RNA–Protein interactions for RNA: ENST00000450066.6

USP39-207, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-207ENST00000450066 VMACQ2NL98 169 aa13.51□□□□□ -0.25
USP39-207ENST00000450066 ZC3H12BQ5HYM0 836 aaKnown RBP13.51□□□□□ -0.25
USP39-207ENST00000450066 OGFRL1Q5TC84 451 aaPredicted RBP13.51□□□□□ -0.25
USP39-207ENST00000450066 LPCAT4Q643R3 524 aa13.51□□□□□ -0.25
USP39-207ENST00000450066 TMEM214Q6NUQ4 689 aaKnown RBP13.51□□□□□ -0.25
USP39-207ENST00000450066 FAM180BQ6P0A1 224 aa13.51□□□□□ -0.25
USP39-207ENST00000450066 ZZZ3Q8IYH5 903 aa13.51□□□□□ -0.25
USP39-207ENST00000450066 CSNK1A1LQ8N752 337 aa13.51□□□□□ -0.25
USP39-207ENST00000450066 TMEM105Q8N8V8 129 aa13.51□□□□□ -0.25
USP39-207ENST00000450066 UCN3Q969E3 161 aa13.51□□□□□ -0.25
USP39-207ENST00000450066 TCTN2Q96GX1 697 aa13.51□□□□□ -0.25
USP39-207ENST00000450066 CCDC3Q9BQI4 270 aa13.51□□□□□ -0.25
USP39-207ENST00000450066 NLNQ9BYT8 704 aa13.51□□□□□ -0.25
USP39-207ENST00000450066 KLHL4Q9C0H6 718 aa13.51□□□□□ -0.25
USP39-207ENST00000450066 FAM60AQ9NP50 221 aa13.51□□□□□ -0.25
USP39-207ENST00000450066 SLC35C2Q9NQQ7 365 aa13.51□□□□□ -0.25
USP39-207ENST00000450066 EPHA6Q9UF33 1036 aa13.51□□□□□ -0.25
USP39-207ENST00000450066 FBXO4Q9UKT5 387 aa13.51□□□□□ -0.25
USP39-207ENST00000450066 TNRC6BQ9UPQ9 1833 aaKnown RBP13.5□□□□□ -0.25
USP39-207ENST00000450066 CREG1O75629 220 aa13.5□□□□□ -0.25
USP39-207ENST00000450066 CAPNS1P04632 268 aa13.5□□□□□ -0.25
USP39-207ENST00000450066 ALOX12P18054 663 aa13.5□□□□□ -0.25
USP39-207ENST00000450066 MVDP53602 400 aa13.5□□□□□ -0.25
USP39-207ENST00000450066 SNRPNP63162 240 aaKnown RBP13.5□□□□□ -0.25
USP39-207ENST00000450066 VAC14Q08AM6 782 aa13.5□□□□□ -0.25
USP39-207ENST00000450066 DEFB134Q4QY38 66 aa13.5□□□□□ -0.25
USP39-207ENST00000450066 SLC48A1Q6P1K1 146 aa13.5□□□□□ -0.25
USP39-207ENST00000450066 PTOV1Q86YD1 416 aa13.5□□□□□ -0.25
USP39-207ENST00000450066 OR52N2Q8NGI0 321 aa13.5□□□□□ -0.25
USP39-207ENST00000450066 PSMA8Q8TAA3 256 aa13.5□□□□□ -0.25
USP39-207ENST00000450066 ZCCHC10Q8TBK6 192 aa13.5□□□□□ -0.25
USP39-207ENST00000450066 DNAJC9Q8WXX5 260 aa13.5□□□□□ -0.25
USP39-207ENST00000450066 LRTOMTQ8WZ04 291 aa13.5□□□□□ -0.25
USP39-207ENST00000450066 FAM162AQ96A26 154 aa13.5□□□□□ -0.25
USP39-207ENST00000450066 ZC3H10Q96K80 434 aaKnown RBP13.5□□□□□ -0.25
USP39-207ENST00000450066 MAP3K3Q99759 626 aa13.5□□□□□ -0.25
USP39-207ENST00000450066 MAPKAP1Q9BPZ7 522 aa13.5□□□□□ -0.25
USP39-207ENST00000450066 CXorf36Q9H7Y0 433 aa13.5□□□□□ -0.25
USP39-207ENST00000450066 GPATCH2Q9NW75 528 aa13.5□□□□□ -0.25
USP39-207ENST00000450066 CES1P1Q9UKY3 287 aa13.5□□□□□ -0.25
USP39-207ENST00000450066 PGRMC2O15173 223 aa13.49□□□□□ -0.25
USP39-207ENST00000450066 B3GALT2O43825 422 aa13.49□□□□□ -0.25
USP39-207ENST00000450066 KRT75O95678 551 aa13.49□□□□□ -0.25
USP39-207ENST00000450066 GLB1P16278 677 aa13.49□□□□□ -0.25
USP39-207ENST00000450066 CHI3L1P36222 383 aaPredicted RBP13.49□□□□□ -0.25
USP39-207ENST00000450066 VSX2P58304 361 aaPredicted RBP13.49□□□□□ -0.25
USP39-207ENST00000450066 FADDQ13158 208 aa13.49□□□□□ -0.25
USP39-207ENST00000450066 VEZF1Q14119 521 aa13.49□□□□□ -0.25
USP39-207ENST00000450066 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.49□□□□□ -0.25
USP39-207ENST00000450066 PEAR1Q5VY43 1037 aaPredicted RBP13.49□□□□□ -0.25
USP39-207ENST00000450066 C18orf63Q68DL7 685 aa13.49□□□□□ -0.25
USP39-207ENST00000450066 FAM92BQ6ZTR7 304 aa13.49□□□□□ -0.25
USP39-207ENST00000450066 ERMP1Q7Z2K6 904 aa13.49□□□□□ -0.25
USP39-207ENST00000450066 SLC35F3Q8IY50 421 aa13.49□□□□□ -0.25
USP39-207ENST00000450066 DNAJC22Q8N4W6 341 aa13.49□□□□□ -0.25
USP39-207ENST00000450066 DTWD2Q8NBA8 298 aa13.49□□□□□ -0.25
USP39-207ENST00000450066 NETO1Q8TDF5 533 aa13.49□□□□□ -0.25
USP39-207ENST00000450066 PIGKQ92643 395 aa13.49□□□□□ -0.25
USP39-207ENST00000450066 NCLNQ969V3 563 aa13.49□□□□□ -0.25
USP39-207ENST00000450066 PPWD1Q96BP3 646 aaKnown RBP13.49□□□□□ -0.25
USP39-207ENST00000450066 ZDHHC12Q96GR4 267 aa13.49□□□□□ -0.25
USP39-207ENST00000450066 ZNF184Q99676 751 aaPredicted RBP13.49□□□□□ -0.25
USP39-207ENST00000450066 EPB41L1Q9H4G0 881 aa13.49□□□□□ -0.25
USP39-207ENST00000450066 RAD21L1Q9H4I0 556 aa13.49□□□□□ -0.25
USP39-207ENST00000450066 DCAF13Q9NV06 445 aaKnown RBP13.49□□□□□ -0.25
USP39-207ENST00000450066 KCMF1Q9P0J7 381 aa13.49□□□□□ -0.25
USP39-207ENST00000450066 PHF11Q9UIL8 331 aa13.49□□□□□ -0.25
USP39-207ENST00000450066 SLC22A7Q9Y694 548 aa13.49□□□□□ -0.25
USP39-207ENST00000450066 VPS13AQ96RL7 3174 aa13.49□□□□□ -0.25
USP39-207ENST00000450066 MYO15AQ9UKN7 3530 aa13.49□□□□□ -0.25
USP39-207ENST00000450066 TLCD2A6NGC4 264 aa13.49□□□□□ -0.25
USP39-207ENST00000450066 GLOD5A6NK44 160 aa13.49□□□□□ -0.25
USP39-207ENST00000450066 TXNDC9O14530 226 aa13.49□□□□□ -0.25
USP39-207ENST00000450066 HCRTR1O43613 425 aa13.49□□□□□ -0.25
USP39-207ENST00000450066 SRPX2O60687 465 aaPredicted RBP13.49□□□□□ -0.25
USP39-207ENST00000450066 PRKRAO75569 313 aaKnown RBP13.49□□□□□ -0.25
USP39-207ENST00000450066 TIPRLO75663 272 aa13.49□□□□□ -0.25
USP39-207ENST00000450066 FCGR1AP12314 374 aa13.49□□□□□ -0.25
USP39-207ENST00000450066 ALDH4A1P30038 563 aa13.49□□□□□ -0.25
USP39-207ENST00000450066 SOAT1P35610 550 aa13.49□□□□□ -0.25
USP39-207ENST00000450066 GPR3P46089 330 aa13.49□□□□□ -0.25
USP39-207ENST00000450066 LRRC36Q1X8D7 754 aa13.49□□□□□ -0.25
USP39-207ENST00000450066 ANGPTL8Q6UXH0 198 aa13.49□□□□□ -0.25
USP39-207ENST00000450066 MCATQ8IVS2 390 aaKnown RBP13.49□□□□□ -0.25
USP39-207ENST00000450066 KBTBD2Q8IY47 623 aa13.49□□□□□ -0.25
USP39-207ENST00000450066 ADCY4Q8NFM4 1077 aa13.49□□□□□ -0.25
USP39-207ENST00000450066 FAM110BQ8TC76 370 aa13.49□□□□□ -0.25
USP39-207ENST00000450066 AMDHD1Q96NU7 426 aa13.49□□□□□ -0.25
USP39-207ENST00000450066 CD180Q99467 661 aa13.49□□□□□ -0.25
USP39-207ENST00000450066 DPH2Q9BQC3 489 aaPredicted RBP13.49□□□□□ -0.25
USP39-207ENST00000450066 UGT2B28Q9BY64 529 aa13.49□□□□□ -0.25
USP39-207ENST00000450066 CHRNA10Q9GZZ6 450 aa13.49□□□□□ -0.25
USP39-207ENST00000450066 EPS8L2Q9H6S3 715 aa13.49□□□□□ -0.25
USP39-207ENST00000450066 PRDM9Q9NQV7 894 aa13.49□□□□□ -0.25
USP39-207ENST00000450066 AGPAT4Q9NRZ5 378 aa13.49□□□□□ -0.25
USP39-207ENST00000450066 OLAHQ9NV23 265 aa13.49□□□□□ -0.25
USP39-207ENST00000450066 MS4A12Q9NXJ0 267 aa13.49□□□□□ -0.25
USP39-207ENST00000450066 SNX8Q9Y5X2 465 aa13.49□□□□□ -0.25
USP39-207ENST00000450066 TMEM131Q92545 1883 aa13.48□□□□□ -0.25
USP39-207ENST00000450066 A0A1B0GTQ1 180 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms