RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 ATP9AO75110 1047 aa2.8□□□□□ -1.96
VPS50-219ENST00000495039 CLN5O75503 358 aa2.8□□□□□ -1.96
VPS50-219ENST00000495039 NXPH4O95158 308 aa2.8□□□□□ -1.96
VPS50-219ENST00000495039 LETM1O95202 739 aaPredicted RBP2.8□□□□□ -1.96
VPS50-219ENST00000495039 LY6G6DO95868 133 aa2.8□□□□□ -1.96
VPS50-219ENST00000495039 SLC16A8O95907 504 aa2.8□□□□□ -1.96
VPS50-219ENST00000495039 ATP6V1B1P15313 513 aa2.8□□□□□ -1.96
VPS50-219ENST00000495039 PKLRP30613 574 aa2.8□□□□□ -1.96
VPS50-219ENST00000495039 NDST2P52849 883 aa2.8□□□□□ -1.96
VPS50-219ENST00000495039 SLC34A1Q06495 639 aa2.8□□□□□ -1.96
VPS50-219ENST00000495039 ARHGAP1Q07960 439 aa2.8□□□□□ -1.96
VPS50-219ENST00000495039 CEACAM7Q14002 265 aa2.8□□□□□ -1.96
VPS50-219ENST00000495039 KIAA0141Q14154 515 aaPredicted RBP2.8□□□□□ -1.96
VPS50-219ENST00000495039 GCKRQ14397 625 aa2.8□□□□□ -1.96
VPS50-219ENST00000495039 TYSND1Q2T9J0 566 aa2.8□□□□□ -1.96
VPS50-219ENST00000495039 KBTBD12Q3ZCT8 623 aa2.8□□□□□ -1.96
VPS50-219ENST00000495039 AQP12AQ8IXF9 295 aa2.8□□□□□ -1.96
VPS50-219ENST00000495039 DND1Q8IYX4 353 aaKnown RBP2.8□□□□□ -1.96
VPS50-219ENST00000495039 SYCP3Q8IZU3 236 aa2.8□□□□□ -1.96
VPS50-219ENST00000495039 ZNF444Q8N0Y2 327 aaPredicted RBP2.8□□□□□ -1.96
VPS50-219ENST00000495039 ELMOD1Q8N336 334 aa2.8□□□□□ -1.96
VPS50-219ENST00000495039 RNF149Q8NC42 400 aa2.8□□□□□ -1.96
VPS50-219ENST00000495039 OR13C5Q8NGS8 318 aa2.8□□□□□ -1.96
VPS50-219ENST00000495039 CD99L2Q8TCZ2 262 aa2.8□□□□□ -1.96
VPS50-219ENST00000495039 SLC35C1Q96A29 364 aa2.8□□□□□ -1.96
VPS50-219ENST00000495039 SNRNP40Q96DI7 357 aaKnown RBP2.8□□□□□ -1.96
VPS50-219ENST00000495039 BPIFA2Q96DR5 249 aa2.8□□□□□ -1.96
VPS50-219ENST00000495039 RASL10BQ96S79 203 aa2.8□□□□□ -1.96
VPS50-219ENST00000495039 TRIM7Q9C029 511 aa2.8□□□□□ -1.96
VPS50-219ENST00000495039 SLC39A8Q9C0K1 460 aa2.8□□□□□ -1.96
VPS50-219ENST00000495039 ZNF350Q9GZX5 532 aa2.8□□□□□ -1.96
VPS50-219ENST00000495039 ADNPQ9H2P0 1102 aa2.8□□□□□ -1.96
VPS50-219ENST00000495039 MRPL17Q9NRX2 175 aaKnown RBP2.8□□□□□ -1.96
VPS50-219ENST00000495039 ABCB8Q9NUT2 735 aa2.8□□□□□ -1.96
VPS50-219ENST00000495039 DNAJC17Q9NVM6 304 aaKnown RBP2.8□□□□□ -1.96
VPS50-219ENST00000495039 ARGLU1Q9NWB6 273 aaPredicted RBP2.8□□□□□ -1.96
VPS50-219ENST00000495039 LIPT1Q9Y234 373 aa2.8□□□□□ -1.96
VPS50-219ENST00000495039 TMED7Q9Y3B3 224 aa2.8□□□□□ -1.96
VPS50-219ENST00000495039 MRPS18CQ9Y3D5 142 aaKnown RBP2.8□□□□□ -1.96
VPS50-219ENST00000495039 ZFP37Q9Y6Q3 630 aaPredicted RBP2.8□□□□□ -1.96
VPS50-219ENST00000495039 IGLV4-3A0A075B6K6 122 aa2.79□□□□□ -1.96
VPS50-219ENST00000495039 IGHV3-20A0A0C4DH32 117 aa2.79□□□□□ -1.96
VPS50-219ENST00000495039 IGHV3-38A0A0C4DH36 116 aa2.79□□□□□ -1.96
VPS50-219ENST00000495039 C13orf42A0A1B0GVH6 325 aa2.79□□□□□ -1.96
VPS50-219ENST00000495039 LMO7DNF2Z398 122 aa2.79□□□□□ -1.96
VPS50-219ENST00000495039 TNFSF12O43508 249 aa2.79□□□□□ -1.96
VPS50-219ENST00000495039 GLCEO94923 617 aa2.79□□□□□ -1.96
VPS50-219ENST00000495039 MUTP22033 750 aa2.79□□□□□ -1.96
VPS50-219ENST00000495039 ATP5DP30049 168 aa2.79□□□□□ -1.96
VPS50-219ENST00000495039 CTNNA1P35221 906 aaKnown RBP2.79□□□□□ -1.96
VPS50-219ENST00000495039 SNU13P55769 128 aaKnown RBP2.79□□□□□ -1.96
VPS50-219ENST00000495039 ASIC1P78348 528 aa2.79□□□□□ -1.96
VPS50-219ENST00000495039 SLC3A1Q07837 685 aa2.79□□□□□ -1.96
VPS50-219ENST00000495039 ZNF146Q15072 292 aa2.79□□□□□ -1.96
VPS50-219ENST00000495039 ACKR1Q16570 336 aa2.79□□□□□ -1.96
VPS50-219ENST00000495039 ZNF789Q5FWF6 425 aa2.79□□□□□ -1.96
VPS50-219ENST00000495039 AGAP6Q5VW22 663 aa2.79□□□□□ -1.96
VPS50-219ENST00000495039 NHLRC1Q6VVB1 395 aa2.79□□□□□ -1.96
VPS50-219ENST00000495039 SIGLEC15Q6ZMC9 328 aa2.79□□□□□ -1.96
VPS50-219ENST00000495039 PIWIL3Q7Z3Z3 882 aaKnown RBP2.79□□□□□ -1.96
VPS50-219ENST00000495039 SIAH3Q8IW03 269 aa2.79□□□□□ -1.96
VPS50-219ENST00000495039 CCDC83Q8IWF9 413 aa2.79□□□□□ -1.96
VPS50-219ENST00000495039 KLHDC8AQ8IYD2 350 aa2.79□□□□□ -1.96
VPS50-219ENST00000495039 SLC43A2Q8N370 569 aa2.79□□□□□ -1.96
VPS50-219ENST00000495039 FIBINQ8TAL6 211 aa2.79□□□□□ -1.96
VPS50-219ENST00000495039 ZDHHC19Q8WVZ1 309 aaPredicted RBP2.79□□□□□ -1.96
VPS50-219ENST00000495039 SMPDL3AQ92484 453 aa2.79□□□□□ -1.96
VPS50-219ENST00000495039 ZNF274Q96GC6 653 aaPredicted RBP2.79□□□□□ -1.96
VPS50-219ENST00000495039 VMP1Q96GC9 406 aa2.79□□□□□ -1.96
VPS50-219ENST00000495039 ZNF559Q9BR84 538 aa2.79□□□□□ -1.96
VPS50-219ENST00000495039 UBAC1Q9BSL1 405 aa2.79□□□□□ -1.96
VPS50-219ENST00000495039 CCM2Q9BSQ5 444 aa2.79□□□□□ -1.96
VPS50-219ENST00000495039 DESI2Q9BSY9 194 aa2.79□□□□□ -1.96
VPS50-219ENST00000495039 YTHDF1Q9BYJ9 559 aaKnown RBP2.79□□□□□ -1.96
VPS50-219ENST00000495039 FNDC4Q9H6D8 234 aaPredicted RBP2.79□□□□□ -1.96
VPS50-219ENST00000495039 VIPAS39Q9H9C1 493 aa2.79□□□□□ -1.96
VPS50-219ENST00000495039 KCNK13Q9HB14 408 aa2.79□□□□□ -1.96
VPS50-219ENST00000495039 FAM149AA5PLN7 773 aa2.78□□□□□ -1.96
VPS50-219ENST00000495039 ZNF263O14978 683 aa2.78□□□□□ -1.96
VPS50-219ENST00000495039 TTI1O43156 1089 aa2.78□□□□□ -1.96
VPS50-219ENST00000495039 NME6O75414 186 aaPredicted RBP2.78□□□□□ -1.96
VPS50-219ENST00000495039 ADORA3P0DMS8 318 aa2.78□□□□□ -1.96
VPS50-219ENST00000495039 SKILP12757 684 aa2.78□□□□□ -1.96
VPS50-219ENST00000495039 ZNF19P17023 458 aa2.78□□□□□ -1.96
VPS50-219ENST00000495039 RPL9P32969 192 aaKnown RBP2.78□□□□□ -1.96
VPS50-219ENST00000495039 MAGEB1P43366 347 aa2.78□□□□□ -1.96
VPS50-219ENST00000495039 EVCP57679 992 aa2.78□□□□□ -1.96
VPS50-219ENST00000495039 STX1BP61266 288 aa2.78□□□□□ -1.96
VPS50-219ENST00000495039 FKBP3Q00688 224 aaKnown RBP2.78□□□□□ -1.96
VPS50-219ENST00000495039 SLMAPQ14BN4 828 aa2.78□□□□□ -1.96
VPS50-219ENST00000495039 MLF2Q15773 248 aaPredicted RBP2.78□□□□□ -1.96
VPS50-219ENST00000495039 UPP1Q16831 310 aa2.78□□□□□ -1.96
VPS50-219ENST00000495039 PLPP4Q5VZY2 271 aa2.78□□□□□ -1.96
VPS50-219ENST00000495039 ZNF776Q68DI1 518 aaPredicted RBP2.78□□□□□ -1.96
VPS50-219ENST00000495039 ALKBH5Q6P6C2 394 aaKnown RBP2.78□□□□□ -1.96
VPS50-219ENST00000495039 OR4N5Q8IXE1 308 aa2.78□□□□□ -1.96
VPS50-219ENST00000495039 SPPL2AQ8TCT8 520 aa2.78□□□□□ -1.96
VPS50-219ENST00000495039 SAP25Q8TEE9 199 aa2.78□□□□□ -1.96
VPS50-219ENST00000495039 AP2M1Q96CW1 435 aa2.78□□□□□ -1.96
VPS50-219ENST00000495039 MMADHCQ9H3L0 296 aaPredicted RBP2.78□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms