RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 DGCR6Q14129 220 aa14.09□□□□□ -0.15
NUP54-217ENST00000514987 SLC9A5Q14940 896 aa14.09□□□□□ -0.15
NUP54-217ENST00000514987 MLF2Q15773 248 aaPredicted RBP14.09□□□□□ -0.15
NUP54-217ENST00000514987 DUSP7Q16829 419 aa14.09□□□□□ -0.15
NUP54-217ENST00000514987 PPP2R2DQ66LE6 453 aa14.09□□□□□ -0.15
NUP54-217ENST00000514987 TNFAIP8L2Q6P589 184 aaPredicted RBP14.09□□□□□ -0.15
NUP54-217ENST00000514987 AQP11Q8NBQ7 271 aa14.09□□□□□ -0.15
NUP54-217ENST00000514987 DYNC2LI1Q8TCX1 351 aa14.09□□□□□ -0.15
NUP54-217ENST00000514987 UTP15Q8TED0 518 aaKnown RBP14.09□□□□□ -0.15
NUP54-217ENST00000514987 CHPT1Q8WUD6 406 aa14.09□□□□□ -0.15
NUP54-217ENST00000514987 GGHQ92820 318 aa14.09□□□□□ -0.15
NUP54-217ENST00000514987 FAM131CQ96AQ9 280 aa14.09□□□□□ -0.15
NUP54-217ENST00000514987 LGALS12Q96DT0 336 aa14.09□□□□□ -0.15
NUP54-217ENST00000514987 SLC35G5Q96KT7 338 aa14.09□□□□□ -0.15
NUP54-217ENST00000514987 DPH7Q9BTV6 452 aa14.09□□□□□ -0.15
NUP54-217ENST00000514987 SARGQ9BW04 601 aa14.09□□□□□ -0.15
NUP54-217ENST00000514987 TMEM121BQ9BXQ6 578 aaPredicted RBP14.09□□□□□ -0.15
NUP54-217ENST00000514987 MRPS30Q9NP92 439 aaKnown RBP14.09□□□□□ -0.15
NUP54-217ENST00000514987 SLC35C2Q9NQQ7 365 aa14.09□□□□□ -0.15
NUP54-217ENST00000514987 FBXO8Q9NRD0 319 aa14.09□□□□□ -0.15
NUP54-217ENST00000514987 IMP3Q9NV31 184 aaKnown RBP14.09□□□□□ -0.15
NUP54-217ENST00000514987 CLN6Q9NWW5 311 aa14.09□□□□□ -0.15
NUP54-217ENST00000514987 ZNF226Q9NYT6 803 aa14.09□□□□□ -0.15
NUP54-217ENST00000514987 ZFR2Q9UPR6 939 aaKnown RBP14.09□□□□□ -0.15
NUP54-217ENST00000514987 ERGIC3Q9Y282 383 aa14.09□□□□□ -0.15
NUP54-217ENST00000514987 WDR37Q9Y2I8 494 aa14.09□□□□□ -0.15
NUP54-217ENST00000514987 DGKBQ9Y6T7 804 aa14.09□□□□□ -0.15
NUP54-217ENST00000514987 hCG_2014768A0A024R1R8 64 aa14.09□□□□□ -0.15
NUP54-217ENST00000514987 PRR19A6NJB7 356 aa14.09□□□□□ -0.15
NUP54-217ENST00000514987 J3KTA2 159 aa14.09□□□□□ -0.15
NUP54-217ENST00000514987 HMGN4O00479 90 aa14.09□□□□□ -0.15
NUP54-217ENST00000514987 PLRG1O43660 514 aaKnown RBP14.09□□□□□ -0.15
NUP54-217ENST00000514987 SLC28A2O43868 658 aa14.09□□□□□ -0.15
NUP54-217ENST00000514987 NADKO95544 446 aaPredicted RBP14.09□□□□□ -0.15
NUP54-217ENST00000514987 CEACAM5P06731 702 aa14.09□□□□□ -0.15
NUP54-217ENST00000514987 NR4A1P22736 598 aa14.09□□□□□ -0.15
NUP54-217ENST00000514987 GPC1P35052 558 aa14.09□□□□□ -0.15
NUP54-217ENST00000514987 TGFBR2P37173 567 aa14.09□□□□□ -0.15
NUP54-217ENST00000514987 OPRL1P41146 370 aa14.09□□□□□ -0.15
NUP54-217ENST00000514987 WASP42768 502 aa14.09□□□□□ -0.15
NUP54-217ENST00000514987 KHKP50053 298 aa14.09□□□□□ -0.15
NUP54-217ENST00000514987 PUM1Q14671 1186 aaKnown RBP eCLIP14.09□□□□□ -0.15
NUP54-217ENST00000514987 RGS21Q2M5E4 152 aa14.09□□□□□ -0.15
NUP54-217ENST00000514987 UAP1L1Q3KQV9 507 aa14.09□□□□□ -0.15
NUP54-217ENST00000514987 NDUFAF5Q5TEU4 345 aa14.09□□□□□ -0.15
NUP54-217ENST00000514987 FRMPD2BQ6IN97 320 aa14.09□□□□□ -0.15
NUP54-217ENST00000514987 ZNF770Q6IQ21 691 aaPredicted RBP14.09□□□□□ -0.15
NUP54-217ENST00000514987 SDE2Q6IQ49 451 aa14.09□□□□□ -0.15
NUP54-217ENST00000514987 DUS1LQ6P1R4 473 aaKnown RBP14.09□□□□□ -0.15
NUP54-217ENST00000514987 TMEM184AQ6ZMB5 413 aa14.09□□□□□ -0.15
NUP54-217ENST00000514987 PLD3Q8IV08 490 aa14.09□□□□□ -0.15
NUP54-217ENST00000514987 STX19Q8N4C7 294 aa14.09□□□□□ -0.15
NUP54-217ENST00000514987 TMCO5AQ8N6Q1 288 aa14.09□□□□□ -0.15
NUP54-217ENST00000514987 OR9Q2Q8NGE9 314 aa14.09□□□□□ -0.15
NUP54-217ENST00000514987 ASB12Q8WXK4 309 aa14.09□□□□□ -0.15
NUP54-217ENST00000514987 CHFRQ96EP1 664 aa14.09□□□□□ -0.15
NUP54-217ENST00000514987 Q96MT0 163 aa14.09□□□□□ -0.15
NUP54-217ENST00000514987 AMDHD1Q96NU7 426 aa14.09□□□□□ -0.15
NUP54-217ENST00000514987 SLC17A9Q9BYT1 436 aa14.09□□□□□ -0.15
NUP54-217ENST00000514987 UCK2Q9BZX2 261 aa14.09□□□□□ -0.15
NUP54-217ENST00000514987 NMNAT1Q9HAN9 279 aaPredicted RBP14.09□□□□□ -0.15
NUP54-217ENST00000514987 ZDHHC4Q9NPG8 344 aa14.09□□□□□ -0.15
NUP54-217ENST00000514987 TEX10Q9NXF1 929 aaPredicted RBP14.09□□□□□ -0.15
NUP54-217ENST00000514987 NUMA1Q14980 2115 aa14.08□□□□□ -0.16
NUP54-217ENST00000514987 GRXCR1A8MXD5 290 aa14.08□□□□□ -0.16
NUP54-217ENST00000514987 EFCAB9A8MZ26 197 aa14.08□□□□□ -0.16
NUP54-217ENST00000514987 LCMT2O60294 686 aaKnown RBP14.08□□□□□ -0.16
NUP54-217ENST00000514987 MAN1A2O60476 641 aa14.08□□□□□ -0.16
NUP54-217ENST00000514987 CNOT3O75175 753 aaKnown RBP14.08□□□□□ -0.16
NUP54-217ENST00000514987 RECKO95980 971 aa14.08□□□□□ -0.16
NUP54-217ENST00000514987 LCKP06239 509 aa14.08□□□□□ -0.16
NUP54-217ENST00000514987 H1F0P07305 194 aaKnown RBP14.08□□□□□ -0.16
NUP54-217ENST00000514987 HOXC4P09017 264 aaPredicted RBP14.08□□□□□ -0.16
NUP54-217ENST00000514987 OSMP13725 252 aa14.08□□□□□ -0.16
NUP54-217ENST00000514987 CMPK1P30085 196 aa14.08□□□□□ -0.16
NUP54-217ENST00000514987 GDI1P31150 447 aa14.08□□□□□ -0.16
NUP54-217ENST00000514987 CTSKP43235 329 aa14.08□□□□□ -0.16
NUP54-217ENST00000514987 TGM3Q08188 693 aa14.08□□□□□ -0.16
NUP54-217ENST00000514987 TP53BP2Q13625 1128 aa14.08□□□□□ -0.16
NUP54-217ENST00000514987 FGL2Q14314 439 aa14.08□□□□□ -0.16
NUP54-217ENST00000514987 PTGES3Q15185 160 aaKnown RBP14.08□□□□□ -0.16
NUP54-217ENST00000514987 TIGD6Q17RP2 521 aa14.08□□□□□ -0.16
NUP54-217ENST00000514987 ANKDD1AQ495B1 522 aa14.08□□□□□ -0.16
NUP54-217ENST00000514987 TOR1AIP1Q5JTV8 583 aa14.08□□□□□ -0.16
NUP54-217ENST00000514987 DCST1Q5T197 706 aa14.08□□□□□ -0.16
NUP54-217ENST00000514987 PRAMEF8Q5VWM4 474 aa14.08□□□□□ -0.16
NUP54-217ENST00000514987 PRAMEF7Q5VXH5 474 aa14.08□□□□□ -0.16
NUP54-217ENST00000514987 Q6ZPB1 254 aaPredicted RBP14.08□□□□□ -0.16
NUP54-217ENST00000514987 CCDC103Q8IW40 242 aa14.08□□□□□ -0.16
NUP54-217ENST00000514987 FAM46DQ8NEK8 389 aa14.08□□□□□ -0.16
NUP54-217ENST00000514987 GPR32P1Q8NGA4 272 aa14.08□□□□□ -0.16
NUP54-217ENST00000514987 BBS10Q8TAM1 723 aa14.08□□□□□ -0.16
NUP54-217ENST00000514987 GANCQ8TET4 914 aa14.08□□□□□ -0.16
NUP54-217ENST00000514987 NR4A3Q92570 626 aa14.08□□□□□ -0.16
NUP54-217ENST00000514987 ABTB1Q969K4 478 aaPredicted RBP14.08□□□□□ -0.16
NUP54-217ENST00000514987 GTPBP3Q969Y2 492 aaKnown RBP14.08□□□□□ -0.16
NUP54-217ENST00000514987 ZHX1-C8orf76Q96EF9 292 aa14.08□□□□□ -0.16
NUP54-217ENST00000514987 SCARF2Q96GP6 870 aaPredicted RBP14.08□□□□□ -0.16
NUP54-217ENST00000514987 BBS4Q96RK4 519 aa14.08□□□□□ -0.16
NUP54-217ENST00000514987 RHNO1Q9BSD3 238 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms