RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 E2F1Q01094 437 aa16.21■□□□□ 0.19
CCDC28B-202ENST00000421922 PDE7AQ13946 482 aa16.21■□□□□ 0.19
CCDC28B-202ENST00000421922 FAM53BQ14153 422 aa16.21■□□□□ 0.19
CCDC28B-202ENST00000421922 PAGE3Q5JUK9 113 aa16.21■□□□□ 0.19
CCDC28B-202ENST00000421922 YOD1Q5VVQ6 348 aaPredicted RBP16.21■□□□□ 0.19
CCDC28B-202ENST00000421922 DNAJC14Q6Y2X3 702 aaPredicted RBP16.21■□□□□ 0.19
CCDC28B-202ENST00000421922 RBM44Q6ZP01 1051 aaKnown RBP16.21■□□□□ 0.19
CCDC28B-202ENST00000421922 ANKRD46Q86W74 232 aa16.21■□□□□ 0.19
CCDC28B-202ENST00000421922 OR9A4Q8NGU2 314 aa16.21■□□□□ 0.19
CCDC28B-202ENST00000421922 OR1L3Q8NH93 324 aa16.21■□□□□ 0.19
CCDC28B-202ENST00000421922 EXOSC8Q96B26 276 aaKnown RBP16.21■□□□□ 0.19
CCDC28B-202ENST00000421922 LRRC58Q96CX6 371 aa16.21■□□□□ 0.19
CCDC28B-202ENST00000421922 COQ8BQ96D53 544 aa16.21■□□□□ 0.19
CCDC28B-202ENST00000421922 C10orf90Q96M02 699 aa16.21■□□□□ 0.19
CCDC28B-202ENST00000421922 PANX1Q96RD7 426 aa16.21■□□□□ 0.19
CCDC28B-202ENST00000421922 MAPKAP1Q9BPZ7 522 aa16.21■□□□□ 0.19
CCDC28B-202ENST00000421922 CADM1Q9BY67 442 aaKnown RBP16.21■□□□□ 0.19
CCDC28B-202ENST00000421922 SPAG4Q9NPE6 437 aa16.21■□□□□ 0.19
CCDC28B-202ENST00000421922 CUTCQ9NTM9 273 aa16.21■□□□□ 0.19
CCDC28B-202ENST00000421922 RARRES3Q9UL19 164 aa16.21■□□□□ 0.19
CCDC28B-202ENST00000421922 DAPP1Q9UN19 280 aa16.21■□□□□ 0.19
CCDC28B-202ENST00000421922 RRP15Q9Y3B9 282 aaKnown RBP16.21■□□□□ 0.19
CCDC28B-202ENST00000421922 L3MBTL1Q9Y468 752 aa16.21■□□□□ 0.19
CCDC28B-202ENST00000421922 PCDHA9Q9Y5H5 950 aa16.21■□□□□ 0.19
CCDC28B-202ENST00000421922 DNAH14Q0VDD8 3507 aa16.21■□□□□ 0.19
CCDC28B-202ENST00000421922 EP300Q09472 2414 aaPredicted RBP16.21■□□□□ 0.18
CCDC28B-202ENST00000421922 A0A0A6YYC8 382 aaPredicted RBP16.2■□□□□ 0.18
CCDC28B-202ENST00000421922 PRSS51A0A1B0GVH4 220 aa16.2■□□□□ 0.18
CCDC28B-202ENST00000421922 FITM1A5D6W6 292 aa16.2■□□□□ 0.18
CCDC28B-202ENST00000421922 I3L1I5 382 aaPredicted RBP16.2■□□□□ 0.18
CCDC28B-202ENST00000421922 AGRPO00253 132 aa16.2■□□□□ 0.18
CCDC28B-202ENST00000421922 TBX19O60806 448 aa16.2■□□□□ 0.18
CCDC28B-202ENST00000421922 RDH16O75452 317 aa16.2■□□□□ 0.18
CCDC28B-202ENST00000421922 ERN1O75460 977 aaKnown RBP16.2■□□□□ 0.18
CCDC28B-202ENST00000421922 NSA2O95478 260 aaKnown RBP16.2■□□□□ 0.18
CCDC28B-202ENST00000421922 CTSBP07858 339 aa16.2■□□□□ 0.18
CCDC28B-202ENST00000421922 LIM2P55344 173 aa16.2■□□□□ 0.18
CCDC28B-202ENST00000421922 KCNJ2P63252 427 aa16.2■□□□□ 0.18
CCDC28B-202ENST00000421922 OLR1P78380 273 aa16.2■□□□□ 0.18
CCDC28B-202ENST00000421922 CAPRIN1Q14444 709 aaKnown RBP16.2■□□□□ 0.18
CCDC28B-202ENST00000421922 PRSS41Q7RTY9 318 aa16.2■□□□□ 0.18
CCDC28B-202ENST00000421922 SLITRK4Q8IW52 837 aa16.2■□□□□ 0.18
CCDC28B-202ENST00000421922 MMP21Q8N119 569 aa16.2■□□□□ 0.18
CCDC28B-202ENST00000421922 FAM47BQ8NA70 645 aa16.2■□□□□ 0.18
CCDC28B-202ENST00000421922 AGBL5Q8NDL9 886 aa16.2■□□□□ 0.18
CCDC28B-202ENST00000421922 OR4A15Q8NGL6 344 aa16.2■□□□□ 0.18
CCDC28B-202ENST00000421922 ZFP28Q8NHY6 868 aa16.2■□□□□ 0.18
CCDC28B-202ENST00000421922 ADAMTS18Q8TE60 1221 aa16.2■□□□□ 0.18
CCDC28B-202ENST00000421922 GTF2H4Q92759 462 aa16.2■□□□□ 0.18
CCDC28B-202ENST00000421922 MMABQ96EY8 250 aaPredicted RBP16.2■□□□□ 0.18
CCDC28B-202ENST00000421922 ZNF764Q96H86 408 aaPredicted RBP16.2■□□□□ 0.18
CCDC28B-202ENST00000421922 GBP5Q96PP8 586 aa16.2■□□□□ 0.18
CCDC28B-202ENST00000421922 BBS4Q96RK4 519 aa16.2■□□□□ 0.18
CCDC28B-202ENST00000421922 MAP10Q9P2G4 905 aa16.2■□□□□ 0.18
CCDC28B-202ENST00000421922 BTNL2Q9UIR0 455 aa16.2■□□□□ 0.18
CCDC28B-202ENST00000421922 UTS2RQ9UKP6 389 aa16.2■□□□□ 0.18
CCDC28B-202ENST00000421922 CDC14AQ9UNH5 594 aa16.2■□□□□ 0.18
CCDC28B-202ENST00000421922 SRPK3Q9UPE1 567 aa16.2■□□□□ 0.18
CCDC28B-202ENST00000421922 MRPS33Q9Y291 106 aaKnown RBP16.2■□□□□ 0.18
CCDC28B-202ENST00000421922 ATG4BQ9Y4P1 393 aa16.2■□□□□ 0.18
CCDC28B-202ENST00000421922 ZNF292O60281 2723 aa16.2■□□□□ 0.18
CCDC28B-202ENST00000421922 A0A096LPI6 279 aa16.19■□□□□ 0.18
CCDC28B-202ENST00000421922 A0A1W2PR48 441 aa16.19■□□□□ 0.18
CCDC28B-202ENST00000421922 RNASET2O00584 256 aaKnown RBP16.19■□□□□ 0.18
CCDC28B-202ENST00000421922 PROM1O43490 865 aa16.19■□□□□ 0.18
CCDC28B-202ENST00000421922 ERAL1O75616 437 aaKnown RBP16.19■□□□□ 0.18
CCDC28B-202ENST00000421922 ALAS2P22557 587 aa16.19■□□□□ 0.18
CCDC28B-202ENST00000421922 TRPC1P48995 793 aa16.19■□□□□ 0.18
CCDC28B-202ENST00000421922 RAB38P57729 211 aa16.19■□□□□ 0.18
CCDC28B-202ENST00000421922 ZNF385BQ569K4 471 aa16.19■□□□□ 0.18
CCDC28B-202ENST00000421922 C6orf163Q5TEZ5 329 aa16.19■□□□□ 0.18
CCDC28B-202ENST00000421922 STPG1Q5TH74 334 aa16.19■□□□□ 0.18
CCDC28B-202ENST00000421922 C18orf63Q68DL7 685 aa16.19■□□□□ 0.18
CCDC28B-202ENST00000421922 OR52E8Q6IFG1 317 aa16.19■□□□□ 0.18
CCDC28B-202ENST00000421922 TTLL10Q6ZVT0 673 aa16.19■□□□□ 0.18
CCDC28B-202ENST00000421922 SCUBE1Q8IWY4 988 aa16.19■□□□□ 0.18
CCDC28B-202ENST00000421922 TRIML2Q8N7C3 387 aa16.19■□□□□ 0.18
CCDC28B-202ENST00000421922 ZNF501Q96CX3 271 aaPredicted RBP16.19■□□□□ 0.18
CCDC28B-202ENST00000421922 ZBED6CLQ96FA7 236 aaPredicted RBP16.19■□□□□ 0.18
CCDC28B-202ENST00000421922 OR6C1Q96RD1 312 aa16.19■□□□□ 0.18
CCDC28B-202ENST00000421922 STRADBQ9C0K7 418 aa16.19■□□□□ 0.18
CCDC28B-202ENST00000421922 CLK4Q9HAZ1 481 aaKnown RBP16.19■□□□□ 0.18
CCDC28B-202ENST00000421922 VPS4AQ9UN37 437 aa16.19■□□□□ 0.18
CCDC28B-202ENST00000421922 EXO1Q9UQ84 846 aaKnown RBP16.19■□□□□ 0.18
CCDC28B-202ENST00000421922 MAN2B2Q9Y2E5 1009 aa16.19■□□□□ 0.18
CCDC28B-202ENST00000421922 ZNF780BQ9Y6R6 833 aa16.19■□□□□ 0.18
CCDC28B-202ENST00000421922 WDR87Q6ZQQ6 2873 aa16.19■□□□□ 0.18
CCDC28B-202ENST00000421922 A0A1W2PRB8 838 aa16.19■□□□□ 0.18
CCDC28B-202ENST00000421922 GLOD5A6NK44 160 aa16.19■□□□□ 0.18
CCDC28B-202ENST00000421922 TMX2-CTNND1H3BSU7 103 aa16.19■□□□□ 0.18
CCDC28B-202ENST00000421922 CBFA2T3O75081 653 aa16.19■□□□□ 0.18
CCDC28B-202ENST00000421922 ABCB1P08183 1280 aaPredicted RBP16.19■□□□□ 0.18
CCDC28B-202ENST00000421922 SPTBP11277 2137 aa16.19■□□□□ 0.18
CCDC28B-202ENST00000421922 RNH1P13489 461 aaKnown RBP16.19■□□□□ 0.18
CCDC28B-202ENST00000421922 MANFP55145 182 aaKnown RBP16.19■□□□□ 0.18
CCDC28B-202ENST00000421922 SHC2P98077 582 aa16.19■□□□□ 0.18
CCDC28B-202ENST00000421922 RUNX2Q13950 521 aa16.19■□□□□ 0.18
CCDC28B-202ENST00000421922 PDSS2Q86YH6 399 aa16.19■□□□□ 0.18
CCDC28B-202ENST00000421922 TMEM126BQ8IUX1 230 aa16.19■□□□□ 0.18
CCDC28B-202ENST00000421922 KIAA2013Q8IYS2 634 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms