RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 GTF2E2P29084 291 aaKnown RBP11.02□□□□□ -0.64
VPS4A-201ENST00000254950 CPOXP36551 454 aa11.02□□□□□ -0.64
VPS4A-201ENST00000254950 C14orf28Q4W4Y0 310 aa11.02□□□□□ -0.64
VPS4A-201ENST00000254950 RUNDC3AQ59EK9 446 aa11.02□□□□□ -0.64
VPS4A-201ENST00000254950 OR2T5Q6IEZ7 315 aa11.02□□□□□ -0.64
VPS4A-201ENST00000254950 RANBP3LQ86VV4 465 aaPredicted RBP11.02□□□□□ -0.64
VPS4A-201ENST00000254950 OR4N5Q8IXE1 308 aa11.02□□□□□ -0.64
VPS4A-201ENST00000254950 LAS2Q8IYD9 372 aa11.02□□□□□ -0.64
VPS4A-201ENST00000254950 FRMD1Q8N878 549 aa11.02□□□□□ -0.64
VPS4A-201ENST00000254950 OR2T29Q8NH02 315 aa11.02□□□□□ -0.64
VPS4A-201ENST00000254950 CHTF18Q8WVB6 975 aa11.02□□□□□ -0.64
VPS4A-201ENST00000254950 KAT2AQ92830 837 aa11.02□□□□□ -0.64
VPS4A-201ENST00000254950 OR4K3Q96R72 315 aa11.02□□□□□ -0.64
VPS4A-201ENST00000254950 IER2Q9BTL4 223 aa11.02□□□□□ -0.64
VPS4A-201ENST00000254950 SPHK1Q9NYA1 384 aa11.02□□□□□ -0.64
VPS4A-201ENST00000254950 MBD1Q9UIS9 605 aaPredicted RBP11.02□□□□□ -0.64
VPS4A-201ENST00000254950 OAZ3Q9UMX2 235 aa11.02□□□□□ -0.64
VPS4A-201ENST00000254950 FRMPD3Q5JV73 1810 aa11.02□□□□□ -0.65
VPS4A-201ENST00000254950 A0A087WXM4 84 aa11.02□□□□□ -0.65
VPS4A-201ENST00000254950 YKT6O15498 198 aa11.02□□□□□ -0.65
VPS4A-201ENST00000254950 GADD45GO95257 159 aa11.02□□□□□ -0.65
VPS4A-201ENST00000254950 WISP3O95389 354 aaPredicted RBP11.02□□□□□ -0.65
VPS4A-201ENST00000254950 ETFAP13804 333 aa11.02□□□□□ -0.65
VPS4A-201ENST00000254950 PEX19P40855 299 aa11.02□□□□□ -0.65
VPS4A-201ENST00000254950 ARSFP54793 590 aa11.02□□□□□ -0.65
VPS4A-201ENST00000254950 MS4A2Q01362 244 aa11.02□□□□□ -0.65
VPS4A-201ENST00000254950 MTAPQ13126 283 aa11.02□□□□□ -0.65
VPS4A-201ENST00000254950 FGL2Q14314 439 aa11.02□□□□□ -0.65
VPS4A-201ENST00000254950 GPR68Q15743 365 aa11.02□□□□□ -0.65
VPS4A-201ENST00000254950 ZNF605Q86T29 641 aa11.02□□□□□ -0.65
VPS4A-201ENST00000254950 GATAD2AQ86YP4 633 aa11.02□□□□□ -0.65
VPS4A-201ENST00000254950 SDR16C5Q8N3Y7 309 aa11.02□□□□□ -0.65
VPS4A-201ENST00000254950 SMYD1Q8NB12 490 aa11.02□□□□□ -0.65
VPS4A-201ENST00000254950 C7orf57Q8NEG2 295 aa11.02□□□□□ -0.65
VPS4A-201ENST00000254950 MIEF2Q96C03 454 aa11.02□□□□□ -0.65
VPS4A-201ENST00000254950 TRIM4Q9C037 500 aa11.02□□□□□ -0.65
VPS4A-201ENST00000254950 SLC6A16Q9GZN6 736 aa11.02□□□□□ -0.65
VPS4A-201ENST00000254950 PNPLA3Q9NST1 481 aa11.02□□□□□ -0.65
VPS4A-201ENST00000254950 LIPT1Q9Y234 373 aa11.02□□□□□ -0.65
VPS4A-201ENST00000254950 WDR45Q9Y484 360 aa11.02□□□□□ -0.65
VPS4A-201ENST00000254950 OR5K3A6NET4 321 aa11.02□□□□□ -0.65
VPS4A-201ENST00000254950 NOBOXO60393 691 aa11.02□□□□□ -0.65
VPS4A-201ENST00000254950 KLHL18O94889 574 aa11.02□□□□□ -0.65
VPS4A-201ENST00000254950 FBLP22087 321 aaKnown RBP11.02□□□□□ -0.65
VPS4A-201ENST00000254950 RPS7P62081 194 aaKnown RBP11.02□□□□□ -0.65
VPS4A-201ENST00000254950 ZNF730Q6ZMV8 503 aa11.02□□□□□ -0.65
VPS4A-201ENST00000254950 STX19Q8N4C7 294 aa11.02□□□□□ -0.65
VPS4A-201ENST00000254950 OR8J2Q8NGG1 315 aa11.02□□□□□ -0.65
VPS4A-201ENST00000254950 OR10Q1Q8NGQ4 319 aa11.02□□□□□ -0.65
VPS4A-201ENST00000254950 CIDECQ96AQ7 238 aaPredicted RBP11.02□□□□□ -0.65
VPS4A-201ENST00000254950 TCTN2Q96GX1 697 aa11.02□□□□□ -0.65
VPS4A-201ENST00000254950 PEX11GQ96HA9 241 aa11.02□□□□□ -0.65
VPS4A-201ENST00000254950 DPH2Q9BQC3 489 aaPredicted RBP11.02□□□□□ -0.65
VPS4A-201ENST00000254950 C1GALT1Q9NS00 363 aa11.02□□□□□ -0.65
VPS4A-201ENST00000254950 TSC2P49815 1807 aa11.02□□□□□ -0.65
VPS4A-201ENST00000254950 EI24O14681 340 aa11.01□□□□□ -0.65
VPS4A-201ENST00000254950 KHNYNO15037 678 aaKnown RBP11.01□□□□□ -0.65
VPS4A-201ENST00000254950 OR12D1P0DN82 309 aa11.01□□□□□ -0.65
VPS4A-201ENST00000254950 AQP4P55087 323 aa11.01□□□□□ -0.65
VPS4A-201ENST00000254950 TOP3AQ13472 1001 aaPredicted RBP11.01□□□□□ -0.65
VPS4A-201ENST00000254950 FAM180BQ6P0A1 224 aa11.01□□□□□ -0.65
VPS4A-201ENST00000254950 TMEM107Q6UX40 140 aa11.01□□□□□ -0.65
VPS4A-201ENST00000254950 IQCHQ86VS3 1027 aa11.01□□□□□ -0.65
VPS4A-201ENST00000254950 GALNT12Q8IXK2 581 aa11.01□□□□□ -0.65
VPS4A-201ENST00000254950 PACRGLQ8N7B6 248 aa11.01□□□□□ -0.65
VPS4A-201ENST00000254950 C19orf47Q8N9M1 422 aaKnown RBP11.01□□□□□ -0.65
VPS4A-201ENST00000254950 OR52L1Q8NGH7 329 aa11.01□□□□□ -0.65
VPS4A-201ENST00000254950 GFM1Q96RP9 751 aaKnown RBP11.01□□□□□ -0.65
VPS4A-201ENST00000254950 STRADBQ9C0K7 418 aa11.01□□□□□ -0.65
VPS4A-201ENST00000254950 AP1M2Q9Y6Q5 423 aa11.01□□□□□ -0.65
VPS4A-201ENST00000254950 PTGES3LE9PB15 166 aa11.01□□□□□ -0.65
VPS4A-201ENST00000254950 M0R3G1 203 aa11.01□□□□□ -0.65
VPS4A-201ENST00000254950 REM1O75628 298 aa11.01□□□□□ -0.65
VPS4A-201ENST00000254950 BMP7P18075 431 aa11.01□□□□□ -0.65
VPS4A-201ENST00000254950 GGT1P19440 569 aa11.01□□□□□ -0.65
VPS4A-201ENST00000254950 ATP5A1P25705 553 aaKnown RBP11.01□□□□□ -0.65
VPS4A-201ENST00000254950 RYKP34925 604 aa11.01□□□□□ -0.65
VPS4A-201ENST00000254950 BCL6P41182 706 aa11.01□□□□□ -0.65
VPS4A-201ENST00000254950 DAG1Q14118 895 aa11.01□□□□□ -0.65
VPS4A-201ENST00000254950 AGERQ15109 404 aa11.01□□□□□ -0.65
VPS4A-201ENST00000254950 TRIM61Q5EBN2 209 aa11.01□□□□□ -0.65
VPS4A-201ENST00000254950 ZNF311Q5JNZ3 666 aa11.01□□□□□ -0.65
VPS4A-201ENST00000254950 TSSK4Q6SA08 328 aa11.01□□□□□ -0.65
VPS4A-201ENST00000254950 ABHD11Q8NFV4 315 aa11.01□□□□□ -0.65
VPS4A-201ENST00000254950 CEP76Q8TAP6 659 aa11.01□□□□□ -0.65
VPS4A-201ENST00000254950 CD180Q99467 661 aa11.01□□□□□ -0.65
VPS4A-201ENST00000254950 TSC22D3Q99576 134 aa11.01□□□□□ -0.65
VPS4A-201ENST00000254950 SEMA6CQ9H3T2 930 aa11.01□□□□□ -0.65
VPS4A-201ENST00000254950 FTSJ1Q9UET6 329 aa11.01□□□□□ -0.65
VPS4A-201ENST00000254950 PCDHGA4Q9Y5G9 962 aa11.01□□□□□ -0.65
VPS4A-201ENST00000254950 PTPRZ1P23471 2315 aaPredicted RBP11.01□□□□□ -0.65
VPS4A-201ENST00000254950 A0A0A6YYC8 382 aaPredicted RBP11.01□□□□□ -0.65
VPS4A-201ENST00000254950 I3L1I5 382 aaPredicted RBP11.01□□□□□ -0.65
VPS4A-201ENST00000254950 YY2O15391 372 aa11.01□□□□□ -0.65
VPS4A-201ENST00000254950 CNOT3O75175 753 aaKnown RBP11.01□□□□□ -0.65
VPS4A-201ENST00000254950 RDH16O75452 317 aa11.01□□□□□ -0.65
VPS4A-201ENST00000254950 CCNB2O95067 398 aa11.01□□□□□ -0.65
VPS4A-201ENST00000254950 C9P02748 559 aa11.01□□□□□ -0.65
VPS4A-201ENST00000254950 ACPPP15309 386 aa11.01□□□□□ -0.65
VPS4A-201ENST00000254950 IL12BP29460 328 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms