RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, human

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPRF-208	ENST00000437607	RUVBL1	Q9Y265	456 aa	Known RBP	11.45	□□□□□ -0.58
PTPRF-208	ENST00000437607	CCL27	Q9Y4X3	112 aa		11.45	□□□□□ -0.58
PTPRF-208	ENST00000437607		A0A088AWK7	358 aa		11.44	□□□□□ -0.58
PTPRF-208	ENST00000437607	ARHGAP10	A1A4S6	786 aa		11.44	□□□□□ -0.58
PTPRF-208	ENST00000437607		H0YGG7	62 aa		11.44	□□□□□ -0.58
PTPRF-208	ENST00000437607	SAP18	O00422	153 aa	Known RBP	11.44	□□□□□ -0.58
PTPRF-208	ENST00000437607	TXNDC9	O14530	226 aa		11.44	□□□□□ -0.58
PTPRF-208	ENST00000437607	SOCS6	O14544	535 aa		11.44	□□□□□ -0.58
PTPRF-208	ENST00000437607	ERI3	O43414	337 aa	Known RBP	11.44	□□□□□ -0.58
PTPRF-208	ENST00000437607	PCDH7	O60245	1069 aa		11.44	□□□□□ -0.58
PTPRF-208	ENST00000437607	ETHE1	O95571	254 aa		11.44	□□□□□ -0.58
PTPRF-208	ENST00000437607	IGHE	P01854	428 aa		11.44	□□□□□ -0.58
PTPRF-208	ENST00000437607	EIF2S1	P05198	315 aa	Known RBP	11.44	□□□□□ -0.58
PTPRF-208	ENST00000437607	ALDOC	P09972	364 aa	Known RBP	11.44	□□□□□ -0.58
PTPRF-208	ENST00000437607	ZNF10	P21506	573 aa	Predicted RBP	11.44	□□□□□ -0.58
PTPRF-208	ENST00000437607	TIA1	P31483	386 aa	Known RBP eCLIP	11.44	□□□□□ -0.58
PTPRF-208	ENST00000437607	ATP4B	P51164	291 aa		11.44	□□□□□ -0.58
PTPRF-208	ENST00000437607	VSX2	P58304	361 aa	Predicted RBP	11.44	□□□□□ -0.58
PTPRF-208	ENST00000437607	ARF3	P61204	181 aa	Predicted RBP	11.44	□□□□□ -0.58
PTPRF-208	ENST00000437607	EMX2	Q04743	252 aa		11.44	□□□□□ -0.58
PTPRF-208	ENST00000437607	RPS6KA2	Q15349	733 aa		11.44	□□□□□ -0.58
PTPRF-208	ENST00000437607	FRMPD2B	Q6IN97	320 aa		11.44	□□□□□ -0.58
PTPRF-208	ENST00000437607	TLDC1	Q6P9B6	456 aa		11.44	□□□□□ -0.58
PTPRF-208	ENST00000437607	IGFL2	Q6UWQ7	119 aa		11.44	□□□□□ -0.58
PTPRF-208	ENST00000437607	COX15	Q7KZN9	410 aa		11.44	□□□□□ -0.58
PTPRF-208	ENST00000437607	ABHD13	Q7L211	337 aa		11.44	□□□□□ -0.58
PTPRF-208	ENST00000437607	TRPM8	Q7Z2W7	1104 aa		11.44	□□□□□ -0.58
PTPRF-208	ENST00000437607	COMMD6	Q7Z4G1	85 aa		11.44	□□□□□ -0.58
PTPRF-208	ENST00000437607	MTDH	Q86UE4	582 aa	Known RBP	11.44	□□□□□ -0.58
PTPRF-208	ENST00000437607	NUDT13	Q86X67	352 aa		11.44	□□□□□ -0.58
PTPRF-208	ENST00000437607	FAM9C	Q8IZT9	166 aa		11.44	□□□□□ -0.58
PTPRF-208	ENST00000437607	ZADH2	Q8N4Q0	377 aa		11.44	□□□□□ -0.58
PTPRF-208	ENST00000437607	TTC29	Q8NA56	475 aa	Predicted RBP	11.44	□□□□□ -0.58
PTPRF-208	ENST00000437607	CDC26	Q8NHZ8	85 aa		11.44	□□□□□ -0.58
PTPRF-208	ENST00000437607	ZCCHC10	Q8TBK6	192 aa		11.44	□□□□□ -0.58
PTPRF-208	ENST00000437607	CREB3L4	Q8TEY5	395 aa		11.44	□□□□□ -0.58
PTPRF-208	ENST00000437607	RGMA	Q96B86	450 aa		11.44	□□□□□ -0.58
PTPRF-208	ENST00000437607	APIP	Q96GX9	242 aa		11.44	□□□□□ -0.58
PTPRF-208	ENST00000437607	QRFPR	Q96P65	431 aa		11.44	□□□□□ -0.58
PTPRF-208	ENST00000437607	OR2A5	Q96R48	311 aa		11.44	□□□□□ -0.58
PTPRF-208	ENST00000437607	EBPL	Q9BY08	206 aa		11.44	□□□□□ -0.58
PTPRF-208	ENST00000437607	SLC6A16	Q9GZN6	736 aa		11.44	□□□□□ -0.58
PTPRF-208	ENST00000437607	TXLNG	Q9NUQ3	528 aa		11.44	□□□□□ -0.58
PTPRF-208	ENST00000437607	ASIC5	Q9NY37	505 aa		11.44	□□□□□ -0.58
PTPRF-208	ENST00000437607	SRPK3	Q9UPE1	567 aa		11.44	□□□□□ -0.58
PTPRF-208	ENST00000437607	ANKRD17	O75179	2603 aa	Known RBP	11.44	□□□□□ -0.58
PTPRF-208	ENST00000437607	PKDREJ	Q9NTG1	2253 aa		11.43	□□□□□ -0.58
PTPRF-208	ENST00000437607	GNG14	A0A1W2PPG7	69 aa		11.43	□□□□□ -0.58
PTPRF-208	ENST00000437607	EBAG9	O00559	213 aa		11.43	□□□□□ -0.58
PTPRF-208	ENST00000437607	PLPP1	O14494	284 aa		11.43	□□□□□ -0.58
PTPRF-208	ENST00000437607	SLC22A2	O15244	555 aa		11.43	□□□□□ -0.58
PTPRF-208	ENST00000437607	P2RX6	O15547	441 aa		11.43	□□□□□ -0.58
PTPRF-208	ENST00000437607	ONECUT2	O95948	504 aa		11.43	□□□□□ -0.58
PTPRF-208	ENST00000437607	CD63	P08962	238 aa		11.43	□□□□□ -0.58
PTPRF-208	ENST00000437607	PRPS2	P11908	318 aa		11.43	□□□□□ -0.58
PTPRF-208	ENST00000437607	HNRNPH1	P31943	449 aa	Known RBP	11.43	□□□□□ -0.58
PTPRF-208	ENST00000437607	PLA2G16	P53816	162 aa		11.43	□□□□□ -0.58
PTPRF-208	ENST00000437607	SKP1	P63208	163 aa		11.43	□□□□□ -0.58
PTPRF-208	ENST00000437607	ZNF763	Q0D2J5	394 aa		11.43	□□□□□ -0.58
PTPRF-208	ENST00000437607	TBL3	Q12788	808 aa	Known RBP	11.43	□□□□□ -0.58
PTPRF-208	ENST00000437607	GTF3C1	Q12789	2109 aa		11.43	□□□□□ -0.58
PTPRF-208	ENST00000437607	AIMP2	Q13155	320 aa	Known RBP	11.43	□□□□□ -0.58
PTPRF-208	ENST00000437607	ELOA	Q14241	798 aa	Known RBP	11.43	□□□□□ -0.58
PTPRF-208	ENST00000437607	NKG7	Q16617	165 aa		11.43	□□□□□ -0.58
PTPRF-208	ENST00000437607	NDUFA9	Q16795	377 aa		11.43	□□□□□ -0.58
PTPRF-208	ENST00000437607	TCTE1	Q5JU00	501 aa		11.43	□□□□□ -0.58
PTPRF-208	ENST00000437607	DEPDC1	Q5TB30	811 aa		11.43	□□□□□ -0.58
PTPRF-208	ENST00000437607	IL23R	Q5VWK5	629 aa		11.43	□□□□□ -0.58
PTPRF-208	ENST00000437607	CYP20A1	Q6UW02	462 aa		11.43	□□□□□ -0.58
PTPRF-208	ENST00000437607	CLNK	Q7Z7G1	428 aa		11.43	□□□□□ -0.58
PTPRF-208	ENST00000437607	MCAT	Q8IVS2	390 aa	Known RBP	11.43	□□□□□ -0.58
PTPRF-208	ENST00000437607	MIER2	Q8N344	545 aa		11.43	□□□□□ -0.58
PTPRF-208	ENST00000437607	METTL4	Q8N3J2	472 aa		11.43	□□□□□ -0.58
PTPRF-208	ENST00000437607	LIX1	Q8N485	282 aa		11.43	□□□□□ -0.58
PTPRF-208	ENST00000437607	OR2L5	Q8NG80	312 aa		11.43	□□□□□ -0.58
PTPRF-208	ENST00000437607	ZDHHC19	Q8WVZ1	309 aa	Predicted RBP	11.43	□□□□□ -0.58
PTPRF-208	ENST00000437607	TM9SF4	Q92544	642 aa		11.43	□□□□□ -0.58
PTPRF-208	ENST00000437607	KCNC2	Q96PR1	638 aa		11.43	□□□□□ -0.58
PTPRF-208	ENST00000437607	F2RL3	Q96RI0	385 aa		11.43	□□□□□ -0.58
PTPRF-208	ENST00000437607	ZBTB18	Q99592	522 aa		11.43	□□□□□ -0.58
PTPRF-208	ENST00000437607	SPSB2	Q99619	263 aa		11.43	□□□□□ -0.58
PTPRF-208	ENST00000437607	WDR77	Q9BQA1	342 aa	Predicted RBP	11.43	□□□□□ -0.58
PTPRF-208	ENST00000437607	MESP1	Q9BRJ9	268 aa		11.43	□□□□□ -0.58
PTPRF-208	ENST00000437607	ROGDI	Q9GZN7	287 aa		11.43	□□□□□ -0.58
PTPRF-208	ENST00000437607	MYLK2	Q9H1R3	596 aa		11.43	□□□□□ -0.58
PTPRF-208	ENST00000437607	SAR1A	Q9NR31	198 aa		11.43	□□□□□ -0.58
PTPRF-208	ENST00000437607	ARMCX1	Q9P291	453 aa		11.43	□□□□□ -0.58
PTPRF-208	ENST00000437607	FBXL4	Q9UKA2	621 aa		11.43	□□□□□ -0.58
PTPRF-208	ENST00000437607	HS3ST3B1	Q9Y662	390 aa		11.43	□□□□□ -0.58
PTPRF-208	ENST00000437607	NCOA6	Q14686	2063 aa	Predicted RBP	11.43	□□□□□ -0.58
PTPRF-208	ENST00000437607	SCN3A	Q9NY46	2000 aa		11.43	□□□□□ -0.58
PTPRF-208	ENST00000437607	CACNA1C	Q13936	2221 aa		11.43	□□□□□ -0.58
PTPRF-208	ENST00000437607	LOC105369274	A0A096LPK9	316 aa		11.42	□□□□□ -0.58
PTPRF-208	ENST00000437607	LOC102723532	A0A0G2JNH3	316 aa		11.42	□□□□□ -0.58
PTPRF-208	ENST00000437607	LRIT2	A6NDA9	550 aa		11.42	□□□□□ -0.58
PTPRF-208	ENST00000437607	SRPX2	O60687	465 aa	Predicted RBP	11.42	□□□□□ -0.58
PTPRF-208	ENST00000437607	ZNF888	P0CJ79	500 aa	Predicted RBP	11.42	□□□□□ -0.58
PTPRF-208	ENST00000437607	PCSK2	P16519	638 aa		11.42	□□□□□ -0.58
PTPRF-208	ENST00000437607	SDC1	P18827	310 aa		11.42	□□□□□ -0.58
PTPRF-208	ENST00000437607	ALAS2	P22557	587 aa		11.42	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 44 ms