RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 WASHC1A8K0Z3 465 aa28.87■■■□□ 2.21
CTCF-203ENST00000566078 C6orf47O95873 294 aa28.87■■■□□ 2.21
CTCF-203ENST00000566078 HOXB9P17482 250 aaPredicted RBP28.87■■■□□ 2.21
CTCF-203ENST00000566078 PTPN6P29350 595 aa28.87■■■□□ 2.21
CTCF-203ENST00000566078 TLX1P31314 330 aaPredicted RBP28.87■■■□□ 2.21
CTCF-203ENST00000566078 HNRNPFP52597 415 aaKnown RBP28.87■■■□□ 2.21
CTCF-203ENST00000566078 RAB38P57729 211 aa28.87■■■□□ 2.21
CTCF-203ENST00000566078 TTLL10Q6ZVT0 673 aa28.87■■■□□ 2.21
CTCF-203ENST00000566078 ARPINQ7Z6K5 226 aa28.87■■■□□ 2.21
CTCF-203ENST00000566078 FBXW8Q8N3Y1 598 aa28.87■■■□□ 2.21
CTCF-203ENST00000566078 RNF148Q8N7C7 305 aa28.87■■■□□ 2.21
CTCF-203ENST00000566078 TMEM125Q96AQ2 219 aa28.87■■■□□ 2.21
CTCF-203ENST00000566078 GBP5Q96PP8 586 aa28.87■■■□□ 2.21
CTCF-203ENST00000566078 NDC1Q9BTX1 674 aa28.87■■■□□ 2.21
CTCF-203ENST00000566078 SIDT1Q9NXL6 827 aaKnown RBP28.87■■■□□ 2.21
CTCF-203ENST00000566078 HCN3Q9P1Z3 774 aa28.87■■■□□ 2.21
CTCF-203ENST00000566078 ABCD2Q9UBJ2 740 aa28.87■■■□□ 2.21
CTCF-203ENST00000566078 CES1P1Q9UKY3 287 aa28.87■■■□□ 2.21
CTCF-203ENST00000566078 H0YHG0 523 aa28.86■■■□□ 2.21
CTCF-203ENST00000566078 ERAL1O75616 437 aaKnown RBP28.86■■■□□ 2.21
CTCF-203ENST00000566078 ABCB1P08183 1280 aaPredicted RBP28.86■■■□□ 2.21
CTCF-203ENST00000566078 GCGRP47871 477 aa28.86■■■□□ 2.21
CTCF-203ENST00000566078 PDX1P52945 283 aa28.86■■■□□ 2.21
CTCF-203ENST00000566078 ZFP36L1Q07352 338 aaKnown RBP28.86■■■□□ 2.21
CTCF-203ENST00000566078 PIGGQ5H8A4 983 aa28.86■■■□□ 2.21
CTCF-203ENST00000566078 RABL3Q5HYI8 236 aa28.86■■■□□ 2.21
CTCF-203ENST00000566078 PRAMEF17Q5VTA0 474 aa28.86■■■□□ 2.21
CTCF-203ENST00000566078 OR52E8Q6IFG1 317 aa28.86■■■□□ 2.21
CTCF-203ENST00000566078 PGM2L1Q6PCE3 622 aa28.86■■■□□ 2.21
CTCF-203ENST00000566078 SHISA5Q8N114 240 aa28.86■■■□□ 2.21
CTCF-203ENST00000566078 MMABQ96EY8 250 aaPredicted RBP28.86■■■□□ 2.21
CTCF-203ENST00000566078 ANKRD27Q96NW4 1050 aa28.86■■■□□ 2.21
CTCF-203ENST00000566078 SLAMF7Q9NQ25 335 aa28.86■■■□□ 2.21
CTCF-203ENST00000566078 SLC35C2Q9NQQ7 365 aa28.86■■■□□ 2.21
CTCF-203ENST00000566078 CMTM6Q9NX76 183 aa28.86■■■□□ 2.21
CTCF-203ENST00000566078 L3MBTL1Q9Y468 752 aa28.86■■■□□ 2.21
CTCF-203ENST00000566078 NME4O00746 187 aa28.85■■■□□ 2.21
CTCF-203ENST00000566078 NVLO15381 856 aaKnown RBP28.85■■■□□ 2.21
CTCF-203ENST00000566078 CHST10O43529 356 aa28.85■■■□□ 2.21
CTCF-203ENST00000566078 HYAL3O43820 417 aaPredicted RBP28.85■■■□□ 2.21
CTCF-203ENST00000566078 FOXD2O60548 495 aaPredicted RBP28.85■■■□□ 2.21
CTCF-203ENST00000566078 SORBS2O94875 1100 aaKnown RBP28.85■■■□□ 2.21
CTCF-203ENST00000566078 MTPNP58546 118 aa28.85■■■□□ 2.21
CTCF-203ENST00000566078 CEACAM7Q14002 265 aa28.85■■■□□ 2.21
CTCF-203ENST00000566078 C16orf72Q14CZ0 275 aa28.85■■■□□ 2.21
CTCF-203ENST00000566078 RBM44Q6ZP01 1051 aaKnown RBP28.85■■■□□ 2.21
CTCF-203ENST00000566078 HPS6Q86YV9 775 aa28.85■■■□□ 2.21
CTCF-203ENST00000566078 SLC15A3Q8IY34 581 aa28.85■■■□□ 2.21
CTCF-203ENST00000566078 RPF2Q9H7B2 306 aaKnown RBP28.85■■■□□ 2.21
CTCF-203ENST00000566078 NDOR1Q9UHB4 597 aa28.85■■■□□ 2.21
CTCF-203ENST00000566078 SLC7A8Q9UHI5 535 aa28.85■■■□□ 2.21
CTCF-203ENST00000566078 PCDHGB4Q9UN71 923 aa28.85■■■□□ 2.21
CTCF-203ENST00000566078 ERVK-11Q9UQG0 969 aa28.85■■■□□ 2.21
CTCF-203ENST00000566078 ZNF749O43361 778 aa28.84■■■□□ 2.21
CTCF-203ENST00000566078 RFPL3O75679 317 aa28.84■■■□□ 2.21
CTCF-203ENST00000566078 CSTF2P33240 577 aaKnown RBP eCLIP28.84■■■□□ 2.21
CTCF-203ENST00000566078 PCBP4P57723 403 aaKnown RBP28.84■■■□□ 2.21
CTCF-203ENST00000566078 SIM1P81133 766 aaPredicted RBP28.84■■■□□ 2.21
CTCF-203ENST00000566078 SELPLGQ14242 412 aa28.84■■■□□ 2.21
CTCF-203ENST00000566078 STPG1Q5TH74 334 aa28.84■■■□□ 2.21
CTCF-203ENST00000566078 ZNF621Q6ZSS3 439 aa28.84■■■□□ 2.21
CTCF-203ENST00000566078 FAM13CQ8NE31 585 aa28.84■■■□□ 2.21
CTCF-203ENST00000566078 CCDC124Q96CT7 223 aaKnown RBP28.84■■■□□ 2.21
CTCF-203ENST00000566078 VPS4AQ9UN37 437 aa28.84■■■□□ 2.21
CTCF-203ENST00000566078 ENTPD4Q9Y227 616 aa28.84■■■□□ 2.21
CTCF-203ENST00000566078 EP300Q09472 2414 aaPredicted RBP28.84■■■□□ 2.21
CTCF-203ENST00000566078 NTSP30990 170 aa28.83■■■□□ 2.21
CTCF-203ENST00000566078 FRKP42685 505 aaPredicted RBP28.83■■■□□ 2.21
CTCF-203ENST00000566078 HBA1P69905 142 aa28.83■■■□□ 2.21
CTCF-203ENST00000566078 MAT1AQ00266 395 aaKnown RBP28.83■■■□□ 2.21
CTCF-203ENST00000566078 RUNDC3AQ59EK9 446 aa28.83■■■□□ 2.21
CTCF-203ENST00000566078 SAMD4BQ5PRF9 694 aaKnown RBP28.83■■■□□ 2.21
CTCF-203ENST00000566078 YOD1Q5VVQ6 348 aaPredicted RBP28.83■■■□□ 2.21
CTCF-203ENST00000566078 OR8J3Q8NGG0 315 aa28.83■■■□□ 2.21
CTCF-203ENST00000566078 ZBED6CLQ96FA7 236 aaPredicted RBP28.83■■■□□ 2.21
CTCF-203ENST00000566078 AURKBQ96GD4 344 aaPredicted RBP28.83■■■□□ 2.21
CTCF-203ENST00000566078 BBS4Q96RK4 519 aa28.83■■■□□ 2.21
CTCF-203ENST00000566078 GIMAP4Q9NUV9 329 aa28.83■■■□□ 2.21
CTCF-203ENST00000566078 OCIAD1Q9NX40 245 aa28.83■■■□□ 2.21
CTCF-203ENST00000566078 DHCR7Q9UBM7 475 aaKnown RBP28.83■■■□□ 2.21
CTCF-203ENST00000566078 RARRES3Q9UL19 164 aa28.83■■■□□ 2.21
CTCF-203ENST00000566078 H0YIG0 161 aa28.83■■■□□ 2.21
CTCF-203ENST00000566078 ALAS2P22557 587 aa28.83■■■□□ 2.21
CTCF-203ENST00000566078 ARSFP54793 590 aa28.83■■■□□ 2.21
CTCF-203ENST00000566078 MANFP55145 182 aaKnown RBP28.83■■■□□ 2.21
CTCF-203ENST00000566078 ILKQ13418 452 aa28.83■■■□□ 2.21
CTCF-203ENST00000566078 MVB12AQ96EY5 273 aa28.83■■■□□ 2.21
CTCF-203ENST00000566078 PRDM9Q9NQV7 894 aa28.83■■■□□ 2.21
CTCF-203ENST00000566078 PSME2Q9UL46 239 aa28.83■■■□□ 2.21
CTCF-203ENST00000566078 EFCAB7A8K855 629 aa28.82■■■□□ 2.2
CTCF-203ENST00000566078 CYR61O00622 381 aa28.82■■■□□ 2.2
CTCF-203ENST00000566078 DSCR3O14972 297 aa28.82■■■□□ 2.2
CTCF-203ENST00000566078 CIB2O75838 187 aa28.82■■■□□ 2.2
CTCF-203ENST00000566078 RNH1P13489 461 aaKnown RBP28.82■■■□□ 2.2
CTCF-203ENST00000566078 GAB1Q13480 694 aa28.82■■■□□ 2.2
CTCF-203ENST00000566078 AGBL5Q8NDL9 886 aa28.82■■■□□ 2.2
CTCF-203ENST00000566078 TMEM52Q8NDY8 209 aa28.82■■■□□ 2.2
CTCF-203ENST00000566078 GOT1L1Q8NHS2 421 aaPredicted RBP28.82■■■□□ 2.2
CTCF-203ENST00000566078 OR5P2Q8WZ92 322 aa28.82■■■□□ 2.2
CTCF-203ENST00000566078 CNRIP1Q96F85 164 aaPredicted RBP28.82■■■□□ 2.2
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms