RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 TMEM45AQ9NWC5 275 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 TLR6Q9Y2C9 796 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 DLGAP4Q9Y2H0 992 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 A0A1B0GVC2 190 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 MTMR11A4FU01 709 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 A6NIN4 97 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 POM121CA8CG34 1229 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 ZNF670-ZNF695F2Z2N8 137 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 MANBAO00462 879 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 ENTPD6O75354 484 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 RAF1P04049 648 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 LPOP22079 712 aaPredicted RBP9.16□□□□□ -0.94
CCDC40-212ENST00000574799 F8A1P23610 371 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 CHI3L1P36222 383 aaPredicted RBP9.16□□□□□ -0.94
CCDC40-212ENST00000574799 PPP3R1P63098 170 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 BCL2L1Q07817 233 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 LGALS3BPQ08380 585 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 ACSM2AQ08AH3 577 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 TNK1Q13470 666 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 EXOSC2Q13868 293 aaKnown RBP9.16□□□□□ -0.94
CCDC40-212ENST00000574799 HSD17B12Q53GQ0 312 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 KLHL22Q53GT1 634 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 ACSM2BQ68CK6 577 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 TMEM65Q6PI78 240 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 ZNF782Q6ZMW2 699 aaPredicted RBP9.16□□□□□ -0.94
CCDC40-212ENST00000574799 CLECL1Q8IZS7 167 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 UXS1Q8NBZ7 420 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 PITX2Q99697 317 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 BARHL1Q9BZE3 327 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 CIPCQ9C0C6 399 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 ZYG11BQ9C0D3 744 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 SLC28A3Q9HAS3 691 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 PDFQ9HBH1 243 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 IFT46Q9NQC8 304 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 KLHL1Q9NR64 748 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 PRG3Q9Y2Y8 225 aaPredicted RBP9.16□□□□□ -0.94
CCDC40-212ENST00000574799 WISP3O95389 354 aaPredicted RBP9.16□□□□□ -0.94
CCDC40-212ENST00000574799 CLDN9O95484 217 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 PRPS2P11908 318 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 ICAM2P13598 275 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 SGSHP51688 502 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 TSPAN5P62079 268 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 SCRN3Q0VDG4 424 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 ADAM15Q13444 863 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 IDNKQ5T6J7 187 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 METTL2BQ6P1Q9 378 aaKnown RBP9.16□□□□□ -0.94
CCDC40-212ENST00000574799 GDPGP1Q6ZNW5 385 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 ABI3BPQ7Z7G0 1075 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 SPATA2LQ8IUW3 424 aaPredicted RBP9.16□□□□□ -0.94
CCDC40-212ENST00000574799 FTMTQ8N4E7 242 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 OR2T35Q8NGX2 323 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 ZNF296Q8WUU4 475 aaPredicted RBP9.16□□□□□ -0.94
CCDC40-212ENST00000574799 ZSWIM3Q96MP5 696 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 CLMPQ9H6B4 373 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 CWH43Q9H720 699 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 LIN7BQ9HAP6 207 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 RC3H2Q9HBD1 1191 aaKnown RBP9.16□□□□□ -0.94
CCDC40-212ENST00000574799 PLCXD1Q9NUJ7 323 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 EXTL2Q9UBQ6 330 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 RPL36Q9Y3U8 105 aaKnown RBP9.16□□□□□ -0.94
CCDC40-212ENST00000574799 GOLGA4Q13439 2230 aaKnown RBP9.16□□□□□ -0.94
CCDC40-212ENST00000574799 SPEGQ15772 3267 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 A0A1W2PPL8 197 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 PLA2G10O15496 165 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 STK16O75716 305 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 NUDT7P0C024 238 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 XPAP23025 273 aaPredicted RBP9.16□□□□□ -0.94
CCDC40-212ENST00000574799 TACR1P25103 407 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 SLC6A4P31645 630 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 MAP2K6P52564 334 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 TBX4P57082 545 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 SSX1Q16384 188 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 DUOXA1Q1HG43 343 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 PSAPL1Q6NUJ1 521 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 TMIGD1Q6UXZ0 262 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 HSDL2Q6YN16 418 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 TEX26Q8N6G2 289 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 FAM46DQ8NEK8 389 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 PIGKQ92643 395 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 PKP4Q99569 1192 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 TMED9Q9BVK6 235 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 ARNT2Q9HBZ2 717 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 PHF11Q9UIL8 331 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 CLCA2Q9UQC9 943 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 HRH3Q9Y5N1 445 aa9.16□□□□□ -0.94
CCDC40-212ENST00000574799 TRIOO75962 3097 aa9.15□□□□□ -0.94
CCDC40-212ENST00000574799 A0A0B4J293 547 aa9.15□□□□□ -0.94
CCDC40-212ENST00000574799 SLC9A3R1O14745 358 aaPredicted RBP9.15□□□□□ -0.94
CCDC40-212ENST00000574799 PCDH17O14917 1159 aa9.15□□□□□ -0.94
CCDC40-212ENST00000574799 TLX2O43763 284 aaPredicted RBP9.15□□□□□ -0.94
CCDC40-212ENST00000574799 TRBC1P01850 177 aa9.15□□□□□ -0.94
CCDC40-212ENST00000574799 LINC00271P0C7V0 271 aa9.15□□□□□ -0.94
CCDC40-212ENST00000574799 ITGB8P26012 769 aa9.15□□□□□ -0.94
CCDC40-212ENST00000574799 OR1G1P47890 313 aa9.15□□□□□ -0.94
CCDC40-212ENST00000574799 MARCH9Q86YJ5 346 aa9.15□□□□□ -0.94
CCDC40-212ENST00000574799 SYT14Q8NB59 555 aa9.15□□□□□ -0.94
CCDC40-212ENST00000574799 TMEM145Q8NBT3 493 aa9.15□□□□□ -0.94
CCDC40-212ENST00000574799 OR8K5Q8NH50 307 aa9.15□□□□□ -0.94
CCDC40-212ENST00000574799 SMG7Q92540 1137 aaKnown RBP9.15□□□□□ -0.94
CCDC40-212ENST00000574799 RNF31Q96EP0 1072 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms