RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 CPPED1Q9BRF8 314 aaPredicted RBP28.82■■■□□ 2.2
CTCF-203ENST00000566078 RBCK1Q9BYM8 510 aa28.82■■■□□ 2.2
CTCF-203ENST00000566078 ACSS1Q9NUB1 689 aaPredicted RBP28.82■■■□□ 2.2
CTCF-203ENST00000566078 TAS2R9Q9NYW1 312 aa28.82■■■□□ 2.2
CTCF-203ENST00000566078 ZNF282Q9UDV7 671 aaPredicted RBP28.82■■■□□ 2.2
CTCF-203ENST00000566078 TMEM184BQ9Y519 407 aaPredicted RBP28.82■■■□□ 2.2
CTCF-203ENST00000566078 PRORSD1PA6NEY8 169 aa28.81■■■□□ 2.2
CTCF-203ENST00000566078 FAM227AF5H4B4 570 aa28.81■■■□□ 2.2
CTCF-203ENST00000566078 C8orf89P0DMQ9 161 aa28.81■■■□□ 2.2
CTCF-203ENST00000566078 ME2P23368 584 aa28.81■■■□□ 2.2
CTCF-203ENST00000566078 HSPB3Q12988 150 aa28.81■■■□□ 2.2
CTCF-203ENST00000566078 SYT16Q17RD7 645 aa28.81■■■□□ 2.2
CTCF-203ENST00000566078 ZNF551Q7Z340 670 aaPredicted RBP28.81■■■□□ 2.2
CTCF-203ENST00000566078 PIP4P1Q86T03 277 aa28.81■■■□□ 2.2
CTCF-203ENST00000566078 PEX11GQ96HA9 241 aa28.81■■■□□ 2.2
CTCF-203ENST00000566078 IKZF5Q9H5V7 419 aa28.81■■■□□ 2.2
CTCF-203ENST00000566078 CLK4Q9HAZ1 481 aaKnown RBP28.81■■■□□ 2.2
CTCF-203ENST00000566078 SRPK3Q9UPE1 567 aa28.81■■■□□ 2.2
CTCF-203ENST00000566078 ZNF780BQ9Y6R6 833 aa28.81■■■□□ 2.2
CTCF-203ENST00000566078 MAU2Q9Y6X3 613 aa28.81■■■□□ 2.2
CTCF-203ENST00000566078 A8MUI8 341 aa28.8■■■□□ 2.2
CTCF-203ENST00000566078 MYO1GB0I1T2 1018 aa28.8■■■□□ 2.2
CTCF-203ENST00000566078 ZCCHC18P0CG32 403 aa28.8■■■□□ 2.2
CTCF-203ENST00000566078 TCN1P20061 433 aaPredicted RBP28.8■■■□□ 2.2
CTCF-203ENST00000566078 NCBP2P52298 156 aaKnown RBP eCLIP28.8■■■□□ 2.27e-8■□□□□ 9.4
CTCF-203ENST00000566078 E2F1Q01094 437 aa28.8■■■□□ 2.2
CTCF-203ENST00000566078 ZNF750Q32MQ0 723 aa28.8■■■□□ 2.2
CTCF-203ENST00000566078 FAM156AQ8NDB6 213 aa28.8■■■□□ 2.2
CTCF-203ENST00000566078 ZFP28Q8NHY6 868 aa28.8■■■□□ 2.2
CTCF-203ENST00000566078 ADAMTS18Q8TE60 1221 aa28.8■■■□□ 2.2
CTCF-203ENST00000566078 PHF12Q96QT6 1004 aa28.8■■■□□ 2.2
CTCF-203ENST00000566078 THUMPD3Q9BV44 507 aaKnown RBP28.8■■■□□ 2.2
CTCF-203ENST00000566078 GMPR2Q9P2T1 348 aaKnown RBP28.8■■■□□ 2.2
CTCF-203ENST00000566078 CD300AQ9UGN4 299 aa28.8■■■□□ 2.2
CTCF-203ENST00000566078 PCNX2A6NKB5 2137 aa28.8■■■□□ 2.2
CTCF-203ENST00000566078 A0A1B0GX78 115 aa28.8■■■□□ 2.2
CTCF-203ENST00000566078 A0A1W2PS29 197 aa28.8■■■□□ 2.2
CTCF-203ENST00000566078 ATXN8OSP0DMR3 200 aa28.8■■■□□ 2.2
CTCF-203ENST00000566078 SOAT1P35610 550 aa28.8■■■□□ 2.2
CTCF-203ENST00000566078 FEN1P39748 380 aaKnown RBP28.8■■■□□ 2.2
CTCF-203ENST00000566078 TMEM126BQ8IUX1 230 aa28.8■■■□□ 2.2
CTCF-203ENST00000566078 OR4K14Q8NGD5 310 aa28.8■■■□□ 2.2
CTCF-203ENST00000566078 AMDHD1Q96NU7 426 aa28.8■■■□□ 2.2
CTCF-203ENST00000566078 SH3GL1Q99961 368 aa28.8■■■□□ 2.2
CTCF-203ENST00000566078 SLC7A5P2Q9GIP4 190 aa28.8■■■□□ 2.2
CTCF-203ENST00000566078 GLIPR2Q9H4G4 154 aa28.8■■■□□ 2.2
CTCF-203ENST00000566078 CDC14AQ9UNH5 594 aa28.8■■■□□ 2.2
CTCF-203ENST00000566078 CSNK2A2P19784 350 aaPredicted RBP28.79■■■□□ 2.2
CTCF-203ENST00000566078 CCKBRP32239 447 aa28.79■■■□□ 2.2
CTCF-203ENST00000566078 OR1D4P47884 311 aa28.79■■■□□ 2.2
CTCF-203ENST00000566078 DUSP2Q05923 314 aa28.79■■■□□ 2.2
CTCF-203ENST00000566078 MLC1Q15049 377 aa28.79■■■□□ 2.2
CTCF-203ENST00000566078 CLEC4FQ8N1N0 589 aa28.79■■■□□ 2.2
CTCF-203ENST00000566078 TRIML2Q8N7C3 387 aa28.79■■■□□ 2.2
CTCF-203ENST00000566078 RNF31Q96EP0 1072 aa28.79■■■□□ 2.2
CTCF-203ENST00000566078 ALG2Q9H553 416 aa28.79■■■□□ 2.2
CTCF-203ENST00000566078 CXorf36Q9H7Y0 433 aa28.79■■■□□ 2.2
CTCF-203ENST00000566078 NEUROD4Q9HD90 331 aa28.79■■■□□ 2.2
CTCF-203ENST00000566078 APMAPQ9HDC9 416 aa28.79■■■□□ 2.2
CTCF-203ENST00000566078 ZNF292O60281 2723 aa28.78■■■□□ 2.2
CTCF-203ENST00000566078 SCRG1O75711 98 aa28.78■■■□□ 2.2
CTCF-203ENST00000566078 MSX2P35548 267 aaPredicted RBP28.78■■■□□ 2.2
CTCF-203ENST00000566078 EEFSECP57772 596 aaKnown RBP28.78■■■□□ 2.2
CTCF-203ENST00000566078 ELF3P78545 371 aaPredicted RBP28.78■■■□□ 2.2
CTCF-203ENST00000566078 INSM1Q01101 510 aaPredicted RBP28.78■■■□□ 2.2
CTCF-203ENST00000566078 LIPEQ05469 1076 aa28.78■■■□□ 2.2
CTCF-203ENST00000566078 CEBPEQ15744 281 aa28.78■■■□□ 2.2
CTCF-203ENST00000566078 C1orf189Q5VU69 101 aa28.78■■■□□ 2.2
CTCF-203ENST00000566078 CYB5D1Q6P9G0 228 aa28.78■■■□□ 2.2
CTCF-203ENST00000566078 PPP1R3BQ86XI6 285 aa28.78■■■□□ 2.2
CTCF-203ENST00000566078 OR4N5Q8IXE1 308 aa28.78■■■□□ 2.2
CTCF-203ENST00000566078 OR51Q1Q8NH59 317 aa28.78■■■□□ 2.2
CTCF-203ENST00000566078 ZDHHC19Q8WVZ1 309 aaPredicted RBP28.78■■■□□ 2.2
CTCF-203ENST00000566078 ZNF681Q96N22 645 aa28.78■■■□□ 2.2
CTCF-203ENST00000566078 SLC35A5Q9BS91 424 aa28.78■■■□□ 2.2
CTCF-203ENST00000566078 TRIM4Q9C037 500 aa28.78■■■□□ 2.2
CTCF-203ENST00000566078 MRPS33Q9Y291 106 aaKnown RBP28.78■■■□□ 2.2
CTCF-203ENST00000566078 SEC16AO15027 2179 aa28.78■■■□□ 2.2
CTCF-203ENST00000566078 CLIC1O00299 241 aa28.77■■■□□ 2.2
CTCF-203ENST00000566078 LDB3O75112 727 aa28.77■■■□□ 2.2
CTCF-203ENST00000566078 TIAF1O95411 115 aa28.77■■■□□ 2.2
CTCF-203ENST00000566078 C1QCP02747 245 aa28.77■■■□□ 2.2
CTCF-203ENST00000566078 FOLH1Q04609 750 aa28.77■■■□□ 2.2
CTCF-203ENST00000566078 C6orf163Q5TEZ5 329 aa28.77■■■□□ 2.2
CTCF-203ENST00000566078 C1orf146Q5VVC0 180 aa28.77■■■□□ 2.2
CTCF-203ENST00000566078 PWWP2BQ6NUJ5 590 aa28.77■■■□□ 2.2
CTCF-203ENST00000566078 NET1Q7Z628 596 aaPredicted RBP28.77■■■□□ 2.2
CTCF-203ENST00000566078 CCDC116Q8IYX3 515 aa28.77■■■□□ 2.2
CTCF-203ENST00000566078 SUN3Q8TAQ9 357 aa28.77■■■□□ 2.2
CTCF-203ENST00000566078 ZFP90Q8TF47 636 aa28.77■■■□□ 2.2
CTCF-203ENST00000566078 TANKQ92844 425 aa28.77■■■□□ 2.2
CTCF-203ENST00000566078 ECSITQ9BQ95 431 aa28.77■■■□□ 2.2
CTCF-203ENST00000566078 TOR4AQ9NXH8 423 aa28.77■■■□□ 2.2
CTCF-203ENST00000566078 SUCOQ9UBS9 1254 aaKnown RBP28.77■■■□□ 2.2
CTCF-203ENST00000566078 POMPQ9Y244 141 aa28.77■■■□□ 2.2
CTCF-203ENST00000566078 SNX8Q9Y5X2 465 aa28.77■■■□□ 2.2
CTCF-203ENST00000566078 PROB1E7EW31 1015 aa28.76■■■□□ 2.2
CTCF-203ENST00000566078 FGF17O60258 216 aa28.76■■■□□ 2.2
CTCF-203ENST00000566078 HSD17B1P14061 328 aa28.76■■■□□ 2.2
CTCF-203ENST00000566078 FBLP22087 321 aaKnown RBP28.76■■■□□ 2.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms