RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 ACER3Q9NUN7 267 aa13.83□□□□□ -0.19
VPS35-210ENST00000568784 PADI2Q9Y2J8 665 aa13.83□□□□□ -0.19
VPS35-210ENST00000568784 ANKRD36A6QL64 1941 aa13.83□□□□□ -0.2
VPS35-210ENST00000568784 A0A1B0GVC2 190 aa13.83□□□□□ -0.2
VPS35-210ENST00000568784 A6NIN4 97 aa13.83□□□□□ -0.2
VPS35-210ENST00000568784 M0R3H8 397 aa13.83□□□□□ -0.2
VPS35-210ENST00000568784 CRYBA2P53672 197 aa13.83□□□□□ -0.2
VPS35-210ENST00000568784 CST9Q5W186 159 aa13.83□□□□□ -0.2
VPS35-210ENST00000568784 PLPP6Q8IY26 295 aa13.83□□□□□ -0.2
VPS35-210ENST00000568784 OR52N2Q8NGI0 321 aa13.83□□□□□ -0.2
VPS35-210ENST00000568784 SLC9A6Q92581 669 aa13.83□□□□□ -0.2
VPS35-210ENST00000568784 TRBV5-4A0A0C4DH59 114 aa13.83□□□□□ -0.2
VPS35-210ENST00000568784 SSX1Q16384 188 aa13.83□□□□□ -0.2
VPS35-210ENST00000568784 CRB2Q5IJ48 1285 aa13.83□□□□□ -0.2
VPS35-210ENST00000568784 KIAA1958Q8N8K9 716 aa13.83□□□□□ -0.2
VPS35-210ENST00000568784 FLCNQ8NFG4 579 aa13.83□□□□□ -0.2
VPS35-210ENST00000568784 LRR1Q96L50 414 aa13.83□□□□□ -0.2
VPS35-210ENST00000568784 FRMD6Q96NE9 622 aa13.83□□□□□ -0.2
VPS35-210ENST00000568784 OR4K3Q96R72 315 aa13.83□□□□□ -0.2
VPS35-210ENST00000568784 NLKQ9UBE8 527 aa13.83□□□□□ -0.2
VPS35-210ENST00000568784 SMLR1H3BR10 107 aa13.82□□□□□ -0.2
VPS35-210ENST00000568784 H1F0P07305 194 aaKnown RBP13.82□□□□□ -0.2
VPS35-210ENST00000568784 MAPK12P53778 367 aa13.82□□□□□ -0.2
VPS35-210ENST00000568784 BCL2A1Q16548 175 aa13.82□□□□□ -0.2
VPS35-210ENST00000568784 PLEKHS1Q5SXH7 462 aa13.82□□□□□ -0.2
VPS35-210ENST00000568784 DDI2Q5TDH0 399 aa13.82□□□□□ -0.2
VPS35-210ENST00000568784 ASB18Q6ZVZ8 466 aa13.82□□□□□ -0.2
VPS35-210ENST00000568784 ARMCX6Q7L4S7 300 aa13.82□□□□□ -0.2
VPS35-210ENST00000568784 ATP6V1C2Q8NEY4 427 aa13.82□□□□□ -0.2
VPS35-210ENST00000568784 C2orf15Q8WU43 125 aaKnown RBP13.82□□□□□ -0.2
VPS35-210ENST00000568784 REPS1Q96D71 796 aa13.82□□□□□ -0.2
VPS35-210ENST00000568784 CWH43Q9H720 699 aa13.82□□□□□ -0.2
VPS35-210ENST00000568784 MRPS7Q9Y2R9 242 aaKnown RBP13.82□□□□□ -0.2
VPS35-210ENST00000568784 SNX11Q9Y5W9 270 aa13.82□□□□□ -0.2
VPS35-210ENST00000568784 DICER1Q9UPY3 1922 aaKnown RBP13.82□□□□□ -0.2
VPS35-210ENST00000568784 FAM172BPA6NC97 362 aa13.82□□□□□ -0.2
VPS35-210ENST00000568784 RFXAPO00287 272 aa13.82□□□□□ -0.2
VPS35-210ENST00000568784 ZNF8P17098 575 aaPredicted RBP13.82□□□□□ -0.2
VPS35-210ENST00000568784 ZNF91Q05481 1191 aa13.82□□□□□ -0.2
VPS35-210ENST00000568784 GINS1Q14691 196 aa13.82□□□□□ -0.2
VPS35-210ENST00000568784 GGTA1PQ4G0N0 100 aa13.82□□□□□ -0.2
VPS35-210ENST00000568784 RAET1GQ6H3X3 334 aa13.82□□□□□ -0.2
VPS35-210ENST00000568784 GDPD4Q6W3E5 623 aa13.82□□□□□ -0.2
VPS35-210ENST00000568784 TMEM19Q96HH6 336 aa13.82□□□□□ -0.2
VPS35-210ENST00000568784 HDHD5Q9BXW7 423 aa13.82□□□□□ -0.2
VPS35-210ENST00000568784 TRIM45Q9H8W5 580 aaPredicted RBP13.82□□□□□ -0.2
VPS35-210ENST00000568784 SCAMP1O15126 338 aa13.82□□□□□ -0.2
VPS35-210ENST00000568784 LEFTY1O75610 366 aa13.82□□□□□ -0.2
VPS35-210ENST00000568784 ALDH1A1P00352 501 aa13.82□□□□□ -0.2
VPS35-210ENST00000568784 ACVR2AP27037 513 aa13.82□□□□□ -0.2
VPS35-210ENST00000568784 IMPA1P29218 277 aa13.82□□□□□ -0.2
VPS35-210ENST00000568784 HLA-FP30511 346 aa13.82□□□□□ -0.2
VPS35-210ENST00000568784 IRF3Q14653 427 aa13.82□□□□□ -0.2
VPS35-210ENST00000568784 PPP2R2DQ66LE6 453 aa13.82□□□□□ -0.2
VPS35-210ENST00000568784 KIAA1161Q6NSJ0 714 aa13.82□□□□□ -0.2
VPS35-210ENST00000568784 REEP3Q6NUK4 255 aa13.82□□□□□ -0.2
VPS35-210ENST00000568784 B3GLCTQ6Y288 498 aa13.82□□□□□ -0.2
VPS35-210ENST00000568784 MSANTD1Q6ZTZ1 278 aa13.82□□□□□ -0.2
VPS35-210ENST00000568784 TET1Q8NFU7 2136 aa13.82□□□□□ -0.2
VPS35-210ENST00000568784 OR6F1Q8NGZ6 308 aa13.82□□□□□ -0.2
VPS35-210ENST00000568784 C16orf78Q8WTQ4 265 aa13.82□□□□□ -0.2
VPS35-210ENST00000568784 OPALINQ96PE5 141 aa13.82□□□□□ -0.2
VPS35-210ENST00000568784 PRR14Q9BWN1 585 aa13.82□□□□□ -0.2
VPS35-210ENST00000568784 SLC6A16Q9GZN6 736 aa13.82□□□□□ -0.2
VPS35-210ENST00000568784 BTNL2Q9UIR0 455 aa13.82□□□□□ -0.2
VPS35-210ENST00000568784 RPL36Q9Y3U8 105 aaKnown RBP13.82□□□□□ -0.2
VPS35-210ENST00000568784 HOXC11O43248 304 aaPredicted RBP13.81□□□□□ -0.2
VPS35-210ENST00000568784 MRPS14O60783 128 aaKnown RBP13.81□□□□□ -0.2
VPS35-210ENST00000568784 CSO75390 466 aaKnown RBP13.81□□□□□ -0.2
VPS35-210ENST00000568784 HOXC5Q00444 222 aa13.81□□□□□ -0.2
VPS35-210ENST00000568784 MAP4K2Q12851 820 aa13.81□□□□□ -0.2
VPS35-210ENST00000568784 TRIM71Q2Q1W2 868 aaKnown RBP13.81□□□□□ -0.2
VPS35-210ENST00000568784 IQCHQ86VS3 1027 aa13.81□□□□□ -0.2
VPS35-210ENST00000568784 TMEM25Q86YD3 366 aa13.81□□□□□ -0.2
VPS35-210ENST00000568784 KAT2AQ92830 837 aa13.81□□□□□ -0.2
VPS35-210ENST00000568784 TP53INP1Q96A56 240 aa13.81□□□□□ -0.2
VPS35-210ENST00000568784 TBX5Q99593 518 aa13.81□□□□□ -0.2
VPS35-210ENST00000568784 WACQ9BTA9 647 aa13.81□□□□□ -0.2
VPS35-210ENST00000568784 C11orf54Q9H0W9 315 aaPredicted RBP13.81□□□□□ -0.2
VPS35-210ENST00000568784 SEC14L4Q9UDX3 406 aa13.81□□□□□ -0.2
VPS35-210ENST00000568784 HSPB11Q9Y547 144 aa13.81□□□□□ -0.2
VPS35-210ENST00000568784 KLK4Q9Y5K2 254 aa13.81□□□□□ -0.2
VPS35-210ENST00000568784 PRR23AA6NEV1 266 aa13.81□□□□□ -0.2
VPS35-210ENST00000568784 H3BQ06 376 aaPredicted RBP13.81□□□□□ -0.2
VPS35-210ENST00000568784 GCM2O75603 506 aaPredicted RBP13.81□□□□□ -0.2
VPS35-210ENST00000568784 YES1P07947 543 aa13.81□□□□□ -0.2
VPS35-210ENST00000568784 SLC2A2P11168 524 aaPredicted RBP13.81□□□□□ -0.2
VPS35-210ENST00000568784 CYP2A6P11509 494 aaPredicted RBP13.81□□□□□ -0.2
VPS35-210ENST00000568784 APEX1P27695 318 aaKnown RBP13.81□□□□□ -0.2
VPS35-210ENST00000568784 HTR2BP41595 481 aa13.81□□□□□ -0.2
VPS35-210ENST00000568784 DGKGP49619 791 aa13.81□□□□□ -0.2
VPS35-210ENST00000568784 TMEM115Q12893 351 aaPredicted RBP13.81□□□□□ -0.2
VPS35-210ENST00000568784 EIF4HQ15056 248 aaKnown RBP13.81□□□□□ -0.2
VPS35-210ENST00000568784 ZNF630Q2M218 657 aaPredicted RBP13.81□□□□□ -0.2
VPS35-210ENST00000568784 GRHL2Q6ISB3 625 aa13.81□□□□□ -0.2
VPS35-210ENST00000568784 UBQLNLQ8IYU4 475 aa13.81□□□□□ -0.2
VPS35-210ENST00000568784 OR2A14Q96R47 310 aa13.81□□□□□ -0.2
VPS35-210ENST00000568784 MND1Q9BWT6 205 aa13.81□□□□□ -0.2
VPS35-210ENST00000568784 TBC1D24Q9ULP9 559 aa13.81□□□□□ -0.2
VPS35-210ENST00000568784 CLCA2Q9UQC9 943 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms