RNA–Protein interactions for RNA: ENST00000593706.3

PNKP-202, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 849 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-202ENST00000593706 CCDC71Q8IV32 467 aaPredicted RBP13.7□□□□□ -0.22
PNKP-202ENST00000593706 SCUBE1Q8IWY4 988 aa13.7□□□□□ -0.22
PNKP-202ENST00000593706 SPATA6LQ8N4H0 392 aa13.7□□□□□ -0.22
PNKP-202ENST00000593706 RPRMLQ8N4K4 120 aa13.7□□□□□ -0.22
PNKP-202ENST00000593706 TTLQ8NG68 377 aa13.7□□□□□ -0.22
PNKP-202ENST00000593706 LILRB4Q8NHJ6 448 aa13.7□□□□□ -0.22
PNKP-202ENST00000593706 FBF1Q8TES7 1133 aa13.7□□□□□ -0.22
PNKP-202ENST00000593706 CREB3L4Q8TEY5 395 aa13.7□□□□□ -0.22
PNKP-202ENST00000593706 SREK1Q8WXA9 508 aaKnown RBP13.7□□□□□ -0.22
PNKP-202ENST00000593706 RHBDF1Q96CC6 855 aa13.7□□□□□ -0.22
PNKP-202ENST00000593706 SMIM10Q96HG1 83 aa13.7□□□□□ -0.22
PNKP-202ENST00000593706 SEC16BQ96JE7 1060 aa13.7□□□□□ -0.22
PNKP-202ENST00000593706 UCK2Q9BZX2 261 aa13.7□□□□□ -0.22
PNKP-202ENST00000593706 ADAP2Q9NPF8 381 aa13.7□□□□□ -0.22
PNKP-202ENST00000593706 PLSCR2Q9NRY7 297 aa13.7□□□□□ -0.22
PNKP-202ENST00000593706 CTNNAL1Q9UBT7 734 aa13.7□□□□□ -0.22
PNKP-202ENST00000593706 ZNF223Q9UK11 482 aaPredicted RBP13.7□□□□□ -0.22
PNKP-202ENST00000593706 CLCA3PQ9Y6N3 262 aa13.7□□□□□ -0.22
PNKP-202ENST00000593706 EXPH5Q8NEV8 1989 aa13.7□□□□□ -0.22
PNKP-202ENST00000593706 ABCA4P78363 2273 aa13.7□□□□□ -0.22
PNKP-202ENST00000593706 ACANP16112 2415 aa13.69□□□□□ -0.22
PNKP-202ENST00000593706 HMX2A2RU54 273 aa13.69□□□□□ -0.22
PNKP-202ENST00000593706 NPIPA2E9PIF3 369 aa13.69□□□□□ -0.22
PNKP-202ENST00000593706 NPIPA3F8WFD2 350 aa13.69□□□□□ -0.22
PNKP-202ENST00000593706 H2AFYO75367 372 aaKnown RBP13.69□□□□□ -0.22
PNKP-202ENST00000593706 ZFAND5O76080 213 aa13.69□□□□□ -0.22
PNKP-202ENST00000593706 IFNA16P05015 189 aa13.69□□□□□ -0.22
PNKP-202ENST00000593706 SLC35E2BP0CK96 405 aa13.69□□□□□ -0.22
PNKP-202ENST00000593706 CD1DP15813 335 aa13.69□□□□□ -0.22
PNKP-202ENST00000593706 GNAZP19086 355 aa13.69□□□□□ -0.22
PNKP-202ENST00000593706 HNRNPH1P31943 449 aaKnown RBP13.69□□□□□ -0.22
PNKP-202ENST00000593706 GGT5P36269 586 aa13.69□□□□□ -0.22
PNKP-202ENST00000593706 GMPRP36959 345 aa13.69□□□□□ -0.22
PNKP-202ENST00000593706 ART1P52961 327 aa13.69□□□□□ -0.22
PNKP-202ENST00000593706 RAB38P57729 211 aa13.69□□□□□ -0.22
PNKP-202ENST00000593706 NUP107P57740 925 aa13.69□□□□□ -0.22
PNKP-202ENST00000593706 RAB10P61026 200 aa13.69□□□□□ -0.22
PNKP-202ENST00000593706 TFF3Q07654 80 aa13.69□□□□□ -0.22
PNKP-202ENST00000593706 BMPR2Q13873 1038 aa13.69□□□□□ -0.22
PNKP-202ENST00000593706 SLBPQ14493 270 aaKnown RBP eCLIP13.69□□□□□ -0.22
PNKP-202ENST00000593706 TGFBIQ15582 683 aa13.69□□□□□ -0.22
PNKP-202ENST00000593706 OR4D1Q15615 310 aa13.69□□□□□ -0.22
PNKP-202ENST00000593706 TRIM40Q6P9F5 258 aa13.69□□□□□ -0.22
PNKP-202ENST00000593706 IL20RBQ6UXL0 311 aa13.69□□□□□ -0.22
PNKP-202ENST00000593706 TMIGD1Q6UXZ0 262 aa13.69□□□□□ -0.22
PNKP-202ENST00000593706 C16orf47Q6ZP98 133 aaPredicted RBP13.69□□□□□ -0.22
PNKP-202ENST00000593706 GK5Q6ZS86 529 aa13.69□□□□□ -0.22
PNKP-202ENST00000593706 CLNKQ7Z7G1 428 aa13.69□□□□□ -0.22
PNKP-202ENST00000593706 SLC22A16Q86VW1 577 aa13.69□□□□□ -0.22
PNKP-202ENST00000593706 GPALPP1Q8IXQ4 340 aa13.69□□□□□ -0.22
PNKP-202ENST00000593706 OR2M7Q8NG81 312 aa13.69□□□□□ -0.22
PNKP-202ENST00000593706 TSPAN17Q96FV3 270 aa13.69□□□□□ -0.22
PNKP-202ENST00000593706 TMEM79Q9BSE2 394 aa13.69□□□□□ -0.22
PNKP-202ENST00000593706 NPLQ9BXD5 320 aaPredicted RBP13.69□□□□□ -0.22
PNKP-202ENST00000593706 AICDAQ9GZX7 198 aa13.69□□□□□ -0.22
PNKP-202ENST00000593706 COPS7BQ9H9Q2 264 aaPredicted RBP13.69□□□□□ -0.22
PNKP-202ENST00000593706 LIN28AQ9H9Z2 209 aaKnown RBP13.69□□□□□ -0.22
PNKP-202ENST00000593706 DEPPQ9NTK1 212 aa13.69□□□□□ -0.22
PNKP-202ENST00000593706 DMGDHQ9UI17 866 aaKnown RBP13.69□□□□□ -0.22
PNKP-202ENST00000593706 HRH3Q9Y5N1 445 aa13.69□□□□□ -0.22
PNKP-202ENST00000593706 SYNDIG1LA6NDD5 238 aa13.68□□□□□ -0.22
PNKP-202ENST00000593706 FIGNL2A6NMB9 653 aa13.68□□□□□ -0.22
PNKP-202ENST00000593706 G3V3Y1 287 aa13.68□□□□□ -0.22
PNKP-202ENST00000593706 TGFBR3LH3BV60 316 aa13.68□□□□□ -0.22
PNKP-202ENST00000593706 TAPBPO15533 448 aa13.68□□□□□ -0.22
PNKP-202ENST00000593706 PRKNO60260 465 aaPredicted RBP13.68□□□□□ -0.22
PNKP-202ENST00000593706 TOXO94900 526 aa13.68□□□□□ -0.22
PNKP-202ENST00000593706 OR6B1O95007 311 aa13.68□□□□□ -0.22
PNKP-202ENST00000593706 ZWINTO95229 277 aa13.68□□□□□ -0.22
PNKP-202ENST00000593706 CCDC166P0CW27 439 aa13.68□□□□□ -0.22
PNKP-202ENST00000593706 STMN1P16949 149 aa13.68□□□□□ -0.22
PNKP-202ENST00000593706 HPDP32754 393 aaPredicted RBP13.68□□□□□ -0.22
PNKP-202ENST00000593706 SOX3P41225 446 aa13.68□□□□□ -0.22
PNKP-202ENST00000593706 HNRNPFP52597 415 aaKnown RBP13.68□□□□□ -0.22
PNKP-202ENST00000593706 PLA2G16P53816 162 aa13.68□□□□□ -0.22
PNKP-202ENST00000593706 DLG1Q12959 904 aa13.68□□□□□ -0.22
PNKP-202ENST00000593706 RUNX2Q13950 521 aa13.68□□□□□ -0.22
PNKP-202ENST00000593706 ELAVL1Q15717 326 aaKnown RBP13.68□□□□□ -0.22
PNKP-202ENST00000593706 EMC4Q5J8M3 183 aa13.68□□□□□ -0.22
PNKP-202ENST00000593706 CDKL4Q5MAI5 379 aa13.68□□□□□ -0.22
PNKP-202ENST00000593706 GRTP1Q5TC63 336 aa13.68□□□□□ -0.22
PNKP-202ENST00000593706 CES4AQ5XG92 561 aa13.68□□□□□ -0.22
PNKP-202ENST00000593706 HSDL2Q6YN16 418 aa13.68□□□□□ -0.22
PNKP-202ENST00000593706 RGS9BPQ6ZS82 235 aa13.68□□□□□ -0.22
PNKP-202ENST00000593706 CMC1Q7Z7K0 106 aa13.68□□□□□ -0.22
PNKP-202ENST00000593706 CTAGE3PQ8IX95 158 aa13.68□□□□□ -0.22
PNKP-202ENST00000593706 DMRTC2Q8IXT2 367 aaPredicted RBP13.68□□□□□ -0.22
PNKP-202ENST00000593706 ZNF595Q8IYB9 648 aa13.68□□□□□ -0.22
PNKP-202ENST00000593706 KRT78Q8N1N4 520 aa13.68□□□□□ -0.22
PNKP-202ENST00000593706 TMEM132CQ8N3T6 1108 aa13.68□□□□□ -0.22
PNKP-202ENST00000593706 PPM1NQ8N819 430 aa13.68□□□□□ -0.22
PNKP-202ENST00000593706 TMEM52Q8NDY8 209 aa13.68□□□□□ -0.22
PNKP-202ENST00000593706 OR5M9Q8NGP3 310 aa13.68□□□□□ -0.22
PNKP-202ENST00000593706 OR10Q1Q8NGQ4 319 aa13.68□□□□□ -0.22
PNKP-202ENST00000593706 MS4A6EQ96DS6 147 aa13.68□□□□□ -0.22
PNKP-202ENST00000593706 SMC6Q96SB8 1091 aa13.68□□□□□ -0.22
PNKP-202ENST00000593706 FUT8Q9BYC5 575 aa13.68□□□□□ -0.22
PNKP-202ENST00000593706 TTTY12Q9BZ98 90 aa13.68□□□□□ -0.22
PNKP-202ENST00000593706 PRM3Q9NNZ6 103 aa13.68□□□□□ -0.22
PNKP-202ENST00000593706 PNPLA3Q9NST1 481 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms