RNA–Protein interactions for RNA: ENST00000553308.1

SYNE2-209, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 557 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-209ENST00000553308 PDLIM5Q96HC4 596 aaKnown RBP8.35□□□□□ -1.07
SYNE2-209ENST00000553308 F2RL3Q96RI0 385 aa8.35□□□□□ -1.07
SYNE2-209ENST00000553308 MAPKAP1Q9BPZ7 522 aa8.35□□□□□ -1.07
SYNE2-209ENST00000553308 ZNF395Q9H8N7 513 aaPredicted RBP8.35□□□□□ -1.07
SYNE2-209ENST00000553308 PLAC1Q9HBJ0 212 aa8.35□□□□□ -1.07
SYNE2-209ENST00000553308 NEUROD4Q9HD90 331 aa8.35□□□□□ -1.07
SYNE2-209ENST00000553308 ACKR4Q9NPB9 350 aa8.35□□□□□ -1.07
SYNE2-209ENST00000553308 LZTFL1Q9NQ48 299 aa8.35□□□□□ -1.07
SYNE2-209ENST00000553308 PRDM7Q9NQW5 492 aa8.35□□□□□ -1.07
SYNE2-209ENST00000553308 COPS7AQ9UBW8 275 aa8.35□□□□□ -1.07
SYNE2-209ENST00000553308 FOXD3Q9UJU5 478 aaPredicted RBP8.35□□□□□ -1.07
SYNE2-209ENST00000553308 VWA7Q9Y334 891 aa8.35□□□□□ -1.07
SYNE2-209ENST00000553308 CHCHD2Q9Y6H1 151 aaPredicted RBP8.35□□□□□ -1.07
SYNE2-209ENST00000553308 FBN3Q75N90 2809 aa8.35□□□□□ -1.07
SYNE2-209ENST00000553308 ANKDD1BA6NHY2 528 aa8.34□□□□□ -1.07
SYNE2-209ENST00000553308 NCF1BA6NI72 391 aaPredicted RBP8.34□□□□□ -1.07
SYNE2-209ENST00000553308 NCF1CA8MVU1 366 aaPredicted RBP8.34□□□□□ -1.07
SYNE2-209ENST00000553308 AHRRA9YTQ3 701 aa8.34□□□□□ -1.07
SYNE2-209ENST00000553308 EEF1E1-BLOC1S5C9J1V9 151 aa8.34□□□□□ -1.07
SYNE2-209ENST00000553308 HRKO00198 91 aa8.34□□□□□ -1.07
SYNE2-209ENST00000553308 RTCAO00442 366 aaKnown RBP8.34□□□□□ -1.07
SYNE2-209ENST00000553308 EEF1E1O43324 174 aaKnown RBP8.34□□□□□ -1.07
SYNE2-209ENST00000553308 FGF17O60258 216 aa8.34□□□□□ -1.07
SYNE2-209ENST00000553308 TTC4O95801 387 aa8.34□□□□□ -1.07
SYNE2-209ENST00000553308 LY6G6DO95868 133 aa8.34□□□□□ -1.07
SYNE2-209ENST00000553308 IL2RAP01589 272 aa8.34□□□□□ -1.07
SYNE2-209ENST00000553308 IGKV3-11P04433 115 aa8.34□□□□□ -1.07
SYNE2-209ENST00000553308 NCF1P14598 390 aaPredicted RBP8.34□□□□□ -1.07
SYNE2-209ENST00000553308 GDF1P27539 372 aa8.34□□□□□ -1.07
SYNE2-209ENST00000553308 GSTM2P28161 218 aa8.34□□□□□ -1.07
SYNE2-209ENST00000553308 TIMP3P35625 211 aa8.34□□□□□ -1.07
SYNE2-209ENST00000553308 CDKL1Q00532 357 aa8.34□□□□□ -1.07
SYNE2-209ENST00000553308 RCN2Q14257 317 aa8.34□□□□□ -1.07
SYNE2-209ENST00000553308 TSNQ15631 228 aaKnown RBP8.34□□□□□ -1.07
SYNE2-209ENST00000553308 FBXO48Q5FWF7 155 aa8.34□□□□□ -1.07
SYNE2-209ENST00000553308 TEDDM1Q5T9Z0 273 aa8.34□□□□□ -1.07
SYNE2-209ENST00000553308 TRMT10BQ6PF06 316 aaKnown RBP8.34□□□□□ -1.07
SYNE2-209ENST00000553308 CCDC137Q6PK04 289 aaKnown RBP8.34□□□□□ -1.07
SYNE2-209ENST00000553308 DGAT2L6Q6ZPD8 337 aa8.34□□□□□ -1.07
SYNE2-209ENST00000553308 MAATS1Q7Z4T9 603 aa8.34□□□□□ -1.07
SYNE2-209ENST00000553308 UBE3DQ7Z6J8 389 aa8.34□□□□□ -1.07
SYNE2-209ENST00000553308 CXorf67Q86X51 503 aaPredicted RBP8.34□□□□□ -1.07
SYNE2-209ENST00000553308 OR4N5Q8IXE1 308 aa8.34□□□□□ -1.07
SYNE2-209ENST00000553308 PPIL6Q8IXY8 311 aa8.34□□□□□ -1.07
SYNE2-209ENST00000553308 KRT78Q8N1N4 520 aa8.34□□□□□ -1.07
SYNE2-209ENST00000553308 CIARTQ8N365 385 aaPredicted RBP8.34□□□□□ -1.07
SYNE2-209ENST00000553308 FAM13CQ8NE31 585 aa8.34□□□□□ -1.07
SYNE2-209ENST00000553308 DOK4Q8TEW6 326 aa8.34□□□□□ -1.07
SYNE2-209ENST00000553308 NUDT8Q8WV74 236 aa8.34□□□□□ -1.07
SYNE2-209ENST00000553308 RHBDF1Q96CC6 855 aa8.34□□□□□ -1.07
SYNE2-209ENST00000553308 SENP5Q96HI0 755 aaPredicted RBP8.34□□□□□ -1.07
SYNE2-209ENST00000553308 MS4A14Q96JA4 679 aa8.34□□□□□ -1.07
SYNE2-209ENST00000553308 TIMP4Q99727 224 aa8.34□□□□□ -1.07
SYNE2-209ENST00000553308 WDR83Q9BRX9 315 aaKnown RBP8.34□□□□□ -1.07
SYNE2-209ENST00000553308 TMEM79Q9BSE2 394 aa8.34□□□□□ -1.07
SYNE2-209ENST00000553308 YIPF4Q9BSR8 244 aa8.34□□□□□ -1.07
SYNE2-209ENST00000553308 EPB41L4BQ9H329 900 aa8.34□□□□□ -1.07
SYNE2-209ENST00000553308 NT5DC2Q9H857 520 aa8.34□□□□□ -1.07
SYNE2-209ENST00000553308 LYRM4Q9HD34 91 aa8.34□□□□□ -1.07
SYNE2-209ENST00000553308 PPANQ9NQ55 473 aaKnown RBP8.34□□□□□ -1.07
SYNE2-209ENST00000553308 BEX4Q9NWD9 120 aaPredicted RBP8.34□□□□□ -1.07
SYNE2-209ENST00000553308 QPCTLQ9NXS2 382 aa8.34□□□□□ -1.07
SYNE2-209ENST00000553308 ZNF629Q9UEG4 869 aaPredicted RBP8.34□□□□□ -1.07
SYNE2-209ENST00000553308 CNOT11Q9UKZ1 510 aaKnown RBP8.34□□□□□ -1.07
SYNE2-209ENST00000553308 CORO1CQ9ULV4 474 aaPredicted RBP8.34□□□□□ -1.07
SYNE2-209ENST00000553308 OARD1Q9Y530 152 aa8.34□□□□□ -1.07
SYNE2-209ENST00000553308 DNHD1Q96M86 4753 aa8.34□□□□□ -1.07
SYNE2-209ENST00000553308 MPDZO75970 2070 aa8.33□□□□□ -1.08
SYNE2-209ENST00000553308 SH3BGRLO75368 114 aa8.33□□□□□ -1.08
SYNE2-209ENST00000553308 HRGP04196 525 aa8.33□□□□□ -1.08
SYNE2-209ENST00000553308 FBXO45P0C2W1 286 aa8.33□□□□□ -1.08
SYNE2-209ENST00000553308 COX7A2P14406 83 aa8.33□□□□□ -1.08
SYNE2-209ENST00000553308 CD22P20273 847 aa8.33□□□□□ -1.08
SYNE2-209ENST00000553308 PCSK6P29122 969 aa8.33□□□□□ -1.08
SYNE2-209ENST00000553308 HPDP32754 393 aaPredicted RBP8.33□□□□□ -1.08
SYNE2-209ENST00000553308 KCNC1P48547 511 aa8.33□□□□□ -1.08
SYNE2-209ENST00000553308 HNMTP50135 292 aa8.33□□□□□ -1.08
SYNE2-209ENST00000553308 SORDQ00796 357 aa8.33□□□□□ -1.08
SYNE2-209ENST00000553308 CYP1B1Q16678 543 aa8.33□□□□□ -1.08
SYNE2-209ENST00000553308 Q5PR19 223 aa8.33□□□□□ -1.08
SYNE2-209ENST00000553308 HP1BP3Q5SSJ5 553 aaPredicted RBP8.33□□□□□ -1.08
SYNE2-209ENST00000553308 DCST1Q5T197 706 aa8.33□□□□□ -1.08
SYNE2-209ENST00000553308 SHEQ5VZ18 495 aa8.33□□□□□ -1.08
SYNE2-209ENST00000553308 NSUN5P2Q63ZY6 315 aa8.33□□□□□ -1.08
SYNE2-209ENST00000553308 FRA10AC1Q70Z53 315 aa8.33□□□□□ -1.08
SYNE2-209ENST00000553308 KIF18BQ86Y91 864 aa8.33□□□□□ -1.08
SYNE2-209ENST00000553308 RASGEF1CQ8N431 466 aa8.33□□□□□ -1.08
SYNE2-209ENST00000553308 ANKRD49Q8WVL7 239 aa8.33□□□□□ -1.08
SYNE2-209ENST00000553308 PPWD1Q96BP3 646 aaKnown RBP8.33□□□□□ -1.08
SYNE2-209ENST00000553308 HSPBAP1Q96EW2 488 aa8.33□□□□□ -1.08
SYNE2-209ENST00000553308 CFAP36Q96G28 342 aa8.33□□□□□ -1.08
SYNE2-209ENST00000553308 COX4I2Q96KJ9 171 aa8.33□□□□□ -1.08
SYNE2-209ENST00000553308 ZNF597Q96LX8 424 aa8.33□□□□□ -1.08
SYNE2-209ENST00000553308 DGAT2Q96PD7 388 aa8.33□□□□□ -1.08
SYNE2-209ENST00000553308 KCNC2Q96PR1 638 aa8.33□□□□□ -1.08
SYNE2-209ENST00000553308 GAL3ST4Q96RP7 486 aa8.33□□□□□ -1.08
SYNE2-209ENST00000553308 TRIB1Q96RU8 372 aa8.33□□□□□ -1.08
SYNE2-209ENST00000553308 DOHHQ9BU89 302 aa8.33□□□□□ -1.08
SYNE2-209ENST00000553308 CNIH4Q9P003 139 aa8.33□□□□□ -1.08
SYNE2-209ENST00000553308 ZNF490Q9ULM2 529 aaPredicted RBP8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms