RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 ALPPP05187 535 aa11.99□□□□□ -0.49
UPF1-208ENST00000600012 CD63P08962 238 aa11.99□□□□□ -0.49
UPF1-208ENST00000600012 HSD3B1P14060 373 aa11.99□□□□□ -0.49
UPF1-208ENST00000600012 HRH2P25021 359 aa11.99□□□□□ -0.49
UPF1-208ENST00000600012 HSD3B2P26439 372 aa11.99□□□□□ -0.49
UPF1-208ENST00000600012 OTX2P32243 289 aa11.99□□□□□ -0.49
UPF1-208ENST00000600012 GRK3P35626 688 aa11.99□□□□□ -0.49
UPF1-208ENST00000600012 DIO3P55073 304 aa11.99□□□□□ -0.49
UPF1-208ENST00000600012 ERVK-8P63133 956 aa11.99□□□□□ -0.49
UPF1-208ENST00000600012 PHEXP78562 749 aa11.99□□□□□ -0.49
UPF1-208ENST00000600012 ZNF33BQ06732 778 aa11.99□□□□□ -0.49
UPF1-208ENST00000600012 SSPNQ14714 243 aa11.99□□□□□ -0.49
UPF1-208ENST00000600012 RFTN2Q52LD8 501 aaPredicted RBP11.99□□□□□ -0.49
UPF1-208ENST00000600012 OGFOD2Q6N063 350 aa11.99□□□□□ -0.49
UPF1-208ENST00000600012 SPATA19Q7Z5L4 167 aa11.99□□□□□ -0.49
UPF1-208ENST00000600012 HOMEZQ8IX15 550 aa11.99□□□□□ -0.49
UPF1-208ENST00000600012 C19orf47Q8N9M1 422 aaKnown RBP11.99□□□□□ -0.49
UPF1-208ENST00000600012 CLEC1AQ8NC01 280 aa11.99□□□□□ -0.49
UPF1-208ENST00000600012 PRR7Q8TB68 274 aa11.99□□□□□ -0.49
UPF1-208ENST00000600012 APIPQ96GX9 242 aa11.99□□□□□ -0.49
UPF1-208ENST00000600012 FER1L6-AS2Q96M78 137 aa11.99□□□□□ -0.49
UPF1-208ENST00000600012 CCDC106Q9BWC9 280 aa11.99□□□□□ -0.49
UPF1-208ENST00000600012 RHBGQ9H310 441 aa11.99□□□□□ -0.49
UPF1-208ENST00000600012 OR51B5Q9H339 312 aa11.99□□□□□ -0.49
UPF1-208ENST00000600012 BRF2Q9HAW0 419 aa11.99□□□□□ -0.49
UPF1-208ENST00000600012 C1orf109Q9NX04 203 aa11.99□□□□□ -0.49
UPF1-208ENST00000600012 CNTRLQ7Z7A1 2325 aa11.99□□□□□ -0.49
UPF1-208ENST00000600012 FOXE1O00358 373 aaPredicted RBP11.98□□□□□ -0.49
UPF1-208ENST00000600012 SAP18O00422 153 aaKnown RBP11.98□□□□□ -0.49
UPF1-208ENST00000600012 PEX12O00623 359 aa11.98□□□□□ -0.49
UPF1-208ENST00000600012 KLF7O75840 302 aaPredicted RBP11.98□□□□□ -0.49
UPF1-208ENST00000600012 OR2B3O76000 313 aa11.98□□□□□ -0.49
UPF1-208ENST00000600012 FKBP9O95302 570 aa11.98□□□□□ -0.49
UPF1-208ENST00000600012 TBX6O95947 436 aaPredicted RBP11.98□□□□□ -0.49
UPF1-208ENST00000600012 SERPIND1P05546 499 aa11.98□□□□□ -0.49
UPF1-208ENST00000600012 EZRP15311 586 aaKnown RBP11.98□□□□□ -0.49
UPF1-208ENST00000600012 CD1EP15812 388 aa11.98□□□□□ -0.49
UPF1-208ENST00000600012 PRPH2P23942 346 aa11.98□□□□□ -0.49
UPF1-208ENST00000600012 FOLR3P41439 243 aa11.98□□□□□ -0.49
UPF1-208ENST00000600012 PIK3CBP42338 1070 aa11.98□□□□□ -0.49
UPF1-208ENST00000600012 NME5P56597 212 aa11.98□□□□□ -0.49
UPF1-208ENST00000600012 STX1BP61266 288 aa11.98□□□□□ -0.49
UPF1-208ENST00000600012 EMX2Q04743 252 aa11.98□□□□□ -0.49
UPF1-208ENST00000600012 KLF10Q13118 480 aa11.98□□□□□ -0.49
UPF1-208ENST00000600012 RAPSNQ13702 412 aa11.98□□□□□ -0.49
UPF1-208ENST00000600012 SQLEQ14534 574 aa11.98□□□□□ -0.49
UPF1-208ENST00000600012 MYBPC3Q14896 1274 aa11.98□□□□□ -0.49
UPF1-208ENST00000600012 ZIC1Q15915 447 aa11.98□□□□□ -0.49
UPF1-208ENST00000600012 SPRED3Q2MJR0 410 aa11.98□□□□□ -0.49
UPF1-208ENST00000600012 DCAF10Q5QP82 559 aa11.98□□□□□ -0.49
UPF1-208ENST00000600012 C10orf62Q5T681 223 aaPredicted RBP11.98□□□□□ -0.49
UPF1-208ENST00000600012 IL23RQ5VWK5 629 aa11.98□□□□□ -0.49
UPF1-208ENST00000600012 MLIPQ5VWP3 458 aa11.98□□□□□ -0.49
UPF1-208ENST00000600012 FAM91A1Q658Y4 838 aa11.98□□□□□ -0.49
UPF1-208ENST00000600012 RHBDD2Q6NTF9 364 aa11.98□□□□□ -0.49
UPF1-208ENST00000600012 CCDC121Q6ZUS5 278 aa11.98□□□□□ -0.49
UPF1-208ENST00000600012 MAMDC2Q7Z304 686 aaPredicted RBP11.98□□□□□ -0.49
UPF1-208ENST00000600012 CPSF7Q8N684 471 aaKnown RBP11.98□□□□□ -0.49
UPF1-208ENST00000600012 MFSD9Q8NBP5 474 aa11.98□□□□□ -0.49
UPF1-208ENST00000600012 PROKR1Q8TCW9 393 aa11.98□□□□□ -0.49
UPF1-208ENST00000600012 SNRNP40Q96DI7 357 aaKnown RBP11.98□□□□□ -0.49
UPF1-208ENST00000600012 CMTM7Q96FZ5 175 aa11.98□□□□□ -0.49
UPF1-208ENST00000600012 TCTN2Q96GX1 697 aa11.98□□□□□ -0.49
UPF1-208ENST00000600012 EBPLQ9BY08 206 aa11.98□□□□□ -0.49
UPF1-208ENST00000600012 MS4A8Q9BY19 250 aa11.98□□□□□ -0.49
UPF1-208ENST00000600012 MRPL1Q9BYD6 325 aaKnown RBP11.98□□□□□ -0.49
UPF1-208ENST00000600012 PITHD1Q9GZP4 211 aaPredicted RBP11.98□□□□□ -0.49
UPF1-208ENST00000600012 CHRNA10Q9GZZ6 450 aa11.98□□□□□ -0.49
UPF1-208ENST00000600012 ARL8BQ9NVJ2 186 aa11.98□□□□□ -0.49
UPF1-208ENST00000600012 AIG1Q9NVV5 245 aa11.98□□□□□ -0.49
UPF1-208ENST00000600012 VPS29Q9UBQ0 182 aa11.98□□□□□ -0.49
UPF1-208ENST00000600012 GPN3Q9UHW5 284 aaPredicted RBP11.98□□□□□ -0.49
UPF1-208ENST00000600012 SRPK3Q9UPE1 567 aa11.98□□□□□ -0.49
UPF1-208ENST00000600012 B3GNT3Q9Y2A9 372 aa11.98□□□□□ -0.49
UPF1-208ENST00000600012 TSC22D4Q9Y3Q8 395 aa11.98□□□□□ -0.49
UPF1-208ENST00000600012 CAPN7Q9Y6W3 813 aa11.98□□□□□ -0.49
UPF1-208ENST00000600012 POLEQ07864 2286 aa11.98□□□□□ -0.49
UPF1-208ENST00000600012 DOCK10Q96BY6 2186 aa11.98□□□□□ -0.49
UPF1-208ENST00000600012 CROCCQ5TZA2 2017 aa11.98□□□□□ -0.49
UPF1-208ENST00000600012 DIDO1Q9BTC0 2240 aaKnown RBP11.97□□□□□ -0.49
UPF1-208ENST00000600012 A0A0J9YVX5 310 aa11.97□□□□□ -0.49
UPF1-208ENST00000600012 CAPN14A8MX76 684 aa11.97□□□□□ -0.49
UPF1-208ENST00000600012 NPIPB8E9PQR5 432 aa11.97□□□□□ -0.49
UPF1-208ENST00000600012 CTSVO60911 334 aa11.97□□□□□ -0.49
UPF1-208ENST00000600012 CBX6O95503 412 aa11.97□□□□□ -0.49
UPF1-208ENST00000600012 PIK3R1P27986 724 aa11.97□□□□□ -0.49
UPF1-208ENST00000600012 SERPINB1P30740 379 aa11.97□□□□□ -0.49
UPF1-208ENST00000600012 ATP4BP51164 291 aa11.97□□□□□ -0.49
UPF1-208ENST00000600012 RPS15AP62244 130 aaKnown RBP11.97□□□□□ -0.49
UPF1-208ENST00000600012 DCDP81605 110 aaKnown RBP11.97□□□□□ -0.49
UPF1-208ENST00000600012 TBL3Q12788 808 aaKnown RBP11.97□□□□□ -0.49
UPF1-208ENST00000600012 KIAA0040Q15053 153 aa11.97□□□□□ -0.49
UPF1-208ENST00000600012 PLEKHN1Q494U1 663 aaPredicted RBP11.97□□□□□ -0.49
UPF1-208ENST00000600012 PAOXQ6QHF9 649 aa11.97□□□□□ -0.49
UPF1-208ENST00000600012 IGFL3Q6UXB1 125 aa11.97□□□□□ -0.49
UPF1-208ENST00000600012 RIPOR1Q6ZS17 1223 aa11.97□□□□□ -0.49
UPF1-208ENST00000600012 GK5Q6ZS86 529 aa11.97□□□□□ -0.49
UPF1-208ENST00000600012 RNF44Q7L0R7 432 aa11.97□□□□□ -0.49
UPF1-208ENST00000600012 GALNT16Q8N428 558 aa11.97□□□□□ -0.49
UPF1-208ENST00000600012 LIX1Q8N485 282 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms