RNA–Protein interactions for RNA: ENST00000409025.5

USP39-202, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5 BASIC

Gene USP39, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-202ENST00000409025 TAMM41Q96BW9 452 aa17.94■□□□□ 0.46
USP39-202ENST00000409025 SERINC2Q96SA4 455 aa17.94■□□□□ 0.46
USP39-202ENST00000409025 MRPS26Q9BYN8 205 aaKnown RBP17.94■□□□□ 0.46
USP39-202ENST00000409025 MIR1-1HGQ9H1L0 117 aa17.94■□□□□ 0.46
USP39-202ENST00000409025 A4GALTQ9NPC4 353 aa17.94■□□□□ 0.46
USP39-202ENST00000409025 VNN3Q9NY84 501 aa17.94■□□□□ 0.46
USP39-202ENST00000409025 CES1P1Q9UKY3 287 aa17.94■□□□□ 0.46
USP39-202ENST00000409025 GOLGA4Q13439 2230 aaKnown RBP17.93■□□□□ 0.46
USP39-202ENST00000409025 TMEM229AB2RXF0 380 aa17.93■□□□□ 0.46
USP39-202ENST00000409025 SMIM10L1P0DMW3 83 aa17.93■□□□□ 0.46
USP39-202ENST00000409025 CSNK2A2P19784 350 aaPredicted RBP17.93■□□□□ 0.46
USP39-202ENST00000409025 ZNF10P21506 573 aaPredicted RBP17.93■□□□□ 0.46
USP39-202ENST00000409025 DNAJA1P31689 397 aaKnown RBP17.93■□□□□ 0.46
USP39-202ENST00000409025 ITGA1P56199 1179 aa17.93■□□□□ 0.46
USP39-202ENST00000409025 PCBP3P57721 371 aaKnown RBP17.93■□□□□ 0.46
USP39-202ENST00000409025 ZP2Q05996 745 aa17.93■□□□□ 0.46
USP39-202ENST00000409025 IFI44LQ53G44 452 aa17.93■□□□□ 0.46
USP39-202ENST00000409025 ABHD13Q7L211 337 aa17.93■□□□□ 0.46
USP39-202ENST00000409025 DGLUCYQ7Z3D6 616 aa17.93■□□□□ 0.46
USP39-202ENST00000409025 ZNF655Q8N720 491 aaPredicted RBP17.93■□□□□ 0.46
USP39-202ENST00000409025 SPPL2AQ8TCT8 520 aa17.93■□□□□ 0.46
USP39-202ENST00000409025 CLDN23Q96B33 292 aa17.93■□□□□ 0.46
USP39-202ENST00000409025 RMND5BQ96G75 393 aaPredicted RBP17.93■□□□□ 0.46
USP39-202ENST00000409025 SMIM10Q96HG1 83 aa17.93■□□□□ 0.46
USP39-202ENST00000409025 SPACA7Q96KW9 195 aa17.93■□□□□ 0.46
USP39-202ENST00000409025 C7orf34Q96L11 122 aa17.93■□□□□ 0.46
USP39-202ENST00000409025 PHF11Q9UIL8 331 aa17.93■□□□□ 0.46
USP39-202ENST00000409025 PSME2Q9UL46 239 aa17.93■□□□□ 0.46
USP39-202ENST00000409025 DOLKQ9UPQ8 538 aa17.93■□□□□ 0.46
USP39-202ENST00000409025 PADI2Q9Y2J8 665 aa17.93■□□□□ 0.46
USP39-202ENST00000409025 LOC105369274A0A096LPK9 316 aa17.92■□□□□ 0.46
USP39-202ENST00000409025 LOC102723532A0A0G2JNH3 316 aa17.92■□□□□ 0.46
USP39-202ENST00000409025 H0YGG7 62 aa17.92■□□□□ 0.46
USP39-202ENST00000409025 H3BNH8 94 aa17.92■□□□□ 0.46
USP39-202ENST00000409025 B4GALT2O60909 372 aa17.92■□□□□ 0.46
USP39-202ENST00000409025 DIRAS1O95057 198 aa17.92■□□□□ 0.46
USP39-202ENST00000409025 LINGO3P0C6S8 592 aa17.92■□□□□ 0.46
USP39-202ENST00000409025 NR2F6P10588 404 aa17.92■□□□□ 0.46
USP39-202ENST00000409025 NELFEP18615 380 aaKnown RBP17.92■□□□□ 0.46
USP39-202ENST00000409025 ARF3P61204 181 aaPredicted RBP17.92■□□□□ 0.46
USP39-202ENST00000409025 FRMPD2BQ6IN97 320 aa17.92■□□□□ 0.46
USP39-202ENST00000409025 USP51Q70EK9 711 aa17.92■□□□□ 0.46
USP39-202ENST00000409025 RNF44Q7L0R7 432 aa17.92■□□□□ 0.46
USP39-202ENST00000409025 SZRD1Q7Z422 152 aa17.92■□□□□ 0.46
USP39-202ENST00000409025 OR4N4Q8N0Y3 316 aa17.92■□□□□ 0.46
USP39-202ENST00000409025 ARL10Q8N8L6 244 aa17.92■□□□□ 0.46
USP39-202ENST00000409025 PJA1Q8NG27 643 aa17.92■□□□□ 0.46
USP39-202ENST00000409025 LMX1AQ8TE12 382 aa17.92■□□□□ 0.46
USP39-202ENST00000409025 RSC1A1Q92681 617 aa17.92■□□□□ 0.46
USP39-202ENST00000409025 CNRIP1Q96F85 164 aaPredicted RBP17.92■□□□□ 0.46
USP39-202ENST00000409025 SLC35G5Q96KT7 338 aa17.92■□□□□ 0.46
USP39-202ENST00000409025 SOX17Q9H6I2 414 aaPredicted RBP17.92■□□□□ 0.46
USP39-202ENST00000409025 REEP1Q9H902 201 aa17.92■□□□□ 0.46
USP39-202ENST00000409025 THUMPD1Q9NXG2 353 aaKnown RBP17.92■□□□□ 0.46
USP39-202ENST00000409025 ZSCAN9O15535 394 aaPredicted RBP17.92■□□□□ 0.46
USP39-202ENST00000409025 B3GALT2O43825 422 aa17.92■□□□□ 0.46
USP39-202ENST00000409025 HS6ST1O60243 411 aa17.92■□□□□ 0.46
USP39-202ENST00000409025 DPM1O60762 260 aa17.92■□□□□ 0.46
USP39-202ENST00000409025 CLIC3O95833 236 aa17.92■□□□□ 0.46
USP39-202ENST00000409025 CLPTM1O96005 669 aa17.92■□□□□ 0.46
USP39-202ENST00000409025 TYRP1P17643 537 aa17.92■□□□□ 0.46
USP39-202ENST00000409025 FPR1P21462 350 aa17.92■□□□□ 0.46
USP39-202ENST00000409025 PRKACGP22612 351 aa17.92■□□□□ 0.46
USP39-202ENST00000409025 BUD31P41223 144 aaPredicted RBP17.92■□□□□ 0.46
USP39-202ENST00000409025 BHLHB9Q6PI77 547 aa17.92■□□□□ 0.46
USP39-202ENST00000409025 TTC33Q6PID6 262 aaPredicted RBP17.92■□□□□ 0.46
USP39-202ENST00000409025 SLC36A4Q6YBV0 504 aa17.92■□□□□ 0.46
USP39-202ENST00000409025 TMEM64Q6YI46 380 aa17.92■□□□□ 0.46
USP39-202ENST00000409025 CCDC116Q8IYX3 515 aa17.92■□□□□ 0.46
USP39-202ENST00000409025 SFXN5Q8TD22 340 aa17.92■□□□□ 0.46
USP39-202ENST00000409025 NRBF2Q96F24 287 aa17.92■□□□□ 0.46
USP39-202ENST00000409025 HSPA12BQ96MM6 686 aa17.92■□□□□ 0.46
USP39-202ENST00000409025 GABARAPL1Q9H0R8 117 aa17.92■□□□□ 0.46
USP39-202ENST00000409025 TOR3AQ9H497 397 aa17.92■□□□□ 0.46
USP39-202ENST00000409025 RUBCNLQ9H714 662 aa17.92■□□□□ 0.46
USP39-202ENST00000409025 ZCCHC3Q9NUD5 404 aaKnown RBP17.92■□□□□ 0.46
USP39-202ENST00000409025 ORC6Q9Y5N6 252 aa17.92■□□□□ 0.46
USP39-202ENST00000409025 ZNF780BQ9Y6R6 833 aa17.92■□□□□ 0.46
USP39-202ENST00000409025 MYOCOSA0A1B0GUC4 107 aa17.91■□□□□ 0.46
USP39-202ENST00000409025 TMEM247A6NEH6 219 aa17.91■□□□□ 0.46
USP39-202ENST00000409025 PRAMEF10O60809 474 aa17.91■□□□□ 0.46
USP39-202ENST00000409025 EIF2S1P05198 315 aaKnown RBP17.91■□□□□ 0.46
USP39-202ENST00000409025 BCHEP06276 602 aa17.91■□□□□ 0.46
USP39-202ENST00000409025 CPN2P22792 545 aa17.91■□□□□ 0.46
USP39-202ENST00000409025 MPIP34949 423 aa17.91■□□□□ 0.46
USP39-202ENST00000409025 FEN1P39748 380 aaKnown RBP17.91■□□□□ 0.46
USP39-202ENST00000409025 MAZP56270 477 aaKnown RBP17.91■□□□□ 0.46
USP39-202ENST00000409025 RFX4Q33E94 735 aa17.91■□□□□ 0.46
USP39-202ENST00000409025 IQCCQ4KMZ1 466 aa17.91■□□□□ 0.46
USP39-202ENST00000409025 DEFB134Q4QY38 66 aa17.91■□□□□ 0.46
USP39-202ENST00000409025 MANEAQ5SRI9 462 aa17.91■□□□□ 0.46
USP39-202ENST00000409025 RNF220Q5VTB9 566 aa17.91■□□□□ 0.46
USP39-202ENST00000409025 TTC23Q5W5X9 447 aa17.91■□□□□ 0.46
USP39-202ENST00000409025 ZNF555Q8NEP9 628 aa17.91■□□□□ 0.46
USP39-202ENST00000409025 SUN3Q8TAQ9 357 aa17.91■□□□□ 0.46
USP39-202ENST00000409025 SLC38A5Q8WUX1 472 aa17.91■□□□□ 0.46
USP39-202ENST00000409025 MOAP1Q96BY2 351 aa17.91■□□□□ 0.46
USP39-202ENST00000409025 FAM192AQ9GZU8 254 aa17.91■□□□□ 0.46
USP39-202ENST00000409025 CLK4Q9HAZ1 481 aaKnown RBP17.91■□□□□ 0.46
USP39-202ENST00000409025 C3orf18Q9UK00 162 aa17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms