RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 AIF1LQ9BQI0 150 aa11.78□□□□□ -0.52
CLSTN3-208ENST00000538933 SLC26A1Q9H2B4 701 aa11.78□□□□□ -0.52
CLSTN3-208ENST00000538933 PELI2Q9HAT8 420 aa11.78□□□□□ -0.52
CLSTN3-208ENST00000538933 RAP2CQ9Y3L5 183 aa11.78□□□□□ -0.52
CLSTN3-208ENST00000538933 A0A1W2PPV9 198 aa11.77□□□□□ -0.53
CLSTN3-208ENST00000538933 OR7A17O14581 309 aa11.77□□□□□ -0.53
CLSTN3-208ENST00000538933 AZIN1O14977 448 aa11.77□□□□□ -0.53
CLSTN3-208ENST00000538933 UGDHO60701 494 aa11.77□□□□□ -0.53
CLSTN3-208ENST00000538933 CRYABP02511 175 aaKnown RBP11.77□□□□□ -0.53
CLSTN3-208ENST00000538933 ALBP02768 609 aa11.77□□□□□ -0.53
CLSTN3-208ENST00000538933 ENO1P06733 434 aaKnown RBP11.77□□□□□ -0.53
CLSTN3-208ENST00000538933 C1GALT1C1LP0DN25 315 aa11.77□□□□□ -0.53
CLSTN3-208ENST00000538933 KITP10721 976 aa11.77□□□□□ -0.53
CLSTN3-208ENST00000538933 PEBP1P30086 187 aaKnown RBP11.77□□□□□ -0.53
CLSTN3-208ENST00000538933 HNF4AP41235 474 aa11.77□□□□□ -0.53
CLSTN3-208ENST00000538933 RPL14P50914 215 aaKnown RBP11.77□□□□□ -0.53
CLSTN3-208ENST00000538933 ARG2P78540 354 aa11.77□□□□□ -0.53
CLSTN3-208ENST00000538933 PHEXP78562 749 aa11.77□□□□□ -0.53
CLSTN3-208ENST00000538933 GALNT1Q10472 559 aaPredicted RBP11.77□□□□□ -0.53
CLSTN3-208ENST00000538933 SLC5A12Q1EHB4 618 aa11.77□□□□□ -0.53
CLSTN3-208ENST00000538933 CATSPEREQ5SY80 951 aa11.77□□□□□ -0.53
CLSTN3-208ENST00000538933 LIPJQ5W064 366 aa11.77□□□□□ -0.53
CLSTN3-208ENST00000538933 ATG9BQ674R7 924 aa11.77□□□□□ -0.53
CLSTN3-208ENST00000538933 FAAH2Q6GMR7 532 aa11.77□□□□□ -0.53
CLSTN3-208ENST00000538933 TLDC1Q6P9B6 456 aa11.77□□□□□ -0.53
CLSTN3-208ENST00000538933 NXPE4Q6UWF7 544 aa11.77□□□□□ -0.53
CLSTN3-208ENST00000538933 RGS9BPQ6ZS82 235 aa11.77□□□□□ -0.53
CLSTN3-208ENST00000538933 NCCRP1Q6ZVX7 275 aaPredicted RBP11.77□□□□□ -0.53
CLSTN3-208ENST00000538933 TRIM73Q86UV7 250 aa11.77□□□□□ -0.53
CLSTN3-208ENST00000538933 WDR75Q8IWA0 830 aaKnown RBP11.77□□□□□ -0.53
CLSTN3-208ENST00000538933 DNAJC22Q8N4W6 341 aa11.77□□□□□ -0.53
CLSTN3-208ENST00000538933 CDYL2Q8N8U2 506 aa11.77□□□□□ -0.53
CLSTN3-208ENST00000538933 C19orf47Q8N9M1 422 aaKnown RBP11.77□□□□□ -0.53
CLSTN3-208ENST00000538933 OR52B6Q8NGF0 335 aa11.77□□□□□ -0.53
CLSTN3-208ENST00000538933 OR2A1Q8NGT9 310 aa11.77□□□□□ -0.53
CLSTN3-208ENST00000538933 FLVCR1-AS1Q8TAF5 88 aa11.77□□□□□ -0.53
CLSTN3-208ENST00000538933 METTL6Q8TCB7 284 aa11.77□□□□□ -0.53
CLSTN3-208ENST00000538933 AGAP11Q8TF27 550 aa11.77□□□□□ -0.53
CLSTN3-208ENST00000538933 NRGNQ92686 78 aa11.77□□□□□ -0.53
CLSTN3-208ENST00000538933 UBE2E3Q969T4 207 aa11.77□□□□□ -0.53
CLSTN3-208ENST00000538933 REPS1Q96D71 796 aa11.77□□□□□ -0.53
CLSTN3-208ENST00000538933 PTCD3Q96EY7 689 aaKnown RBP11.77□□□□□ -0.53
CLSTN3-208ENST00000538933 C7orf26Q96N11 449 aa11.77□□□□□ -0.53
CLSTN3-208ENST00000538933 OR2A14Q96R47 310 aa11.77□□□□□ -0.53
CLSTN3-208ENST00000538933 DPH7Q9BTV6 452 aa11.77□□□□□ -0.53
CLSTN3-208ENST00000538933 EFCAB11Q9BUY7 163 aa11.77□□□□□ -0.53
CLSTN3-208ENST00000538933 NTMT1Q9BV86 223 aa11.77□□□□□ -0.53
CLSTN3-208ENST00000538933 FAM107BQ9H098 131 aa11.77□□□□□ -0.53
CLSTN3-208ENST00000538933 CCDC134Q9H6E4 229 aa11.77□□□□□ -0.53
CLSTN3-208ENST00000538933 ZBTB26Q9HCK0 441 aa11.77□□□□□ -0.53
CLSTN3-208ENST00000538933 PFDN4Q9NQP4 134 aa11.77□□□□□ -0.53
CLSTN3-208ENST00000538933 TRPS1Q9UHF7 1281 aa11.77□□□□□ -0.53
CLSTN3-208ENST00000538933 ADAM21Q9UKJ8 722 aa11.77□□□□□ -0.53
CLSTN3-208ENST00000538933 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.77□□□□□ -0.53
CLSTN3-208ENST00000538933 MEMO1Q9Y316 297 aa11.77□□□□□ -0.53
CLSTN3-208ENST00000538933 H7BY64 318 aa11.76□□□□□ -0.53
CLSTN3-208ENST00000538933 FFAR3O14843 346 aa11.76□□□□□ -0.53
CLSTN3-208ENST00000538933 GPR42O15529 346 aa11.76□□□□□ -0.53
CLSTN3-208ENST00000538933 SNNO75324 88 aaPredicted RBP11.76□□□□□ -0.53
CLSTN3-208ENST00000538933 ESRRBO95718 433 aa11.76□□□□□ -0.53
CLSTN3-208ENST00000538933 KRT6AP02538 564 aa11.76□□□□□ -0.53
CLSTN3-208ENST00000538933 KRT6BP04259 564 aa11.76□□□□□ -0.53
CLSTN3-208ENST00000538933 TROVE2P10155 538 aaKnown RBP eCLIP11.76□□□□□ -0.53
CLSTN3-208ENST00000538933 ESRRAP11474 423 aaPredicted RBP11.76□□□□□ -0.53
CLSTN3-208ENST00000538933 PCNAP12004 261 aa11.76□□□□□ -0.53
CLSTN3-208ENST00000538933 LSP1P33241 339 aa11.76□□□□□ -0.53
CLSTN3-208ENST00000538933 KRT6CP48668 564 aa11.76□□□□□ -0.53
CLSTN3-208ENST00000538933 RBPJQ06330 500 aa11.76□□□□□ -0.53
CLSTN3-208ENST00000538933 IFT88Q13099 833 aa11.76□□□□□ -0.53
CLSTN3-208ENST00000538933 TRAF3Q13114 568 aa11.76□□□□□ -0.53
CLSTN3-208ENST00000538933 DOC2AQ14183 400 aa11.76□□□□□ -0.53
CLSTN3-208ENST00000538933 SLBPQ14493 270 aaKnown RBP eCLIP11.76□□□□□ -0.53
CLSTN3-208ENST00000538933 RBBP5Q15291 538 aaKnown RBP11.76□□□□□ -0.53
CLSTN3-208ENST00000538933 CPSF6Q16630 551 aaKnown RBP eCLIP11.76□□□□□ -0.53
CLSTN3-208ENST00000538933 GRHL2Q6ISB3 625 aa11.76□□□□□ -0.53
CLSTN3-208ENST00000538933 MED27Q6P2C8 311 aa11.76□□□□□ -0.53
CLSTN3-208ENST00000538933 CPLX4Q7Z7G2 160 aa11.76□□□□□ -0.53
CLSTN3-208ENST00000538933 CLYBLQ8N0X4 340 aa11.76□□□□□ -0.53
CLSTN3-208ENST00000538933 ZNF781Q8N8C0 355 aa11.76□□□□□ -0.53
CLSTN3-208ENST00000538933 OR6Y1Q8NGX8 325 aa11.76□□□□□ -0.53
CLSTN3-208ENST00000538933 N4BP2L2Q92802 583 aaPredicted RBP11.76□□□□□ -0.53
CLSTN3-208ENST00000538933 CHMP6Q96FZ7 201 aa11.76□□□□□ -0.53
CLSTN3-208ENST00000538933 PRAP1Q96NZ9 151 aa11.76□□□□□ -0.53
CLSTN3-208ENST00000538933 EHD1Q9H4M9 534 aa11.76□□□□□ -0.53
CLSTN3-208ENST00000538933 ELOVL6Q9H5J4 265 aa11.76□□□□□ -0.53
CLSTN3-208ENST00000538933 SLCO1B3Q9NPD5 702 aa11.76□□□□□ -0.53
CLSTN3-208ENST00000538933 TXLNGQ9NUQ3 528 aa11.76□□□□□ -0.53
CLSTN3-208ENST00000538933 TMEM184CQ9NVA4 438 aa11.76□□□□□ -0.53
CLSTN3-208ENST00000538933 FGFR1OP2Q9NVK5 253 aa11.76□□□□□ -0.53
CLSTN3-208ENST00000538933 MARCOQ9UEW3 520 aaPredicted RBP11.76□□□□□ -0.53
CLSTN3-208ENST00000538933 SNX6Q9UNH7 406 aa11.76□□□□□ -0.53
CLSTN3-208ENST00000538933 SH2B3Q9UQQ2 575 aa11.76□□□□□ -0.53
CLSTN3-208ENST00000538933 RNF11Q9Y3C5 154 aa11.76□□□□□ -0.53
CLSTN3-208ENST00000538933 DYTNA2CJ06 578 aa11.75□□□□□ -0.53
CLSTN3-208ENST00000538933 GMNCA6NCL1 334 aa11.75□□□□□ -0.53
CLSTN3-208ENST00000538933 VSTM2BA6NLU5 285 aa11.75□□□□□ -0.53
CLSTN3-208ENST00000538933 SLCO1B7G3V0H7 640 aa11.75□□□□□ -0.53
CLSTN3-208ENST00000538933 PPP6CO00743 305 aa11.75□□□□□ -0.53
CLSTN3-208ENST00000538933 EDF1O60869 148 aaKnown RBP11.75□□□□□ -0.53
CLSTN3-208ENST00000538933 SKAP2O75563 359 aaPredicted RBP11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms