-218ENST00000575207 P2RY12Q9H244 342 aa14.6□□□□□ -0.07
VPS53-218ENST00000575207 C10orf88Q9H8K7 445 aa14.6□□□□□ -0.07
VPS53-218ENST00000575207 UVRAGQ9P2Y5 699 aa14.6□□□□□ -0.07
VPS53-218ENST00000575207 RNF112Q9ULX5 631 aa14.6□□□□□ -0.07
VPS53-218ENST00000575207 SMIM10L1P0DMW3 83 aa14.59□□□□□ -0.07
VPS53-218ENST00000575207 SERPINB3P29508 390 aa14.59□□□□□ -0.07
VPS53-218ENST00000575207 GCKP35557 465 aa14.59□□□□□ -0.07
VPS53-218ENST00000575207 GRK3P35626 688 aa14.59□□□□□ -0.07
VPS53-218ENST00000575207 CDKN2BP42772 138 aa14.59□□□□□ -0.07
VPS53-218ENST00000575207 TOMM20Q15388 145 aa14.59□□□□□ -0.07
VPS53-218ENST00000575207 FASTKD1Q53R41 847 aaKnown RBP14.59□□□□□ -0.07
VPS53-218ENST00000575207 NCMAPQ5T1S8 102 aa14.59□□□□□ -0.07
VPS53-218ENST00000575207 SBSNQ6UWP8 590 aa14.59□□□□□ -0.07
VPS53-218ENST00000575207 PEG10Q86TG7 708 aaKnown RBP14.59□□□□□ -0.07
VPS53-218ENST00000575207 CCDC50Q8IVM0 306 aa14.59□□□□□ -0.07
VPS53-218ENST00000575207 NT5CQ8TCD5 201 aa14.59□□□□□ -0.07
VPS53-218ENST00000575207 SLC2A12Q8TD20 617 aa14.59□□□□□ -0.07
VPS53-218ENST00000575207 ATL1Q8WXF7 558 aa14.59□□□□□ -0.07
VPS53-218ENST00000575207 SMIM10Q96HG1 83 aa14.59□□□□□ -0.07
VPS53-218ENST00000575207 EIF2B3Q9NR50 452 aaKnown RBP14.59□□□□□ -0.07
VPS53-218ENST00000575207 PIH1D1Q9NWS0 290 aaKnown RBP14.59□□□□□ -0.07
VPS53-218ENST00000575207 VTI1BQ9UEU0 232 aa14.59□□□□□ -0.07
VPS53-218ENST00000575207 TMEFF2Q9UIK5 374 aaPredicted RBP14.59□□□□□ -0.07
VPS53-218ENST00000575207 ZNF148Q9UQR1 794 aa14.59□□□□□ -0.07
VPS53-218ENST00000575207 DLGAP4Q9Y2H0 992 aa14.59□□□□□ -0.07
VPS53-218ENST00000575207 VWC2LB2RUY7 222 aa14.58□□□□□ -0.08
VPS53-218ENST00000575207 PLOD2O00469 737 aa14.58□□□□□ -0.08
VPS53-218ENST00000575207 STK10O94804 968 aaKnown RBP14.58□□□□□ -0.08
VPS53-218ENST00000575207 FESP07332 822 aa14.58□□□□□ -0.08
VPS53-218ENST00000575207 CD3EP07766 207 aa14.58□□□□□ -0.08
VPS53-218ENST00000575207 CSF3P09919 207 aa14.58□□□□□ -0.08
VPS53-218ENST00000575207 SLC13A2Q13183 592 aa14.58□□□□□ -0.08
VPS53-218ENST00000575207 NTRK2Q16620 822 aa14.58□□□□□ -0.08
VPS53-218ENST00000575207 AARS2Q5JTZ9 985 aaKnown RBP14.58□□□□□ -0.08
VPS53-218ENST00000575207 STAC2Q6ZMT1 411 aa14.58□□□□□ -0.08
VPS53-218ENST00000575207 YRDCQ86U90 279 aaKnown RBP14.58□□□□□ -0.08
VPS53-218ENST00000575207 TMEM52Q8NDY8 209 aa14.58□□□□□ -0.08
VPS53-218ENST00000575207 DIO2Q92813 273 aa14.58□□□□□ -0.08
VPS53-218ENST00000575207 OR10A4Q9H209 315 aa14.58□□□□□ -0.08
VPS53-218ENST00000575207 FAIMQ9NVQ4 179 aa14.58□□□□□ -0.08
VPS53-218ENST00000575207 PTBP2Q9UKA9 531 aaKnown RBP14.58□□□□□ -0.08
VPS53-218ENST00000575207 LRRC10BA6NIK2 292 aa14.57□□□□□ -0.08
VPS53-218ENST00000575207 LINC01387J3KSC0 135 aa14.57□□□□□ -0.08
VPS53-218ENST00000575207 NRDCO43847 1150 aa14.57□□□□□ -0.08
VPS53-218ENST00000575207 SYF2O95926 243 aaKnown RBP14.57□□□□□ -0.08
VPS53-218ENST00000575207 IFNA16P05015 189 aa14.57□□□□□ -0.08
VPS53-218ENST00000575207 SERPIND1P05546 499 aa14.57□□□□□ -0.08
VPS53-218ENST00000575207 RBP3P10745 1247 aa14.57□□□□□ -0.08
VPS53-218ENST00000575207 APEHP13798 732 aaKnown RBP14.57□□□□□ -0.08
VPS53-218ENST00000575207 CTNNA2P26232 953 aa14.57□□□□□ -0.08
VPS53-218ENST00000575207 IMPA1P29218 277 aa14.57□□□□□ -0.08
VPS53-218ENST00000575207 LIMS1P48059 325 aa14.57□□□□□ -0.08
VPS53-218ENST00000575207 HNRNPFP52597 415 aaKnown RBP14.57□□□□□ -0.08
VPS53-218ENST00000575207 RAB8AP61006 207 aa14.57□□□□□ -0.08
VPS53-218ENST00000575207 SIRPAP78324 504 aa14.57□□□□□ -0.08
VPS53-218ENST00000575207 CCZ1BP86790 482 aa14.57□□□□□ -0.08
VPS53-218ENST00000575207 CCZ1P86791 482 aaPredicted RBP14.57□□□□□ -0.08
VPS53-218ENST00000575207 RGS1Q08116 209 aa14.57□□□□□ -0.08
VPS53-218ENST00000575207 LGALS3BPQ08380 585 aa14.57□□□□□ -0.08
VPS53-218ENST00000575207 FGFBP1Q14512 234 aa14.57□□□□□ -0.08
VPS53-218ENST00000575207 LRRC38Q5VT99 294 aa14.57□□□□□ -0.08
VPS53-218ENST00000575207 STRA8Q7Z7C7 330 aa14.57□□□□□ -0.08
VPS53-218ENST00000575207 PACS2Q86VP3 889 aa14.57□□□□□ -0.08
VPS53-218ENST00000575207 ZNF721Q8TF20 911 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms