RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 FAM47EQ6ZV65 393 aa5.63□□□□□ -1.51
VRK3-220ENST00000600259 Q71RC1 249 aaPredicted RBP5.63□□□□□ -1.51
VRK3-220ENST00000600259 WDR53Q7Z5U6 358 aaPredicted RBP5.63□□□□□ -1.51
VRK3-220ENST00000600259 CLNKQ7Z7G1 428 aa5.63□□□□□ -1.51
VRK3-220ENST00000600259 TMPRSS11BQ86T26 416 aa5.63□□□□□ -1.51
VRK3-220ENST00000600259 BIVMQ86UB2 503 aa5.63□□□□□ -1.51
VRK3-220ENST00000600259 GAS2L3Q86XJ1 694 aa5.63□□□□□ -1.51
VRK3-220ENST00000600259 RASGEF1CQ8N431 466 aa5.63□□□□□ -1.51
VRK3-220ENST00000600259 FAM47BQ8NA70 645 aa5.63□□□□□ -1.51
VRK3-220ENST00000600259 OR2L5Q8NG80 312 aa5.63□□□□□ -1.51
VRK3-220ENST00000600259 SLC2A12Q8TD20 617 aa5.63□□□□□ -1.51
VRK3-220ENST00000600259 PAQR8Q8TEZ7 354 aa5.63□□□□□ -1.51
VRK3-220ENST00000600259 DAZLQ92904 295 aaKnown RBP5.63□□□□□ -1.51
VRK3-220ENST00000600259 RNASE6Q93091 150 aaKnown RBP5.63□□□□□ -1.51
VRK3-220ENST00000600259 MAGOHBQ96A72 148 aaKnown RBP5.63□□□□□ -1.51
VRK3-220ENST00000600259 SARAFQ96BY9 339 aa5.63□□□□□ -1.51
VRK3-220ENST00000600259 MDFIQ99750 246 aa5.63□□□□□ -1.51
VRK3-220ENST00000600259 CCDC77Q9BR77 488 aa5.63□□□□□ -1.51
VRK3-220ENST00000600259 WDR83Q9BRX9 315 aaKnown RBP5.63□□□□□ -1.51
VRK3-220ENST00000600259 TRIM54Q9BYV2 358 aa5.63□□□□□ -1.51
VRK3-220ENST00000600259 SACM1LQ9NTJ5 587 aa5.63□□□□□ -1.51
VRK3-220ENST00000600259 JKAMPQ9P055 326 aa5.63□□□□□ -1.51
VRK3-220ENST00000600259 B4GALT7Q9UBV7 327 aa5.63□□□□□ -1.51
VRK3-220ENST00000600259 MAD1L1Q9Y6D9 718 aa5.63□□□□□ -1.51
VRK3-220ENST00000600259 KCNE2Q9Y6J6 123 aa5.63□□□□□ -1.51
VRK3-220ENST00000600259 CLCA3PQ9Y6N3 262 aa5.63□□□□□ -1.51
VRK3-220ENST00000600259 SEC23IPQ9Y6Y8 1000 aaKnown RBP5.63□□□□□ -1.51
VRK3-220ENST00000600259 EML6Q6ZMW3 1958 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 HSPB2A8KAH6 182 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 KIAA1324LA8MWY0 1029 aaPredicted RBP5.62□□□□□ -1.51
VRK3-220ENST00000600259 AHRRA9YTQ3 701 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 FAM47E-STBD1D6RA91 191 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 HRKO00198 91 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 B3GALT2O43825 422 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 LDB3O75112 727 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 TRIM3O75382 744 aaPredicted RBP5.62□□□□□ -1.51
VRK3-220ENST00000600259 WISP3O95389 354 aaPredicted RBP5.62□□□□□ -1.51
VRK3-220ENST00000600259 TTC4O95801 387 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 C1QAP02745 245 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 RAF1P04049 648 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 IFNA16P05015 189 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 DRD2P14416 443 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 HOXB1P14653 301 aaPredicted RBP5.62□□□□□ -1.51
VRK3-220ENST00000600259 PGAM1P18669 254 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 EPORP19235 508 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 CD22P20273 847 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 CERS1P27544 350 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 UQCRC1P31930 480 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 TIMP3P35625 211 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 GGT5P36269 586 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 PEX19P40855 299 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 ASCL1P50553 236 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 ZNF136P52737 540 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 DGKQP52824 942 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 PLA2G16P53816 162 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 MTTPP55157 894 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 WNT3P56703 355 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 ASPHQ12797 758 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 E2F2Q14209 437 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 SLBPQ14493 270 aaKnown RBP eCLIP5.62□□□□□ -1.51
VRK3-220ENST00000600259 EFTUD2Q15029 972 aaKnown RBP eCLIP5.62□□□□□ -1.51
VRK3-220ENST00000600259 HSPB2Q16082 182 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 SPANXN3Q5MJ09 141 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 FNDC7Q5VTL7 733 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 SLC22A10Q63ZE4 541 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 TMEM198Q66K66 360 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 TRMT10BQ6PF06 316 aaKnown RBP5.62□□□□□ -1.51
VRK3-220ENST00000600259 OPN5Q6U736 354 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 ZNF793Q6ZN11 406 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 CHSY3Q70JA7 882 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 CXorf67Q86X51 503 aaPredicted RBP5.62□□□□□ -1.51
VRK3-220ENST00000600259 C9orf40Q8IXQ3 194 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 TNIP2Q8NFZ5 429 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 TTLQ8NG68 377 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 OR5L2Q8NGL0 311 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 OR14A16Q8NHC5 309 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 GOT1L1Q8NHS2 421 aaPredicted RBP5.62□□□□□ -1.51
VRK3-220ENST00000600259 NEIL3Q8TAT5 605 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 NUBPLQ8TB37 319 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 ANKRD49Q8WVL7 239 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 RHBDF1Q96CC6 855 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 WDR34Q96EX3 536 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 RMND5BQ96G75 393 aaPredicted RBP5.62□□□□□ -1.51
VRK3-220ENST00000600259 SENP5Q96HI0 755 aaPredicted RBP5.62□□□□□ -1.51
VRK3-220ENST00000600259 MS4A14Q96JA4 679 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 FAR2Q96K12 515 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 C18orf12Q96KH6 178 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 CAPZA3Q96KX2 299 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 F2RL3Q96RI0 385 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 SERINC2Q96SA4 455 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 TIMP4Q99727 224 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 MAPKAP1Q9BPZ7 522 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 MCMBPQ9BTE3 642 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 OR8D2Q9GZM6 311 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 REXO4Q9GZR2 422 aaKnown RBP5.62□□□□□ -1.51
VRK3-220ENST00000600259 SLC6A15Q9H2J7 730 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 EPB41L4BQ9H329 900 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 ZNF703Q9H7S9 590 aaPredicted RBP5.62□□□□□ -1.51
VRK3-220ENST00000600259 LYRM4Q9HD34 91 aa5.62□□□□□ -1.51
VRK3-220ENST00000600259 ZFP64Q9NPA5 681 aa5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms