RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 SIM2Q14190 667 aaPredicted RBP13.74□□□□□ -0.21
VRK3-217ENST00000599538 ALG11Q2TAA5 492 aa13.74□□□□□ -0.21
VRK3-217ENST00000599538 ZNF750Q32MQ0 723 aa13.74□□□□□ -0.21
VRK3-217ENST00000599538 RPS26P11Q5JNZ5 115 aaPredicted RBP13.74□□□□□ -0.21
VRK3-217ENST00000599538 KDM4DQ6B0I6 523 aa13.74□□□□□ -0.21
VRK3-217ENST00000599538 CEACAM20Q6UY09 585 aa13.74□□□□□ -0.21
VRK3-217ENST00000599538 TRIM73Q86UV7 250 aa13.74□□□□□ -0.21
VRK3-217ENST00000599538 NRROSQ86YC3 692 aa13.74□□□□□ -0.21
VRK3-217ENST00000599538 CHDHQ8NE62 594 aaPredicted RBP13.74□□□□□ -0.21
VRK3-217ENST00000599538 ZNF555Q8NEP9 628 aa13.74□□□□□ -0.21
VRK3-217ENST00000599538 ADAMTS16Q8TE57 1224 aa13.74□□□□□ -0.21
VRK3-217ENST00000599538 OR5P2Q8WZ92 322 aa13.74□□□□□ -0.21
VRK3-217ENST00000599538 RAB8BQ92930 207 aa13.74□□□□□ -0.21
VRK3-217ENST00000599538 NPLQ9BXD5 320 aaPredicted RBP13.74□□□□□ -0.21
VRK3-217ENST00000599538 NLNQ9BYT8 704 aa13.74□□□□□ -0.21
VRK3-217ENST00000599538 GABARAPL1Q9H0R8 117 aa13.74□□□□□ -0.21
VRK3-217ENST00000599538 TCEAL2Q9H3H9 227 aaPredicted RBP13.74□□□□□ -0.21
VRK3-217ENST00000599538 C6orf106Q9H6K1 298 aaPredicted RBP13.74□□□□□ -0.21
VRK3-217ENST00000599538 PRDM7Q9NQW5 492 aa13.74□□□□□ -0.21
VRK3-217ENST00000599538 APOBEC3BQ9UH17 382 aaKnown RBP13.74□□□□□ -0.21
VRK3-217ENST00000599538 BAG5Q9UL15 447 aa13.74□□□□□ -0.21
VRK3-217ENST00000599538 MMP17Q9ULZ9 603 aa13.74□□□□□ -0.21
VRK3-217ENST00000599538 J3KTA2 159 aa13.73□□□□□ -0.21
VRK3-217ENST00000599538 PGRMC2O15173 223 aa13.73□□□□□ -0.21
VRK3-217ENST00000599538 KIF1CO43896 1103 aaKnown RBP13.73□□□□□ -0.21
VRK3-217ENST00000599538 TBX19O60806 448 aa13.73□□□□□ -0.21
VRK3-217ENST00000599538 PRAMEF10O60809 474 aa13.73□□□□□ -0.21
VRK3-217ENST00000599538 ALPPL2P10696 532 aa13.73□□□□□ -0.21
VRK3-217ENST00000599538 HOXB6P17509 224 aaKnown RBP13.73□□□□□ -0.21
VRK3-217ENST00000599538 PCBP3P57721 371 aaKnown RBP13.73□□□□□ -0.21
VRK3-217ENST00000599538 DSTNP60981 165 aa13.73□□□□□ -0.21
VRK3-217ENST00000599538 RAB8AP61006 207 aa13.73□□□□□ -0.21
VRK3-217ENST00000599538 ISL1P61371 349 aa13.73□□□□□ -0.21
VRK3-217ENST00000599538 RBBP4Q09028 425 aa13.73□□□□□ -0.21
VRK3-217ENST00000599538 PMS2P3Q13401 168 aa13.73□□□□□ -0.21
VRK3-217ENST00000599538 RAPSNQ13702 412 aa13.73□□□□□ -0.21
VRK3-217ENST00000599538 ADPRMQ3LIE5 342 aa13.73□□□□□ -0.21
VRK3-217ENST00000599538 SAXO2Q658L1 398 aa13.73□□□□□ -0.21
VRK3-217ENST00000599538 ZNF425Q6IV72 752 aa13.73□□□□□ -0.21
VRK3-217ENST00000599538 SLC44A2Q8IWA5 706 aaPredicted RBP13.73□□□□□ -0.21
VRK3-217ENST00000599538 DENND6BQ8NEG7 585 aa13.73□□□□□ -0.21
VRK3-217ENST00000599538 FAM3CQ92520 227 aa13.73□□□□□ -0.21
VRK3-217ENST00000599538 QRFPRQ96P65 431 aa13.73□□□□□ -0.21
VRK3-217ENST00000599538 SERHL2Q9H4I8 314 aa13.73□□□□□ -0.21
VRK3-217ENST00000599538 LIN28AQ9H9Z2 209 aaKnown RBP13.73□□□□□ -0.21
VRK3-217ENST00000599538 TUBA8Q9NY65 449 aaPredicted RBP13.73□□□□□ -0.21
VRK3-217ENST00000599538 KLF15Q9UIH9 416 aa13.73□□□□□ -0.21
VRK3-217ENST00000599538 PADI2Q9Y2J8 665 aa13.73□□□□□ -0.21
VRK3-217ENST00000599538 TESMINQ9Y4I5 508 aa13.73□□□□□ -0.21
VRK3-217ENST00000599538 ATG4BQ9Y4P1 393 aa13.73□□□□□ -0.21
VRK3-217ENST00000599538 SLCO1B1Q9Y6L6 691 aa13.73□□□□□ -0.21
VRK3-217ENST00000599538 AP1M2Q9Y6Q5 423 aa13.73□□□□□ -0.21
VRK3-217ENST00000599538 COLEC10Q9Y6Z7 277 aa13.73□□□□□ -0.21
VRK3-217ENST00000599538 A6NCN8 305 aa13.73□□□□□ -0.21
VRK3-217ENST00000599538 AHCYL1O43865 530 aa13.73□□□□□ -0.21
VRK3-217ENST00000599538 KRT75O95678 551 aa13.73□□□□□ -0.21
VRK3-217ENST00000599538 RECKO95980 971 aa13.73□□□□□ -0.21
VRK3-217ENST00000599538 SLC5A2P31639 672 aa13.73□□□□□ -0.21
VRK3-217ENST00000599538 GRK3P35626 688 aa13.73□□□□□ -0.21
VRK3-217ENST00000599538 CLK3P49761 638 aaKnown RBP13.73□□□□□ -0.21
VRK3-217ENST00000599538 HLCSP50747 726 aa13.73□□□□□ -0.21
VRK3-217ENST00000599538 SRP54P61011 504 aaKnown RBP13.73□□□□□ -0.21
VRK3-217ENST00000599538 DUSP2Q05923 314 aa13.73□□□□□ -0.21
VRK3-217ENST00000599538 PIGFQ07326 219 aa13.73□□□□□ -0.21
VRK3-217ENST00000599538 SLAMF1Q13291 335 aa13.73□□□□□ -0.21
VRK3-217ENST00000599538 BIRC2Q13490 618 aa13.73□□□□□ -0.21
VRK3-217ENST00000599538 ZNF542PQ5EBM4 170 aa13.73□□□□□ -0.21
VRK3-217ENST00000599538 TOR1AIP1Q5JTV8 583 aa13.73□□□□□ -0.21
VRK3-217ENST00000599538 EOGTQ5NDL2 527 aa13.73□□□□□ -0.21
VRK3-217ENST00000599538 ABHD17CQ6PCB6 329 aa13.73□□□□□ -0.21
VRK3-217ENST00000599538 BORAQ6PGQ7 559 aa13.73□□□□□ -0.21
VRK3-217ENST00000599538 Q6ZSR6 202 aa13.73□□□□□ -0.21
VRK3-217ENST00000599538 SLC22A18ASQ8N1D0 253 aa13.73□□□□□ -0.21
VRK3-217ENST00000599538 GALNT15Q8N3T1 639 aa13.73□□□□□ -0.21
VRK3-217ENST00000599538 PIK3C3Q8NEB9 887 aa13.73□□□□□ -0.21
VRK3-217ENST00000599538 OR13H1Q8NG92 308 aa13.73□□□□□ -0.21
VRK3-217ENST00000599538 NEURL3Q96EH8 262 aa13.73□□□□□ -0.21
VRK3-217ENST00000599538 ABHD8Q96I13 439 aa13.73□□□□□ -0.21
VRK3-217ENST00000599538 ADNPQ9H2P0 1102 aa13.73□□□□□ -0.21
VRK3-217ENST00000599538 GLIPR2Q9H4G4 154 aa13.73□□□□□ -0.21
VRK3-217ENST00000599538 RIBC2Q9H4K1 309 aa13.73□□□□□ -0.21
VRK3-217ENST00000599538 REEP1Q9H902 201 aa13.73□□□□□ -0.21
VRK3-217ENST00000599538 ADAM29Q9UKF5 820 aa13.73□□□□□ -0.21
VRK3-217ENST00000599538 RAB23Q9ULC3 237 aa13.73□□□□□ -0.21
VRK3-217ENST00000599538 PCDHGA4Q9Y5G9 962 aa13.73□□□□□ -0.21
VRK3-217ENST00000599538 A0A1W2PR48 441 aa13.72□□□□□ -0.21
VRK3-217ENST00000599538 APBB3O95704 486 aa13.72□□□□□ -0.21
VRK3-217ENST00000599538 IGHV4-34P06331 123 aa13.72□□□□□ -0.21
VRK3-217ENST00000599538 HIST1H1TP22492 207 aaPredicted RBP13.72□□□□□ -0.21
VRK3-217ENST00000599538 CRHBPP24387 322 aa13.72□□□□□ -0.21
VRK3-217ENST00000599538 CERS1P27544 350 aa13.72□□□□□ -0.21
VRK3-217ENST00000599538 HTR1BP28222 390 aa13.72□□□□□ -0.21
VRK3-217ENST00000599538 RAD23AP54725 363 aa13.72□□□□□ -0.21
VRK3-217ENST00000599538 TPD52P55327 224 aaPredicted RBP13.72□□□□□ -0.21
VRK3-217ENST00000599538 ABATP80404 500 aa13.72□□□□□ -0.21
VRK3-217ENST00000599538 EPS8Q12929 822 aa13.72□□□□□ -0.21
VRK3-217ENST00000599538 FOXD4Q12950 439 aaPredicted RBP13.72□□□□□ -0.21
VRK3-217ENST00000599538 MAPK11Q15759 364 aa13.72□□□□□ -0.21
VRK3-217ENST00000599538 DUSP7Q16829 419 aa13.72□□□□□ -0.21
VRK3-217ENST00000599538 ZNF630Q2M218 657 aaPredicted RBP13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms