RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 TSNQ15631 228 aaKnown RBP16.38■□□□□ 0.21
CLSTN3-214ENST00000542663 ACSF3Q4G176 576 aaPredicted RBP16.38■□□□□ 0.21
CLSTN3-214ENST00000542663 DGAT2L6Q6ZPD8 337 aa16.38■□□□□ 0.21
CLSTN3-214ENST00000542663 UBE3DQ7Z6J8 389 aa16.38■□□□□ 0.21
CLSTN3-214ENST00000542663 KRT78Q8N1N4 520 aa16.38■□□□□ 0.21
CLSTN3-214ENST00000542663 NUBPLQ8TB37 319 aa16.38■□□□□ 0.21
CLSTN3-214ENST00000542663 ANKRD49Q8WVL7 239 aa16.38■□□□□ 0.21
CLSTN3-214ENST00000542663 KIAA1191Q96A73 305 aa16.38■□□□□ 0.21
CLSTN3-214ENST00000542663 SPACA9Q96E40 222 aaPredicted RBP16.38■□□□□ 0.21
CLSTN3-214ENST00000542663 ARSGQ96EG1 525 aa16.38■□□□□ 0.21
CLSTN3-214ENST00000542663 RUNDC3BQ96NL0 473 aa16.38■□□□□ 0.21
CLSTN3-214ENST00000542663 PITHD1Q9GZP4 211 aaPredicted RBP16.38■□□□□ 0.21
CLSTN3-214ENST00000542663 LYRM4Q9HD34 91 aa16.38■□□□□ 0.21
CLSTN3-214ENST00000542663 PPANQ9NQ55 473 aaKnown RBP16.38■□□□□ 0.21
CLSTN3-214ENST00000542663 QPCTLQ9NXS2 382 aa16.38■□□□□ 0.21
CLSTN3-214ENST00000542663 COPS7AQ9UBW8 275 aa16.38■□□□□ 0.21
CLSTN3-214ENST00000542663 BOKQ9UMX3 212 aaPredicted RBP16.38■□□□□ 0.21
CLSTN3-214ENST00000542663 PSAT1Q9Y617 370 aa16.38■□□□□ 0.21
CLSTN3-214ENST00000542663 CHCHD2Q9Y6H1 151 aaPredicted RBP16.38■□□□□ 0.21
CLSTN3-214ENST00000542663 MED12Q93074 2177 aa16.37■□□□□ 0.21
CLSTN3-214ENST00000542663 HRKO00198 91 aa16.37■□□□□ 0.21
CLSTN3-214ENST00000542663 INHBBP09529 407 aa16.37■□□□□ 0.21
CLSTN3-214ENST00000542663 EPXP11678 715 aa16.37■□□□□ 0.21
CLSTN3-214ENST00000542663 CD22P20273 847 aa16.37■□□□□ 0.21
CLSTN3-214ENST00000542663 TIMP3P35625 211 aa16.37■□□□□ 0.21
CLSTN3-214ENST00000542663 IGLV3-21P80748 117 aaPredicted RBP16.37■□□□□ 0.21
CLSTN3-214ENST00000542663 CRYZQ08257 329 aaKnown RBP16.37■□□□□ 0.21
CLSTN3-214ENST00000542663 TMEM198Q66K66 360 aa16.37■□□□□ 0.21
CLSTN3-214ENST00000542663 NKAPQ8N5F7 415 aaKnown RBP16.37■□□□□ 0.21
CLSTN3-214ENST00000542663 WDR83Q9BRX9 315 aaKnown RBP16.37■□□□□ 0.21
CLSTN3-214ENST00000542663 TMEM79Q9BSE2 394 aa16.37■□□□□ 0.21
CLSTN3-214ENST00000542663 NAT9Q9BTE0 207 aa16.37■□□□□ 0.21
CLSTN3-214ENST00000542663 ZNF629Q9UEG4 869 aaPredicted RBP16.37■□□□□ 0.21
CLSTN3-214ENST00000542663 FOXD3Q9UJU5 478 aaPredicted RBP16.37■□□□□ 0.21
CLSTN3-214ENST00000542663 TUBAL3A6NHL2 446 aa16.36■□□□□ 0.21
CLSTN3-214ENST00000542663 NCF1BA6NI72 391 aaPredicted RBP16.36■□□□□ 0.21
CLSTN3-214ENST00000542663 NCF1CA8MVU1 366 aaPredicted RBP16.36■□□□□ 0.21
CLSTN3-214ENST00000542663 TAPBPO15533 448 aa16.36■□□□□ 0.21
CLSTN3-214ENST00000542663 FGF17O60258 216 aa16.36■□□□□ 0.21
CLSTN3-214ENST00000542663 LRATO95237 230 aa16.36■□□□□ 0.21
CLSTN3-214ENST00000542663 NCF1P14598 390 aaPredicted RBP16.36■□□□□ 0.21
CLSTN3-214ENST00000542663 ATP5A1P25705 553 aaKnown RBP16.36■□□□□ 0.21
CLSTN3-214ENST00000542663 HPDP32754 393 aaPredicted RBP16.36■□□□□ 0.21
CLSTN3-214ENST00000542663 KCNC1P48547 511 aa16.36■□□□□ 0.21
CLSTN3-214ENST00000542663 DUSP8Q13202 625 aa16.36■□□□□ 0.21
CLSTN3-214ENST00000542663 HP1BP3Q5SSJ5 553 aaPredicted RBP16.36■□□□□ 0.21
CLSTN3-214ENST00000542663 CHSY3Q70JA7 882 aa16.36■□□□□ 0.21
CLSTN3-214ENST00000542663 MAATS1Q7Z4T9 603 aa16.36■□□□□ 0.21
CLSTN3-214ENST00000542663 GAS2L3Q86XJ1 694 aa16.36■□□□□ 0.21
CLSTN3-214ENST00000542663 LACC1Q8IV20 430 aa16.36■□□□□ 0.21
CLSTN3-214ENST00000542663 OR4N5Q8IXE1 308 aa16.36■□□□□ 0.21
CLSTN3-214ENST00000542663 OR10G3Q8NGC4 313 aa16.36■□□□□ 0.21
CLSTN3-214ENST00000542663 LINC01560Q8TB33 94 aa16.36■□□□□ 0.21
CLSTN3-214ENST00000542663 SLC22A8Q8TCC7 542 aa16.36■□□□□ 0.21
CLSTN3-214ENST00000542663 LRRC46Q96FV0 321 aa16.36■□□□□ 0.21
CLSTN3-214ENST00000542663 CFAP36Q96G28 342 aa16.36■□□□□ 0.21
CLSTN3-214ENST00000542663 SENP5Q96HI0 755 aaPredicted RBP16.36■□□□□ 0.21
CLSTN3-214ENST00000542663 KCNC2Q96PR1 638 aa16.36■□□□□ 0.21
CLSTN3-214ENST00000542663 EHD1Q9H4M9 534 aa16.36■□□□□ 0.21
CLSTN3-214ENST00000542663 GPRC5BQ9NZH0 403 aa16.36■□□□□ 0.21
CLSTN3-214ENST00000542663 MTRF1LQ9UGC7 380 aaKnown RBP16.36■□□□□ 0.21
CLSTN3-214ENST00000542663 CNOT11Q9UKZ1 510 aaKnown RBP16.36■□□□□ 0.21
CLSTN3-214ENST00000542663 HEATR5AQ86XA9 2040 aa16.36■□□□□ 0.21
CLSTN3-214ENST00000542663 A0A1W2PPR1 153 aa16.35■□□□□ 0.21
CLSTN3-214ENST00000542663 AHRRA9YTQ3 701 aa16.35■□□□□ 0.21
CLSTN3-214ENST00000542663 RTCAO00442 366 aaKnown RBP16.35■□□□□ 0.21
CLSTN3-214ENST00000542663 DNALI1O14645 258 aaPredicted RBP16.35■□□□□ 0.21
CLSTN3-214ENST00000542663 ADSLP30566 484 aaPredicted RBP16.35■□□□□ 0.21
CLSTN3-214ENST00000542663 STT3AP46977 705 aa16.35■□□□□ 0.21
CLSTN3-214ENST00000542663 TAS2R39P59534 338 aa16.35■□□□□ 0.21
CLSTN3-214ENST00000542663 DCAF7P61962 342 aa16.35■□□□□ 0.21
CLSTN3-214ENST00000542663 TBL3Q12788 808 aaKnown RBP16.35■□□□□ 0.21
CLSTN3-214ENST00000542663 DOC2AQ14183 400 aa16.35■□□□□ 0.21
CLSTN3-214ENST00000542663 TGFBIQ15582 683 aa16.35■□□□□ 0.21
CLSTN3-214ENST00000542663 FBXO48Q5FWF7 155 aa16.35■□□□□ 0.21
CLSTN3-214ENST00000542663 FBXW10Q5XX13 1052 aa16.35■□□□□ 0.21
CLSTN3-214ENST00000542663 CLEC9AQ6UXN8 241 aa16.35■□□□□ 0.21
CLSTN3-214ENST00000542663 FRA10AC1Q70Z53 315 aa16.35■□□□□ 0.21
CLSTN3-214ENST00000542663 ADAMTSL2Q86TH1 951 aa16.35■□□□□ 0.21
CLSTN3-214ENST00000542663 ZC3HC1Q86WB0 502 aaKnown RBP16.35■□□□□ 0.21
CLSTN3-214ENST00000542663 LIX1Q8N485 282 aa16.35■□□□□ 0.21
CLSTN3-214ENST00000542663 SLC15A4Q8N697 577 aa16.35■□□□□ 0.21
CLSTN3-214ENST00000542663 ACOT4Q8N9L9 421 aa16.35■□□□□ 0.21
CLSTN3-214ENST00000542663 FAM13CQ8NE31 585 aa16.35■□□□□ 0.21
CLSTN3-214ENST00000542663 ESAMQ96AP7 390 aa16.35■□□□□ 0.21
CLSTN3-214ENST00000542663 PPWD1Q96BP3 646 aaKnown RBP16.35■□□□□ 0.21
CLSTN3-214ENST00000542663 WDR34Q96EX3 536 aa16.35■□□□□ 0.21
CLSTN3-214ENST00000542663 JSRP1Q96MG2 331 aaPredicted RBP16.35■□□□□ 0.21
CLSTN3-214ENST00000542663 TIMP4Q99727 224 aa16.35■□□□□ 0.21
CLSTN3-214ENST00000542663 CAPS2Q9BXY5 557 aa16.35■□□□□ 0.21
CLSTN3-214ENST00000542663 CNIH4Q9P003 139 aa16.35■□□□□ 0.21
CLSTN3-214ENST00000542663 CTNNAL1Q9UBT7 734 aa16.35■□□□□ 0.21
CLSTN3-214ENST00000542663 C15orf38-AP3S2A0A0A6YYH1 394 aa16.34■□□□□ 0.21
CLSTN3-214ENST00000542663 FAM95CA0A1B0GW59 222 aa16.34■□□□□ 0.21
CLSTN3-214ENST00000542663 TRIM3O75382 744 aaPredicted RBP16.34■□□□□ 0.21
CLSTN3-214ENST00000542663 SCELO95171 688 aa16.34■□□□□ 0.21
CLSTN3-214ENST00000542663 IL2RAP01589 272 aa16.34■□□□□ 0.21
CLSTN3-214ENST00000542663 C1QAP02745 245 aa16.34■□□□□ 0.21
CLSTN3-214ENST00000542663 FBXO45P0C2W1 286 aa16.34■□□□□ 0.21
CLSTN3-214ENST00000542663 CD53P19397 219 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms