RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 SLAMF1Q13291 335 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 CUL3Q13618 768 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 SLMAPQ14BN4 828 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 ACAP2Q15057 778 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 HYAL4Q2M3T9 481 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 KBTBD12Q3ZCT8 623 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 RNFT1Q5M7Z0 435 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 TBCELQ5QJ74 424 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 WLSQ5T9L3 541 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 CES4AQ5XG92 561 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 GRHL2Q6ISB3 625 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 CYP20A1Q6UW02 462 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 MEX3BQ6ZN04 569 aaKnown RBP6.56□□□□□ -1.36
VPS41-208ENST00000448833 FAM47EQ6ZV65 393 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 SLC29A4Q7RTT9 530 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 CLNKQ7Z7G1 428 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 CTAGE6Q86UF2 777 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 CD163Q86VB7 1156 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 ST13P4Q8IZP2 240 aaPredicted RBP6.56□□□□□ -1.36
VPS41-208ENST00000448833 SHISA5Q8N114 240 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 ZCCHC7Q8N3Z6 543 aaKnown RBP6.56□□□□□ -1.36
VPS41-208ENST00000448833 FAM109AQ8N4B1 249 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 AMER2Q8N7J2 671 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 PPM1NQ8N819 430 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 NUBPLQ8TB37 319 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 SLC2A12Q8TD20 617 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 ZNF473Q8WTR7 871 aaKnown RBP6.56□□□□□ -1.36
VPS41-208ENST00000448833 UBTD2Q8WUN7 234 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 SENP5Q96HI0 755 aaPredicted RBP6.56□□□□□ -1.36
VPS41-208ENST00000448833 FBXL20Q96IG2 436 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 TRIM8Q9BZR9 551 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 AICDAQ9GZX7 198 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 DEFB127Q9H1M4 99 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 DPH5Q9H2P9 285 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 ALG9Q9H6U8 611 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 LDAHQ9H6V9 325 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 ZDHHC11Q9H8X9 412 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 ACTR8Q9H981 624 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 MCCC2Q9HCC0 563 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 SMYD2Q9NRG4 433 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 LYARQ9NX58 379 aaKnown RBP6.56□□□□□ -1.36
VPS41-208ENST00000448833 QPCTLQ9NXS2 382 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 AHSPQ9NZD4 102 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 B4GALT7Q9UBV7 327 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 BOKQ9UMX3 212 aaPredicted RBP6.56□□□□□ -1.36
VPS41-208ENST00000448833 INTS1Q8N201 2190 aaKnown RBP6.56□□□□□ -1.36
VPS41-208ENST00000448833 ANKRD17O75179 2603 aaKnown RBP6.56□□□□□ -1.36
VPS41-208ENST00000448833 A0A1B0GVC2 190 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 TMEM200CA6NKL6 621 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 C4orf51C9J302 202 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 H0YIV9 168 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 FOXE1O00358 373 aaPredicted RBP6.55□□□□□ -1.36
VPS41-208ENST00000448833 AQP7O14520 342 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 ADAM10O14672 748 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 TP53I11O14683 189 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 RAD51CO43502 376 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 OR10H2O60403 315 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 LDB3O75112 727 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 CDH16O75309 829 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 WISP2O76076 250 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 PDE9AO76083 593 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 GLSO94925 669 aaPredicted RBP6.55□□□□□ -1.36
VPS41-208ENST00000448833 OR6B1O95007 311 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 GPR75O95800 540 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 TGFB1P01137 390 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 IGHG3P01860 377 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 SLC35E2BP0CK96 405 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 GFAPP14136 432 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 ALOX15P16050 662 aaPredicted RBP6.55□□□□□ -1.36
VPS41-208ENST00000448833 ACVR2AP27037 513 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 SOX3P41225 446 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 KIR3DL1P43629 444 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 MAN2A2P49641 1150 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 TMED10P49755 219 aaKnown RBP6.55□□□□□ -1.36
VPS41-208ENST00000448833 ST13P50502 369 aaKnown RBP6.55□□□□□ -1.36
VPS41-208ENST00000448833 HNRNPFP52597 415 aaKnown RBP6.55□□□□□ -1.36
VPS41-208ENST00000448833 NRG3P56975 720 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 GPR85P60893 370 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 RPP38P78345 283 aaKnown RBP6.55□□□□□ -1.36
VPS41-208ENST00000448833 IGLV3-21P80748 117 aaPredicted RBP6.55□□□□□ -1.36
VPS41-208ENST00000448833 HSF1Q00613 529 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 TLE4Q04727 773 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 CKAP4Q07065 602 aaKnown RBP6.55□□□□□ -1.36
VPS41-208ENST00000448833 PMPCAQ10713 525 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 C18orf21Q32NC0 220 aaPredicted RBP6.55□□□□□ -1.36
VPS41-208ENST00000448833 GXYLT1Q4G148 440 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 PIGGQ5H8A4 983 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 C6orf163Q5TEZ5 329 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 TAOK1Q7L7X3 1001 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 PAGE2Q7Z2X7 111 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 VN1R5Q7Z5H4 357 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 CCDC25Q86WR0 208 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 MYLK4Q86YV6 388 aaPredicted RBP6.55□□□□□ -1.36
VPS41-208ENST00000448833 CHERPQ8IWX8 916 aaKnown RBP6.55□□□□□ -1.36
VPS41-208ENST00000448833 ZNF295-AS1Q8N0V1 137 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 TAGAPQ8N103 731 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 SPATA6LQ8N4H0 392 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 TEX9Q8N6V9 391 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 TMEM52Q8NDY8 209 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 OR52N2Q8NGI0 321 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms