RNA–Protein interactions for RNA: ENST00000543995.5

TNFRSF1A-216, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 5

Gene TNFRSF1A, Length 1,531 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-216ENST00000543995 IDH3AP50213 366 aa13.59□□□□□ -0.23
TNFRSF1A-216ENST00000543995 OR4D2P58180 307 aa13.59□□□□□ -0.23
TNFRSF1A-216ENST00000543995 ACTN3Q08043 901 aaPredicted RBP13.59□□□□□ -0.23
TNFRSF1A-216ENST00000543995 ATP1A4Q13733 1029 aa13.59□□□□□ -0.23
TNFRSF1A-216ENST00000543995 CRTC2Q53ET0 693 aaPredicted RBP13.59□□□□□ -0.23
TNFRSF1A-216ENST00000543995 SLC48A1Q6P1K1 146 aa13.59□□□□□ -0.23
TNFRSF1A-216ENST00000543995 INO80CQ6PI98 192 aaPredicted RBP13.59□□□□□ -0.23
TNFRSF1A-216ENST00000543995 TMEM205Q6UW68 189 aa13.59□□□□□ -0.23
TNFRSF1A-216ENST00000543995 KIRREL2Q6UWL6 708 aa13.59□□□□□ -0.23
TNFRSF1A-216ENST00000543995 IKBIPQ70UQ0 350 aa13.59□□□□□ -0.23
TNFRSF1A-216ENST00000543995 OR4K14Q8NGD5 310 aa13.59□□□□□ -0.23
TNFRSF1A-216ENST00000543995 DNAJB14Q8TBM8 379 aa13.59□□□□□ -0.23
TNFRSF1A-216ENST00000543995 THAP4Q8WY91 577 aa13.59□□□□□ -0.23
TNFRSF1A-216ENST00000543995 ANKRD9Q96BM1 317 aaPredicted RBP13.59□□□□□ -0.23
TNFRSF1A-216ENST00000543995 EBF4Q9BQW3 602 aa13.59□□□□□ -0.23
TNFRSF1A-216ENST00000543995 MESP1Q9BRJ9 268 aa13.59□□□□□ -0.23
TNFRSF1A-216ENST00000543995 SIKE1Q9BRV8 207 aa13.59□□□□□ -0.23
TNFRSF1A-216ENST00000543995 ALOXE3Q9BYJ1 711 aa13.59□□□□□ -0.23
TNFRSF1A-216ENST00000543995 TCF7L2Q9NQB0 619 aa13.59□□□□□ -0.23
TNFRSF1A-216ENST00000543995 PNO1Q9NRX1 252 aaKnown RBP13.59□□□□□ -0.23
TNFRSF1A-216ENST00000543995 UTS2RQ9UKP6 389 aa13.59□□□□□ -0.23
TNFRSF1A-216ENST00000543995 POLHQ9Y253 713 aa13.59□□□□□ -0.23
TNFRSF1A-216ENST00000543995 CEP295Q9C0D2 2601 aa13.58□□□□□ -0.23
TNFRSF1A-216ENST00000543995 IGKV3D-11A0A0A0MRZ8 115 aa13.58□□□□□ -0.24
TNFRSF1A-216ENST00000543995 IGHV3-20A0A0C4DH32 117 aa13.58□□□□□ -0.24
TNFRSF1A-216ENST00000543995 A0A0G2JND7 137 aa13.58□□□□□ -0.24
TNFRSF1A-216ENST00000543995 TCRBV16S1A1N1A0A5B0 115 aa13.58□□□□□ -0.24
TNFRSF1A-216ENST00000543995 AKAP10O43572 662 aa13.58□□□□□ -0.24
TNFRSF1A-216ENST00000543995 GPR75O95800 540 aa13.58□□□□□ -0.24
TNFRSF1A-216ENST00000543995 G6PDP11413 515 aa13.58□□□□□ -0.24
TNFRSF1A-216ENST00000543995 DDCP20711 480 aa13.58□□□□□ -0.24
TNFRSF1A-216ENST00000543995 DIO3P55073 304 aa13.58□□□□□ -0.24
TNFRSF1A-216ENST00000543995 GNGT1P63211 74 aa13.58□□□□□ -0.24
TNFRSF1A-216ENST00000543995 SERTAD2Q14140 314 aa13.58□□□□□ -0.24
TNFRSF1A-216ENST00000543995 PTGR1Q14914 329 aa13.58□□□□□ -0.24
TNFRSF1A-216ENST00000543995 ST3GAL2Q16842 350 aa13.58□□□□□ -0.24
TNFRSF1A-216ENST00000543995 LSM12Q3MHD2 195 aaKnown RBP13.58□□□□□ -0.24
TNFRSF1A-216ENST00000543995 SFT2D3Q587I9 215 aa13.58□□□□□ -0.24
TNFRSF1A-216ENST00000543995 FAM71E1Q6IPT2 247 aa13.58□□□□□ -0.24
TNFRSF1A-216ENST00000543995 OGFOD2Q6N063 350 aa13.58□□□□□ -0.24
TNFRSF1A-216ENST00000543995 SPATA19Q7Z5L4 167 aa13.58□□□□□ -0.24
TNFRSF1A-216ENST00000543995 CPEB2Q7Z5Q1 589 aaKnown RBP13.58□□□□□ -0.24
TNFRSF1A-216ENST00000543995 C7orf57Q8NEG2 295 aa13.58□□□□□ -0.24
TNFRSF1A-216ENST00000543995 RFWD2Q8NHY2 731 aa13.58□□□□□ -0.24
TNFRSF1A-216ENST00000543995 ACTRT2Q8TDY3 377 aa13.58□□□□□ -0.24
TNFRSF1A-216ENST00000543995 EXOSC8Q96B26 276 aaKnown RBP13.58□□□□□ -0.24
TNFRSF1A-216ENST00000543995 KLHL29Q96CT2 875 aa13.58□□□□□ -0.24
TNFRSF1A-216ENST00000543995 CHMP6Q96FZ7 201 aa13.58□□□□□ -0.24
TNFRSF1A-216ENST00000543995 ZNF317Q96PQ6 595 aaPredicted RBP13.58□□□□□ -0.24
TNFRSF1A-216ENST00000543995 OR52B2Q96RD2 323 aa13.58□□□□□ -0.24
TNFRSF1A-216ENST00000543995 ASIC5Q9NY37 505 aa13.58□□□□□ -0.24
TNFRSF1A-216ENST00000543995 MAN2B2Q9Y2E5 1009 aa13.58□□□□□ -0.24
TNFRSF1A-216ENST00000543995 ZNF780BQ9Y6R6 833 aa13.58□□□□□ -0.24
TNFRSF1A-216ENST00000543995 CELSR3Q9NYQ7 3312 aa13.58□□□□□ -0.24
TNFRSF1A-216ENST00000543995 LOC102723996A0A087X1L8 192 aa13.57□□□□□ -0.24
TNFRSF1A-216ENST00000543995 IGHV1-45A0A0A0MS14 117 aa13.57□□□□□ -0.24
TNFRSF1A-216ENST00000543995 SYNDIG1LA6NDD5 238 aa13.57□□□□□ -0.24
TNFRSF1A-216ENST00000543995 A8MUA0 341 aa13.57□□□□□ -0.24
TNFRSF1A-216ENST00000543995 TGFBR3LH3BV60 316 aa13.57□□□□□ -0.24
TNFRSF1A-216ENST00000543995 TNNI3P19429 210 aa13.57□□□□□ -0.24
TNFRSF1A-216ENST00000543995 LSP1P33241 339 aa13.57□□□□□ -0.24
TNFRSF1A-216ENST00000543995 SF3A3Q12874 501 aaKnown RBP eCLIP13.57□□□□□ -0.243e-6■■■□□ 16.5
TNFRSF1A-216ENST00000543995 BIKQ13323 160 aa13.57□□□□□ -0.24
TNFRSF1A-216ENST00000543995 RPS6KA2Q15349 733 aa13.57□□□□□ -0.24
TNFRSF1A-216ENST00000543995 DEFB109BQ30KR1 87 aa13.57□□□□□ -0.24
TNFRSF1A-216ENST00000543995 FAM180BQ6P0A1 224 aa13.57□□□□□ -0.24
TNFRSF1A-216ENST00000543995 FAM9CQ8IZT9 166 aa13.57□□□□□ -0.24
TNFRSF1A-216ENST00000543995 OR11G2Q8NGC1 345 aa13.57□□□□□ -0.24
TNFRSF1A-216ENST00000543995 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.57□□□□□ -0.243e-15■■■■■ 32.4
TNFRSF1A-216ENST00000543995 RBM18Q96H35 190 aaKnown RBP13.57□□□□□ -0.24
TNFRSF1A-216ENST00000543995 FER1L6-AS2Q96M78 137 aa13.57□□□□□ -0.24
TNFRSF1A-216ENST00000543995 RILPQ96NA2 401 aa13.57□□□□□ -0.24
TNFRSF1A-216ENST00000543995 DGAT2Q96PD7 388 aa13.57□□□□□ -0.24
TNFRSF1A-216ENST00000543995 LPAR4Q99677 370 aa13.57□□□□□ -0.24
TNFRSF1A-216ENST00000543995 GIMAP4Q9NUV9 329 aa13.57□□□□□ -0.24
TNFRSF1A-216ENST00000543995 EHD3Q9NZN3 535 aa13.57□□□□□ -0.24
TNFRSF1A-216ENST00000543995 FBXL4Q9UKA2 621 aa13.57□□□□□ -0.24
TNFRSF1A-216ENST00000543995 G3BP2Q9UN86 482 aaKnown RBP13.57□□□□□ -0.24
TNFRSF1A-216ENST00000543995 NSG1A0A0A6YYJ2 146 aa13.56□□□□□ -0.24
TNFRSF1A-216ENST00000543995 ARGFXA6NJG6 315 aa13.56□□□□□ -0.24
TNFRSF1A-216ENST00000543995 E9PBE3 544 aa13.56□□□□□ -0.24
TNFRSF1A-216ENST00000543995 UBDO15205 165 aa13.56□□□□□ -0.24
TNFRSF1A-216ENST00000543995 OR10H2O60403 315 aa13.56□□□□□ -0.24
TNFRSF1A-216ENST00000543995 KLHL41O60662 606 aa13.56□□□□□ -0.24
TNFRSF1A-216ENST00000543995 ALDOCP09972 364 aaKnown RBP13.56□□□□□ -0.24
TNFRSF1A-216ENST00000543995 COX6A1P12074 109 aa13.56□□□□□ -0.24
TNFRSF1A-216ENST00000543995 COX7A2P14406 83 aa13.56□□□□□ -0.24
TNFRSF1A-216ENST00000543995 HPCAL1P37235 193 aa13.56□□□□□ -0.24
TNFRSF1A-216ENST00000543995 XKP51811 444 aa13.56□□□□□ -0.24
TNFRSF1A-216ENST00000543995 PLIN5Q00G26 463 aa13.56□□□□□ -0.24
TNFRSF1A-216ENST00000543995 ANKRD26P1Q6NSI1 321 aa13.56□□□□□ -0.24
TNFRSF1A-216ENST00000543995 PAPD4Q6PIY7 484 aaKnown RBP13.56□□□□□ -0.24
TNFRSF1A-216ENST00000543995 NDUFAF7Q7L592 441 aa13.56□□□□□ -0.24
TNFRSF1A-216ENST00000543995 R3HCC1LQ7Z5L2 792 aaKnown RBP13.56□□□□□ -0.24
TNFRSF1A-216ENST00000543995 TICAM1Q8IUC6 712 aa13.56□□□□□ -0.24
TNFRSF1A-216ENST00000543995 PPCDCQ96CD2 204 aa13.56□□□□□ -0.24
TNFRSF1A-216ENST00000543995 MARK4Q96L34 752 aa13.56□□□□□ -0.24
TNFRSF1A-216ENST00000543995 CATSPER2Q96P56 530 aa13.56□□□□□ -0.24
TNFRSF1A-216ENST00000543995 ZNF700Q9H0M5 742 aa13.56□□□□□ -0.24
TNFRSF1A-216ENST00000543995 REEP4Q9H6H4 257 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms