RNA–Protein interactions for RNA: ENST00000581383.1

SMCHD1-205, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 806 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-205ENST00000581383 TEX264Q9Y6I9 313 aa3.93□□□□□ -1.78
SMCHD1-205ENST00000581383 SMAD5-AS1Q9Y6J3 95 aa3.93□□□□□ -1.78
SMCHD1-205ENST00000581383 SNED1Q8TER0 1413 aa3.93□□□□□ -1.78
SMCHD1-205ENST00000581383 DHX29Q7Z478 1369 aaKnown RBP3.92□□□□□ -1.78
SMCHD1-205ENST00000581383 SHISA7A6NL88 538 aa3.92□□□□□ -1.78
SMCHD1-205ENST00000581383 KPNA7A9QM74 516 aa3.92□□□□□ -1.78
SMCHD1-205ENST00000581383 TLR4O00206 839 aa3.92□□□□□ -1.78
SMCHD1-205ENST00000581383 TFECO14948 347 aaPredicted RBP3.92□□□□□ -1.78
SMCHD1-205ENST00000581383 ATP6V1G1O75348 118 aa3.92□□□□□ -1.78
SMCHD1-205ENST00000581383 MTRF1O75570 445 aaKnown RBP3.92□□□□□ -1.78
SMCHD1-205ENST00000581383 NXPH4O95158 308 aa3.92□□□□□ -1.78
SMCHD1-205ENST00000581383 CYP3A5P20815 502 aa3.92□□□□□ -1.78
SMCHD1-205ENST00000581383 STIP1P31948 543 aaKnown RBP3.92□□□□□ -1.78
SMCHD1-205ENST00000581383 CCR4P51679 360 aa3.92□□□□□ -1.78
SMCHD1-205ENST00000581383 GSCP56915 257 aaPredicted RBP3.92□□□□□ -1.78
SMCHD1-205ENST00000581383 ERVK-16P61578 105 aa3.92□□□□□ -1.78
SMCHD1-205ENST00000581383 CALCOCO2Q13137 446 aa3.92□□□□□ -1.78
SMCHD1-205ENST00000581383 GCKRQ14397 625 aa3.92□□□□□ -1.78
SMCHD1-205ENST00000581383 KRT31Q15323 416 aa3.92□□□□□ -1.78
SMCHD1-205ENST00000581383 ETFRF1Q6IPR1 90 aa3.92□□□□□ -1.78
SMCHD1-205ENST00000581383 CAPN13Q6MZZ7 669 aaPredicted RBP3.92□□□□□ -1.78
SMCHD1-205ENST00000581383 B3GLCTQ6Y288 498 aa3.92□□□□□ -1.78
SMCHD1-205ENST00000581383 C3P1Q6ZMU1 363 aa3.92□□□□□ -1.78
SMCHD1-205ENST00000581383 RABEPKQ7Z6M1 372 aa3.92□□□□□ -1.78
SMCHD1-205ENST00000581383 OR4L1Q8NH43 312 aa3.92□□□□□ -1.78
SMCHD1-205ENST00000581383 FAM213AQ9BRX8 229 aa3.92□□□□□ -1.78
SMCHD1-205ENST00000581383 NUSAP1Q9BXS6 441 aaKnown RBP3.92□□□□□ -1.78
SMCHD1-205ENST00000581383 DCLRE1BQ9H816 532 aa3.92□□□□□ -1.78
SMCHD1-205ENST00000581383 MARCH7Q9H992 704 aa3.92□□□□□ -1.78
SMCHD1-205ENST00000581383 MED17Q9NVC6 651 aa3.92□□□□□ -1.78
SMCHD1-205ENST00000581383 NDE1Q9NXR1 346 aa3.92□□□□□ -1.78
SMCHD1-205ENST00000581383 NUDT4Q9NZJ9 180 aa3.92□□□□□ -1.78
SMCHD1-205ENST00000581383 HMG20BQ9P0W2 317 aa3.92□□□□□ -1.78
SMCHD1-205ENST00000581383 TEKT2Q9UIF3 430 aa3.92□□□□□ -1.78
SMCHD1-205ENST00000581383 MOSPD1Q9UJG1 213 aa3.92□□□□□ -1.78
SMCHD1-205ENST00000581383 IGHV3-20A0A0C4DH32 117 aa3.91□□□□□ -1.78
SMCHD1-205ENST00000581383 SLC28A1O00337 649 aa3.91□□□□□ -1.78
SMCHD1-205ENST00000581383 OGTO15294 1046 aa3.91□□□□□ -1.78
SMCHD1-205ENST00000581383 INPP4BO15327 924 aa3.91□□□□□ -1.78
SMCHD1-205ENST00000581383 TNFSF12O43508 249 aa3.91□□□□□ -1.78
SMCHD1-205ENST00000581383 ZBTB14O43829 449 aa3.91□□□□□ -1.78
SMCHD1-205ENST00000581383 IDH3BO43837 385 aa3.91□□□□□ -1.78
SMCHD1-205ENST00000581383 PRDM1O75626 825 aa3.91□□□□□ -1.78
SMCHD1-205ENST00000581383 BCAS2O75934 225 aaPredicted RBP3.91□□□□□ -1.78
SMCHD1-205ENST00000581383 MMP10P09238 476 aa3.91□□□□□ -1.78
SMCHD1-205ENST00000581383 STMN1P16949 149 aa3.91□□□□□ -1.78
SMCHD1-205ENST00000581383 GPX3P22352 226 aa3.91□□□□□ -1.78
SMCHD1-205ENST00000581383 NDST2P52849 883 aa3.91□□□□□ -1.78
SMCHD1-205ENST00000581383 KIAA0141Q14154 515 aaPredicted RBP3.91□□□□□ -1.78
SMCHD1-205ENST00000581383 HEPACAMQ14CZ8 416 aa3.91□□□□□ -1.78
SMCHD1-205ENST00000581383 CDC37Q16543 378 aaPredicted RBP3.91□□□□□ -1.78
SMCHD1-205ENST00000581383 RFTN2Q52LD8 501 aaPredicted RBP3.91□□□□□ -1.78
SMCHD1-205ENST00000581383 LCE1FQ5T754 118 aa3.91□□□□□ -1.78
SMCHD1-205ENST00000581383 TRIM65Q6PJ69 517 aa3.91□□□□□ -1.78
SMCHD1-205ENST00000581383 ZNF497Q6ZNH5 498 aa3.91□□□□□ -1.78
SMCHD1-205ENST00000581383 GDPGP1Q6ZNW5 385 aa3.91□□□□□ -1.78
SMCHD1-205ENST00000581383 KRTAP5-2Q701N4 177 aa3.91□□□□□ -1.78
SMCHD1-205ENST00000581383 RTL3Q8N8U3 475 aaKnown RBP3.91□□□□□ -1.78
SMCHD1-205ENST00000581383 C8orf46Q8TAG6 207 aa3.91□□□□□ -1.78
SMCHD1-205ENST00000581383 LIPHQ8WWY8 451 aa3.91□□□□□ -1.78
SMCHD1-205ENST00000581383 GTF3AQ92664 365 aaKnown RBP3.91□□□□□ -1.78
SMCHD1-205ENST00000581383 DTD2Q96FN9 168 aa3.91□□□□□ -1.78
SMCHD1-205ENST00000581383 EEF2KMTQ96G04 330 aa3.91□□□□□ -1.78
SMCHD1-205ENST00000581383 PCED1BQ96HM7 432 aa3.91□□□□□ -1.78
SMCHD1-205ENST00000581383 C18orf12Q96KH6 178 aa3.91□□□□□ -1.78
SMCHD1-205ENST00000581383 IWS1Q96ST2 819 aa3.91□□□□□ -1.78
SMCHD1-205ENST00000581383 AGPAT1Q99943 283 aa3.91□□□□□ -1.78
SMCHD1-205ENST00000581383 MCRIP2Q9BUT9 160 aaKnown RBP3.91□□□□□ -1.78
SMCHD1-205ENST00000581383 ABCG4Q9H172 646 aa3.91□□□□□ -1.78
SMCHD1-205ENST00000581383 DPEP3Q9H4B8 488 aa3.91□□□□□ -1.78
SMCHD1-205ENST00000581383 PLEKHA3Q9HB20 300 aa3.91□□□□□ -1.78
SMCHD1-205ENST00000581383 PRMT8Q9NR22 394 aaPredicted RBP3.91□□□□□ -1.78
SMCHD1-205ENST00000581383 DDX28Q9NUL7 540 aaKnown RBP3.91□□□□□ -1.78
SMCHD1-205ENST00000581383 NDUFA13Q9P0J0 144 aa3.91□□□□□ -1.78
SMCHD1-205ENST00000581383 TRMT6Q9UJA5 497 aaKnown RBP3.91□□□□□ -1.78
SMCHD1-205ENST00000581383 UMODL1Q5DID0 1318 aa3.91□□□□□ -1.78
SMCHD1-205ENST00000581383 NDUFAF8A1L188 74 aa3.9□□□□□ -1.79
SMCHD1-205ENST00000581383 CCDC69A6NI79 296 aa3.9□□□□□ -1.79
SMCHD1-205ENST00000581383 HSF2BPO75031 334 aa3.9□□□□□ -1.79
SMCHD1-205ENST00000581383 CSO75390 466 aaKnown RBP3.9□□□□□ -1.79
SMCHD1-205ENST00000581383 CXCL14O95715 111 aa3.9□□□□□ -1.79
SMCHD1-205ENST00000581383 ABHD2P08910 425 aa3.9□□□□□ -1.79
SMCHD1-205ENST00000581383 TRIM49P0CI25 452 aa3.9□□□□□ -1.79
SMCHD1-205ENST00000581383 TRIM49CP0CI26 452 aa3.9□□□□□ -1.79
SMCHD1-205ENST00000581383 AREGP15514 252 aa3.9□□□□□ -1.79
SMCHD1-205ENST00000581383 DPEP1P16444 411 aa3.9□□□□□ -1.79
SMCHD1-205ENST00000581383 UGT1A4P22310 534 aa3.9□□□□□ -1.79
SMCHD1-205ENST00000581383 PKLRP30613 574 aa3.9□□□□□ -1.79
SMCHD1-205ENST00000581383 FHITP49789 147 aa3.9□□□□□ -1.79
SMCHD1-205ENST00000581383 LUMP51884 338 aaPredicted RBP3.9□□□□□ -1.79
SMCHD1-205ENST00000581383 CNN1P51911 297 aaKnown RBP3.9□□□□□ -1.79
SMCHD1-205ENST00000581383 HERV-K104P63124 156 aa3.9□□□□□ -1.79
SMCHD1-205ENST00000581383 RBBP4Q09028 425 aa3.9□□□□□ -1.79
SMCHD1-205ENST00000581383 NFATC2Q13469 925 aa3.9□□□□□ -1.79
SMCHD1-205ENST00000581383 MLF2Q15773 248 aaPredicted RBP3.9□□□□□ -1.79
SMCHD1-205ENST00000581383 KNOP1Q1ED39 458 aaKnown RBP3.9□□□□□ -1.79
SMCHD1-205ENST00000581383 WSCD2Q2TBF2 565 aa3.9□□□□□ -1.79
SMCHD1-205ENST00000581383 ZFAND4Q86XD8 727 aa3.9□□□□□ -1.79
SMCHD1-205ENST00000581383 Q8NBF4 154 aa3.9□□□□□ -1.79
SMCHD1-205ENST00000581383 TAF15Q92804 592 aaKnown RBP eCLIP3.9□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms