RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 NXNQ6DKJ4 435 aa12.05□□□□□ -0.48
SHMT2-227ENST00000557269 FAM71E1Q6IPT2 247 aa12.05□□□□□ -0.48
SHMT2-227ENST00000557269 OGFOD2Q6N063 350 aa12.05□□□□□ -0.48
SHMT2-227ENST00000557269 FAM180BQ6P0A1 224 aa12.05□□□□□ -0.48
SHMT2-227ENST00000557269 LANCL3Q6ZV70 420 aa12.05□□□□□ -0.48
SHMT2-227ENST00000557269 SCUBE1Q8IWY4 988 aa12.05□□□□□ -0.48
SHMT2-227ENST00000557269 KDF1Q8NAX2 398 aaPredicted RBP12.05□□□□□ -0.48
SHMT2-227ENST00000557269 STARD8Q92502 1023 aa12.05□□□□□ -0.48
SHMT2-227ENST00000557269 GFM2Q969S9 779 aaKnown RBP12.05□□□□□ -0.48
SHMT2-227ENST00000557269 CHMP6Q96FZ7 201 aa12.05□□□□□ -0.48
SHMT2-227ENST00000557269 MARK4Q96L34 752 aa12.05□□□□□ -0.48
SHMT2-227ENST00000557269 TSSK3Q96PN8 268 aa12.05□□□□□ -0.48
SHMT2-227ENST00000557269 CRB3Q9BUF7 120 aa12.05□□□□□ -0.48
SHMT2-227ENST00000557269 RABEP2Q9H5N1 569 aa12.05□□□□□ -0.48
SHMT2-227ENST00000557269 RPF2Q9H7B2 306 aaKnown RBP12.05□□□□□ -0.48
SHMT2-227ENST00000557269 MYNNQ9NPC7 610 aa12.05□□□□□ -0.48
SHMT2-227ENST00000557269 PRTFDC1Q9NRG1 225 aa12.05□□□□□ -0.48
SHMT2-227ENST00000557269 MS4A12Q9NXJ0 267 aa12.05□□□□□ -0.48
SHMT2-227ENST00000557269 KCND3Q9UK17 655 aa12.05□□□□□ -0.48
SHMT2-227ENST00000557269 NXT1Q9UKK6 140 aaKnown RBP12.05□□□□□ -0.48
SHMT2-227ENST00000557269 CES1P1Q9UKY3 287 aa12.05□□□□□ -0.48
SHMT2-227ENST00000557269 G3BP2Q9UN86 482 aaKnown RBP12.05□□□□□ -0.48
SHMT2-227ENST00000557269 PADI2Q9Y2J8 665 aa12.05□□□□□ -0.48
SHMT2-227ENST00000557269 TMED5Q9Y3A6 229 aa12.05□□□□□ -0.48
SHMT2-227ENST00000557269 PCDHA9Q9Y5H5 950 aa12.05□□□□□ -0.48
SHMT2-227ENST00000557269 NUP210LQ5VU65 1888 aa12.05□□□□□ -0.48
SHMT2-227ENST00000557269 A0A0G2JND7 137 aa12.04□□□□□ -0.48
SHMT2-227ENST00000557269 GMNCA6NCL1 334 aa12.04□□□□□ -0.48
SHMT2-227ENST00000557269 MASP2O00187 686 aa12.04□□□□□ -0.48
SHMT2-227ENST00000557269 AKAP10O43572 662 aa12.04□□□□□ -0.48
SHMT2-227ENST00000557269 FGF17O60258 216 aa12.04□□□□□ -0.48
SHMT2-227ENST00000557269 PRMT3O60678 531 aa12.04□□□□□ -0.48
SHMT2-227ENST00000557269 CTNSO60931 367 aa12.04□□□□□ -0.48
SHMT2-227ENST00000557269 LRATO95237 230 aa12.04□□□□□ -0.48
SHMT2-227ENST00000557269 HEXBP07686 556 aa12.04□□□□□ -0.48
SHMT2-227ENST00000557269 ACPPP15309 386 aa12.04□□□□□ -0.48
SHMT2-227ENST00000557269 DRD4P21917 467 aa12.04□□□□□ -0.48
SHMT2-227ENST00000557269 JAK1P23458 1154 aa12.04□□□□□ -0.48
SHMT2-227ENST00000557269 PPP2R1BP30154 601 aa12.04□□□□□ -0.48
SHMT2-227ENST00000557269 OTX2P32243 289 aa12.04□□□□□ -0.48
SHMT2-227ENST00000557269 ALDH9A1P49189 494 aa12.04□□□□□ -0.48
SHMT2-227ENST00000557269 TLE3Q04726 772 aa12.04□□□□□ -0.48
SHMT2-227ENST00000557269 C2orf80Q0P641 193 aa12.04□□□□□ -0.48
SHMT2-227ENST00000557269 SLC13A2Q13183 592 aa12.04□□□□□ -0.48
SHMT2-227ENST00000557269 SMU1Q2TAY7 513 aa12.04□□□□□ -0.48
SHMT2-227ENST00000557269 ZNF750Q32MQ0 723 aa12.04□□□□□ -0.48
SHMT2-227ENST00000557269 ANKRD26P1Q6NSI1 321 aa12.04□□□□□ -0.48
SHMT2-227ENST00000557269 PPP1R32Q7Z5V6 425 aa12.04□□□□□ -0.48
SHMT2-227ENST00000557269 ZNF595Q8IYB9 648 aa12.04□□□□□ -0.48
SHMT2-227ENST00000557269 KRTCAP2Q8N6L1 136 aa12.04□□□□□ -0.48
SHMT2-227ENST00000557269 PLPP5Q8NEB5 264 aa12.04□□□□□ -0.48
SHMT2-227ENST00000557269 DNAJB14Q8TBM8 379 aa12.04□□□□□ -0.48
SHMT2-227ENST00000557269 ADAMTS17Q8TE56 1095 aa12.04□□□□□ -0.48
SHMT2-227ENST00000557269 ADAMTS18Q8TE60 1221 aa12.04□□□□□ -0.48
SHMT2-227ENST00000557269 C8orf44Q96CB5 159 aa12.04□□□□□ -0.48
SHMT2-227ENST00000557269 PTCHD1Q96NR3 888 aa12.04□□□□□ -0.48
SHMT2-227ENST00000557269 CCNL2Q96S94 520 aaPredicted RBP12.04□□□□□ -0.48
SHMT2-227ENST00000557269 TMEM120AQ9BXJ8 343 aa12.04□□□□□ -0.48
SHMT2-227ENST00000557269 TRIM55Q9BYV6 548 aa12.04□□□□□ -0.48
SHMT2-227ENST00000557269 TCF7L2Q9NQB0 619 aa12.04□□□□□ -0.48
SHMT2-227ENST00000557269 PRDM9Q9NQV7 894 aa12.04□□□□□ -0.48
SHMT2-227ENST00000557269 ASIC5Q9NY37 505 aa12.04□□□□□ -0.48
SHMT2-227ENST00000557269 NOP53Q9NZM5 478 aaKnown RBP12.04□□□□□ -0.48
SHMT2-227ENST00000557269 EIF3LQ9Y262 564 aaKnown RBP12.04□□□□□ -0.48
SHMT2-227ENST00000557269 HS3ST3B1Q9Y662 390 aa12.04□□□□□ -0.48
SHMT2-227ENST00000557269 SPACA6W5XKT8 324 aa12.04□□□□□ -0.48
SHMT2-227ENST00000557269 APC2O95996 2303 aa12.03□□□□□ -0.48
SHMT2-227ENST00000557269 IGHV3-20A0A0C4DH32 117 aa12.03□□□□□ -0.48
SHMT2-227ENST00000557269 E9PBE3 544 aa12.03□□□□□ -0.48
SHMT2-227ENST00000557269 SOCS6O14544 535 aa12.03□□□□□ -0.48
SHMT2-227ENST00000557269 ANKRD28O15084 1053 aa12.03□□□□□ -0.48
SHMT2-227ENST00000557269 KLHL41O60662 606 aa12.03□□□□□ -0.48
SHMT2-227ENST00000557269 ALOX12BO75342 701 aa12.03□□□□□ -0.48
SHMT2-227ENST00000557269 CD63P08962 238 aa12.03□□□□□ -0.48
SHMT2-227ENST00000557269 C8orf89P0DMQ9 161 aa12.03□□□□□ -0.48
SHMT2-227ENST00000557269 TLX1P31314 330 aaPredicted RBP12.03□□□□□ -0.48
SHMT2-227ENST00000557269 BUD31P41223 144 aaPredicted RBP12.03□□□□□ -0.48
SHMT2-227ENST00000557269 HSD17B7P56937 341 aa12.03□□□□□ -0.48
SHMT2-227ENST00000557269 FOLH1Q04609 750 aa12.03□□□□□ -0.48
SHMT2-227ENST00000557269 DUSP2Q05923 314 aa12.03□□□□□ -0.48
SHMT2-227ENST00000557269 SSPNQ14714 243 aa12.03□□□□□ -0.48
SHMT2-227ENST00000557269 SLC48A1Q6P1K1 146 aa12.03□□□□□ -0.48
SHMT2-227ENST00000557269 TMEM205Q6UW68 189 aa12.03□□□□□ -0.48
SHMT2-227ENST00000557269 KIRREL2Q6UWL6 708 aa12.03□□□□□ -0.48
SHMT2-227ENST00000557269 QSOX2Q6ZRP7 698 aa12.03□□□□□ -0.48
SHMT2-227ENST00000557269 ACAD11Q709F0 780 aa12.03□□□□□ -0.48
SHMT2-227ENST00000557269 SPATA19Q7Z5L4 167 aa12.03□□□□□ -0.48
SHMT2-227ENST00000557269 ANKRD37Q7Z713 158 aa12.03□□□□□ -0.48
SHMT2-227ENST00000557269 TMEM132CQ8N3T6 1108 aa12.03□□□□□ -0.48
SHMT2-227ENST00000557269 CEP70Q8NHQ1 597 aa12.03□□□□□ -0.48
SHMT2-227ENST00000557269 TANKQ92844 425 aa12.03□□□□□ -0.48
SHMT2-227ENST00000557269 TEX37Q96LM6 180 aa12.03□□□□□ -0.48
SHMT2-227ENST00000557269 CCDC28BQ9BUN5 200 aa12.03□□□□□ -0.48
SHMT2-227ENST00000557269 FAM117AQ9C073 453 aa12.03□□□□□ -0.48
SHMT2-227ENST00000557269 FAM107BQ9H098 131 aa12.03□□□□□ -0.48
SHMT2-227ENST00000557269 SEMA3GQ9NS98 782 aa12.03□□□□□ -0.48
SHMT2-227ENST00000557269 AIG1Q9NVV5 245 aa12.03□□□□□ -0.48
SHMT2-227ENST00000557269 ADAM21Q9UKJ8 722 aa12.03□□□□□ -0.48
SHMT2-227ENST00000557269 MMACHCQ9Y4U1 282 aa12.03□□□□□ -0.48
SHMT2-227ENST00000557269 GPR45Q9Y5Y3 372 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms